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CmUC10G192770 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC10G192770
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRNase H domain-containing protein
Genome locationCmU531Chr10:23534880..23539303
RNA-Seq ExpressionCmUC10G192770
SyntenyCmUC10G192770
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.5e-0730Show/hide
Query:  WILSVDTAWKNDPLMSEWSAVIQDERNILQAVLIDARMIALKPPLA--ELFAILEGLRLAPRPNFSKIQVESDYLEAMKLIHKLTTSFNENRRCW-LSEI
        W L+ + AW+ D        +++DE+   + +    R+I  +  +   E+ AI EGLR   + +   I +ESD LEA+ L+H+     ++    W L EI
Subjt:  WILSVDTAWKNDPLMSEWSAVIQDERNILQAVLIDARMIALKPPLA--ELFAILEGLRLAPRPNFSKIQVESDYLEAMKLIHKLTTSFNENRRCW-LSEI

Query:  WEILKDFDVANVIHVNKKCNWLANTLAKRA
        W+++KD ++ ++ H++++ N +A+ LA+RA
Subjt:  WEILKDFDVANVIHVNKKCNWLANTLAKRA

XP_022155289.1 uncharacterized protein LOC111022426 [Momordica charantia]8.1e-0932.88Show/hide
Query:  FNSSFVDRWVSMNQNCKRDEIGLYAICCRALWEDRNKFLYSLPVPSIEVKSRWILSVDTAWKNDPL------------MSEWSAV---IQDERNILQAVL
        FN  +++RW    +N     + L  I C ALW D N  +    +P   +K R  +    AW+  PL             +E S V   ++D    + A +
Subjt:  FNSSFVDRWVSMNQNCKRDEIGLYAICCRALWEDRNKFLYSLPVPSIEVKSRWILSVDTAWKNDPL------------MSEWSAV---IQDERNILQAVL

Query:  IDARMIALKPPLAELFAILEGLRLAPRPNFSKIQVESDYLEAMKLI
        ID  ++   P L E+ AI EGLRLA R    ++ VESD LEA+ LI
Subjt:  IDARMIALKPPLAELFAILEGLRLAPRPNFSKIQVESDYLEAMKLI

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]5.1e-1127.31Show/hide
Query:  LRVVFADFNSSFVDRWVSMNQNCKRDEIGLYAICCRALWEDRNKFLYSLPVPSIEVKSRWI--------------LSVDTAWKNDPLMSEW---------
        L  + A+ N SF++ W S+ +  +  ++ L AI    +W DRN  ++   V  +E K  W+               S  T   + P++  W         
Subjt:  LRVVFADFNSSFVDRWVSMNQNCKRDEIGLYAICCRALWEDRNKFLYSLPVPSIEVKSRWI--------------LSVDTAWKNDPLMSEW---------

Query:  --------------SAVIQDERNILQAVLIDARMIALKPPLAELFAILEGLRLAPRPNFSKIQVESDYLEAMKLI-HKLTTSFNENRRCWLSEIWEILKD
                        +I+D    L A         L P LAE+  ILEGL+ A   NF+ ++VESD L A++LI +++ T  +E    W+ EI  +   
Subjt:  --------------SAVIQDERNILQAVLIDARMIALKPPLAELFAILEGLRLAPRPNFSKIQVESDYLEAMKLI-HKLTTSFNENRRCWLSEIWEILKD

Query:  FDVANVIHVNKKCNWLANTLAKRARTS
        F   +  H +++CN  A+ LAK   TS
Subjt:  FDVANVIHVNKKCNWLANTLAKRARTS

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]2.0e-0726.21Show/hide
Query:  QNCKRDEIGLYAICCRALWEDRNKFLYSLPVPSIEVKSRWIL----SVDTAWKND-----PLMSEW-------------SAVIQDERNI----------L
        QN    E+ L  I C ALW DR+  +    +P   +K  WIL     V   + N      P ++EW             +AV ++   +          +
Subjt:  QNCKRDEIGLYAICCRALWEDRNKFLYSLPVPSIEVKSRWIL----SVDTAWKND-----PLMSEW-------------SAVIQDERNI----------L

Query:  QAVLIDARMIALKPPLAELFAILEGLRLAPRPNFSKIQVESDYLEAMKLIHKLTTSFNENRRCWLSEIWEILKDFDVANVIHVNKKCNWLANTLAKRART
           ++D  M+   P LA++ AI EGL LA R    ++ VE+D LEA+ LI    + +      W+ +I    +DF      HV ++ N +A  L +   +
Subjt:  QAVLIDARMIALKPPLAELFAILEGLRLAPRPNFSKIQVESDYLEAMKLIHKLTTSFNENRRCWLSEIWEILKDFDVANVIHVNKKCNWLANTLAKRART

