CuGenDBv2

Gene ID	CmUC10G191570
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Tubulin alpha chain
Genome location	CmU531Chr10:21304748..21309846
RNA-Seq Expression	CmUC10G191570
Synteny	CmUC10G191570
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576903.1 hypothetical protein SDJN03_24477, partial [Cucurbita argyrosperma subsp. sororia]

4.1e-105

91.03

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Query:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN
        MA LQILKSTVSPPSISQP FG+QSSRFFS+LDSTRRF LLHGRRR+LRYG V RR SFRCAAQD+DKESNGEEPPESLFMKELKKRGITPTSLLEDT+N
Subjt:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN

Query:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP
         DF LGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFFLGPSFVHD +KTPISPP
Subjt:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISSQIAPRVN
        PYVDPYALLEDERI SQ+APRVN
Subjt:  PYVDPYALLEDERISSQIAPRVN

XP_022922737.1 uncharacterized protein LOC111430640 [Cucurbita moschata]

9.2e-105

90.58

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Query:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN
        MA LQILKSTVSPPSISQP FG+QSSRFFS+LDSTRRF LLHGRRR+LRYG V RR SFRCAAQD+DKESNGEEPPESLFMKELKKRGITPTSLLEDT+N
Subjt:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN

Query:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP
         DF LGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFFLGPSFVHD +KTPISPP
Subjt:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISSQIAPRVN
        PYVDPYALLEDER+ SQ+APRVN
Subjt:  PYVDPYALLEDERISSQIAPRVN

XP_022984914.1 uncharacterized protein LOC111483048 [Cucurbita maxima]

1.4e-105

91.48

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Query:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN
        MA LQILKSTVSPPSISQP FG+QSSRFFS+LDSTRRFVLLHGRRR+LRYG V RR SFRCAAQD+DKESNGEEPPESLFMKELKKRGITPTSLLEDT+N
Subjt:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN

Query:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP
         DF LGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFFLGPSFVHD +KTPISPP
Subjt:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISSQIAPRVN
        PYVDPYALLEDERI SQ+APRVN
Subjt:  PYVDPYALLEDERISSQIAPRVN

XP_023552655.1 uncharacterized protein LOC111810239 [Cucurbita pepo subsp. pepo]

7.1e-105

91.03

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Query:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN
        MA LQILKSTVSPPSISQP FG+QSSRFF +LDSTRRFVLLHGRRR+LRYG V RR SFRCAAQD+DKESNGEEPPESLFMKELKKRGITPTSLLEDT+N
Subjt:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN

Query:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP
         DF LGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFFLGPSFVHD +KTPISPP
Subjt:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISSQIAPRVN
        PYVDPYALLEDERI SQ+APRVN
Subjt:  PYVDPYALLEDERISSQIAPRVN

XP_038905067.1 uncharacterized protein LOC120091218 isoform X1 [Benincasa hispida]

4.1e-105

91.48

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Query:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN
        MA LQILKSTVSPPSISQPNFG QSSRFFSDLDSTRRFVLLHGRRR+LRYG VCRR SFRCAAQDADK+SNGEEPPESLFMKELKKRGITPTSLLEDTNN
Subjt:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN

Query:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP
         DF LGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI+ITVSFFFALYFF G SFVHD S+T ISPP
Subjt:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISSQIAPRVN
         YVDPYALLE+ERI SQ AP VN
Subjt:  PYVDPYALLEDERISSQIAPRVN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KY14 Uncharacterized protein

3.5e-94

84.3

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Query:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN
        MA LQILKS++S PSIS  NFG+QS+RF SD DS    +LLHGRRR+LRY  V RRF+FRCAA+D DKE+NGEEPPESLFMKELKKRGITPTSLLEDTN+
Subjt:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN

Query:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP
         DF LGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI+ITVSFFF LYFFLG SF+HD  +TPISPP
Subjt:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISSQIAPRVN
        PYVDPYALLEDERI SQIAP VN
Subjt:  PYVDPYALLEDERISSQIAPRVN

A0A1S3BY38 uncharacterized protein LOC103494832

2.4e-98

87.44

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Query:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN
        MA+LQILKST+S PSIS PNFG+QS+RFFSD DS    +LLHGRRR+LR   VCRRFSFRCAA+DADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN
Subjt:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN

Query:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP
         DF LGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI+ITVSFFF LYFF G SF+HD  KTPISPP
Subjt:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISSQIAPRVN
        PYVDPYALLEDERI SQIAP VN
Subjt:  PYVDPYALLEDERISSQIAPRVN

