CuGenDBv2

Gene ID	CmUC10G192060
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Zinc finger swim domain-containing protein
Genome location	CmU531Chr10:22082757..22085783
RNA-Seq Expression	CmUC10G192060
Synteny	CmUC10G192060
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0006364 - rRNA processing (biological process) GO:0097196 - Shu complex (cellular component) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR007527 - Zinc finger, SWIM-type

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7030956.1 Zinc finger SWIM domain-containing protein 7 [Cucurbita argyrosperma subsp. argyrosperma]

2.2e-55

91.6

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC
        MSAS+L AEAVWKQIESTR VTDDQLS+LHFLFGKNFERATRIVDQ GVKKISGEPS RS+FQVVGESRRKEEY CFPENFCACY+FFYDIVNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLAAS+GACIEVK
Subjt:  KHQLAARLAASVGACIEVK

XP_004152266.1 zinc finger SWIM domain-containing protein 7 isoform X1 [Cucumis sativus]

1.9e-56

93.28

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC
        MSAS +VAEAVWKQIESTRLVTDDQLS+LHFLFGKNFERATRIVDQRGVKKISG PS RS+FQVVGESRRKEEY CFPENFCACY+FFYDIVNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLAASVGACIEVK
Subjt:  KHQLAARLAASVGACIEVK

XP_008454376.1 PREDICTED: zinc finger SWIM domain-containing protein 7 [Cucumis melo]

2.3e-57

94.12

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC
        MSAS +VAEAVWK+IESTRLVTDDQLS+LHFLFGKNFERATRIVDQRGVKKISG PSRRS+FQVVGESRRKEEYFCFPENFCACY+FFYDIVNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLAASVGACIEVK
Subjt:  KHQLAARLAASVGACIEVK

XP_022983272.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita maxima]

1.9e-56

92.44

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC
        MSAS+LVAEAVWKQIESTR VTDDQLS+LHFLFGKNFERATRIVDQ GVKKISGEPS RS+FQVVGESRRKEEYFCFPENFCACY+FFYDIVNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLAAS+GAC+EVK
Subjt:  KHQLAARLAASVGACIEVK

XP_038903696.1 zinc finger SWIM domain-containing protein 7 [Benincasa hispida]

1.5e-56

92.44

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC
        MSASSLVAEAVWKQIESTRLVTDDQLS+LHFLFGKNFERATRIVDQRGVKKISG+PS RS+FQV+GESRRKEEY CFPENFCACY+FFYDIVNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLA S+GACIEVK
Subjt:  KHQLAARLAASVGACIEVK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWG5 SWIM-type domain-containing protein

9.4e-57

93.28

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC
        MSAS +VAEAVWKQIESTRLVTDDQLS+LHFLFGKNFERATRIVDQRGVKKISG PS RS+FQVVGESRRKEEY CFPENFCACY+FFYDIVNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLAASVGACIEVK
Subjt:  KHQLAARLAASVGACIEVK

A0A1S3BZP2 zinc finger SWIM domain-containing protein 7

1.1e-57

94.12

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC
        MSAS +VAEAVWK+IESTRLVTDDQLS+LHFLFGKNFERATRIVDQRGVKKISG PSRRS+FQVVGESRRKEEYFCFPENFCACY+FFYDIVNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLAASVGACIEVK
Subjt:  KHQLAARLAASVGACIEVK

A0A6J1D5Z4 zinc finger SWIM domain-containing protein 7

5.7e-54

89.92

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC
        MSAS++VAEAVWKQI+STR VTDDQLSVLHFLFGKNFERATRIVDQRGVKKI GEPS RS+FQVVGESRRKEEYFCFPENFCACY+FFYD VNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLAAS+GA IE K
Subjt:  KHQLAARLAASVGACIEVK

A0A6J1FSJ7 zinc finger SWIM domain-containing protein 7 isoform X2

1.0e-55

91.6

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC
        MSAS+L AEAVWKQIESTR VTDDQLS+LHFLFGKNFERATRIVDQ GVKKISGEPS RS+FQVVGESRRKEEY CFPENFCACY+FFYDIVNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLAAS+GACIEVK
Subjt:  KHQLAARLAASVGACIEVK

A0A6J1J6W2 zinc finger SWIM domain-containing protein 7 isoform X2

9.4e-57

92.44

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC
        MSAS+LVAEAVWKQIESTR VTDDQLS+LHFLFGKNFERATRIVDQ GVKKISGEPS RS+FQVVGESRRKEEYFCFPENFCACY+FFYDIVNRGEQLCC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLAAS+GAC+EVK
Subjt:  KHQLAARLAASVGACIEVK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G33925.1 unknown protein

7.7e-43

65.55

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC
        M+ + LVA+AVW  IEST  VT++QLS+L  LFGKN E+ATRI+D+RGVKKISG PS RS+FQVVGES+++EEY CFP ++C CY+FFYD+V+RGE  CC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVK
        KHQLAARLA+S+G   E++
Subjt:  KHQLAARLAASVGACIEVK

AT4G33925.2 unknown protein

5.9e-43

63.93

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Query:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC
        M+ + LVA+AVW  IEST  VT++QLS+L  LFGKN E+ATRI+D+RGVKKISG PS RS+FQVVGES+++EEY CFP ++C CY+FFYD+V+RGE  CC
Subjt:  MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCC

Query:  KHQLAARLAASVGACIEVKCLR
        KHQLAARLA+S+G   E++  +
Subjt:  KHQLAARLAASVGACIEVKCLR

Sequences

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CDS sequence

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ATGAGTGCGAGTTCTCTGGTAGCTGAAGCTGTGTGGAAGCAGATCGAGTCGACTCGATTAGTGACTGATGATCAGCTTTCAGTCTTGCATTTCTTGTTTGGCAAG
AACTTCGAGCGAGCTACGCGAATTGTTGATCAAAGAGGAGTGAAGAAGATTTCAGGCGAGCCAAGCAGACGGTCTATGTTTCAGGTTGTGGGAGAATCTCGAAGG
AAAGAGGAGTATTTCTGTTTCCCAGAAAACTTTTGTGCCTGTTATGCCTTCTTCTATGACATTGTGAACAGAGGAGAACAACTTTGTTGCAAGCATCAGTTGGCT
GCAAGGCTTGCTGCTTCAGTGGGGGCTTGCATTGAAGTTAAATGCTTGAGGTTTGAGAGGTTACATCTTCATTTCTTGAAGGGCAGATGTAACTTTTTGGTGATG
TACAACACGAAATGTAGATTTTTTCCCACCTTCCATCTGAGATTGAACCTATTTAAGATTTAG

mRNA sequence

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Protein sequence

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MSASSLVAEAVWKQIESTRLVTDDQLSVLHFLFGKNFERATRIVDQRGVKKISGEPSRRSMFQVVGESRRKEEYFCFPENFCACYAFFYDIVNRGEQLCCKHQLA
ARLAASVGACIEVKCLRFERLHLHFLKGRCNFLVMYNTKCRFFPTFHLRLNLFKI

CmUC10G192060 (gene) of Watermelon (USVL531) v1 genome