A0A6J1D5D9 uncharacterized protein LOC111017763

2.1e-99

87.44

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Query:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN
        MA LQ+LKS VSP SISQPNFG +SSRF S  DSTRRFV  HGRRR+LRYG VCRR SFRCAAQDADKESNGEEPPESLFMKELKKRG+TPTSLLED+N+
Subjt:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN

Query:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP
         DF LGGEMTGE RDFS RSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFF GPSFVH+  +TPISPP
Subjt:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISSQIAPRVN
        PYVDPYALLEDERI SQ APRVN
Subjt:  PYVDPYALLEDERISSQIAPRVN

A0A6J1E457 uncharacterized protein LOC111430640

4.5e-105

90.58

Show/hide

Query:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN
        MA LQILKSTVSPPSISQP FG+QSSRFFS+LDSTRRF LLHGRRR+LRYG V RR SFRCAAQD+DKESNGEEPPESLFMKELKKRGITPTSLLEDT+N
Subjt:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN

Query:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP
         DF LGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFFLGPSFVHD +KTPISPP
Subjt:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISSQIAPRVN
        PYVDPYALLEDER+ SQ+APRVN
Subjt:  PYVDPYALLEDERISSQIAPRVN

A0A6J1JBV1 uncharacterized protein LOC111483048

6.9e-106

91.48

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Query:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN
        MA LQILKSTVSPPSISQP FG+QSSRFFS+LDSTRRFVLLHGRRR+LRYG V RR SFRCAAQD+DKESNGEEPPESLFMKELKKRGITPTSLLEDT+N
Subjt:  MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNN

Query:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP
         DF LGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV+TVSFFFALYFFLGPSFVHD +KTPISPP
Subjt:  GDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPP

Query:  PYVDPYALLEDERISSQIAPRVN
        PYVDPYALLEDERI SQ+APRVN
Subjt:  PYVDPYALLEDERISSQIAPRVN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G50020.1 unknown protein

2.6e-49

62.8

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Query:  AAQDADKESNGEEPPESLFMKELKKRGITPTSLLED--TNNGDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIG
        A    D +S GEEPPESLFMKELK+RG+TPTSLL+D   +  + + G E TG +   S+ +A +   +KSL NQRERS+ LNSEGLEGLIPRA++LLTIG
Subjt:  AAQDADKESNGEEPPESLFMKELKKRGITPTSLLED--TNNGDFRLGGEMTGENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIG

Query:  GTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPPPYVDPYALLEDERISSQIAPRVN
        GTFFLGFWPLIV+T+  F ALY + G  F+HD S+TP+SPPPY+DPYALLEDERIS  + PR+N
Subjt:  GTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPPPYVDPYALLEDERISSQIAPRVN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTACTCTGCAAATTCTCAAATCAACCGTTTCTCCTCCTTCGATCTCTCAGCCGAATTTTGGTGCCCAATCAAGCCGGTTCTTCTCGGACTTGGATTCCACTAGGAG
GTTTGTACTGCTCCATGGACGTCGGAGGAATTTGCGATATGGCTACGTTTGTAGAAGGTTTAGTTTCCGTTGCGCTGCTCAGGATGCTGATAAGGAAAGCAATGGAGAAG
AACCTCCAGAATCATTATTCATGAAGGAACTGAAGAAGAGAGGTATAACTCCCACTTCCTTGCTTGAGGATACTAACAACGGTGACTTCAGACTCGGTGGCGAGATGACT
GGAGAAAACAGAGATTTCTCCCGTAGAAGTGCTGTTTCAACTGAAGTTAACAAAAGCCTATCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGGCTTGAGGG
GTTGATCCCTCGTGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCGTTGATCGTCATTACTGTTTCGTTCTTTTTTGCTTTATACTTTTTTC
TTGGACCATCTTTTGTTCATGATGCCAGCAAAACTCCAATATCTCCTCCACCGTACGTTGATCCATATGCTCTTTTGGAAGACGAGAGAATTTCTTCACAAATAGCTCCT
CGTGTAAATTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MATLQILKSTVSPPSISQPNFGAQSSRFFSDLDSTRRFVLLHGRRRNLRYGYVCRRFSFRCAAQDADKESNGEEPPESLFMKELKKRGITPTSLLEDTNNGDFRLGGEMT
GENRDFSRRSAVSTEVNKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVITVSFFFALYFFLGPSFVHDASKTPISPPPYVDPYALLEDERISSQIAP
RVN

CmUC10G191570 (gene) of Watermelon (USVL531) v1 genome