Query:  STCSYV
          C ++
Subjt:  STCSYV

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]2.6e-1542.86Show/hide
Query:  LSVDTAWKNDPLMSEWSAVIQDERNILQAVLIDARMIALKPPLAELFAILEGLRLAPRPNFSKIQVESDYLEAMKLIHKLTTSFNENRRCWLSEIWEILK
        L+VD AWK  P  S +SA+I+D +  L+ V I +      PPLAE F +L+GLRL  + NF KI V+SD   A+ L  K+  S + + R WL EIWEI  
Subjt:  LSVDTAWKNDPLMSEWSAVIQDERNILQAVLIDARMIALKPPLAELFAILEGLRLAPRPNFSKIQVESDYLEAMKLIHKLTTSFNENRRCWLSEIWEILK

Query:  DFDVANVIHVNKKCNWLANTLAKRAR
         F   N  ++ +  N LA+ +AKR R
Subjt:  DFDVANVIHVNKKCNWLANTLAKRAR

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134127.4e-0830Show/hide
Query:  WILSVDTAWKNDPLMSEWSAVIQDERNILQAVLIDARMIALKPPLA--ELFAILEGLRLAPRPNFSKIQVESDYLEAMKLIHKLTTSFNENRRCW-LSEI
        W L+ + AW+ D        +++DE+   + +    R+I  +  +   E+ AI EGLR   + +   I +ESD LEA+ L+H+     ++    W L EI
Subjt:  WILSVDTAWKNDPLMSEWSAVIQDERNILQAVLIDARMIALKPPLA--ELFAILEGLRLAPRPNFSKIQVESDYLEAMKLIHKLTTSFNENRRCW-LSEI

Query:  WEILKDFDVANVIHVNKKCNWLANTLAKRA
        W+++KD ++ ++ H++++ N +A+ LA+RA
Subjt:  WEILKDFDVANVIHVNKKCNWLANTLAKRA

A0A6J1DPU1 uncharacterized protein LOC1110224263.9e-0932.88Show/hide
Query:  FNSSFVDRWVSMNQNCKRDEIGLYAICCRALWEDRNKFLYSLPVPSIEVKSRWILSVDTAWKNDPL------------MSEWSAV---IQDERNILQAVL
        FN  +++RW    +N     + L  I C ALW D N  +    +P   +K R  +    AW+  PL             +E S V   ++D    + A +
Subjt:  FNSSFVDRWVSMNQNCKRDEIGLYAICCRALWEDRNKFLYSLPVPSIEVKSRWILSVDTAWKNDPL------------MSEWSAV---IQDERNILQAVL

Query:  IDARMIALKPPLAELFAILEGLRLAPRPNFSKIQVESDYLEAMKLI
        ID  ++   P L E+ AI EGLRLA R    ++ VESD LEA+ LI
Subjt:  IDARMIALKPPLAELFAILEGLRLAPRPNFSKIQVESDYLEAMKLI

A0A6J1DSV1 uncharacterized protein LOC1110236088.2e-0729.71Show/hide
Query:  WILSVDTAWKNDPLMSEWSAVIQDERNILQAVLIDARMIALKPPLA--ELFAILEGLRLAPRPNFSKIQ--------VESDYLEAMKLIHKLTTSFNENR
        W L+ D AW+ D        +++DE+   + +  D R+I  +  +   E+ AI EGLR   + +   IQ        +ESD LEA+ L+H+     ++  
Subjt:  WILSVDTAWKNDPLMSEWSAVIQDERNILQAVLIDARMIALKPPLA--ELFAILEGLRLAPRPNFSKIQ--------VESDYLEAMKLIHKLTTSFNENR

Query:  RCW-LSEIWEILKDFDVANVIHVNKKCNWLANTLAKRA
          W L EIW++++D  + ++ H++++ N +A+ LA+RA
Subjt:  RCW-LSEIWEILKDFDVANVIHVNKKCNWLANTLAKRA

A0A6J1DX30 uncharacterized protein LOC1110248742.5e-1127.31Show/hide
Query:  LRVVFADFNSSFVDRWVSMNQNCKRDEIGLYAICCRALWEDRNKFLYSLPVPSIEVKSRWI--------------LSVDTAWKNDPLMSEW---------
        L  + A+ N SF++ W S+ +  +  ++ L AI    +W DRN  ++   V  +E K  W+               S  T   + P++  W         
Subjt:  LRVVFADFNSSFVDRWVSMNQNCKRDEIGLYAICCRALWEDRNKFLYSLPVPSIEVKSRWI--------------LSVDTAWKNDPLMSEW---------

Query:  --------------SAVIQDERNILQAVLIDARMIALKPPLAELFAILEGLRLAPRPNFSKIQVESDYLEAMKLI-HKLTTSFNENRRCWLSEIWEILKD
                        +I+D    L A         L P LAE+  ILEGL+ A   NF+ ++VESD L A++LI +++ T  +E    W+ EI  +   
Subjt:  --------------SAVIQDERNILQAVLIDARMIALKPPLAELFAILEGLRLAPRPNFSKIQVESDYLEAMKLI-HKLTTSFNENRRCWLSEIWEILKD

Query:  FDVANVIHVNKKCNWLANTLAKRARTS
        F   +  H +++CN  A+ LAK   TS
Subjt:  FDVANVIHVNKKCNWLANTLAKRARTS

A0A6J1DZK3 uncharacterized protein LOC1110249689.7e-0826.21Show/hide
Query:  QNCKRDEIGLYAICCRALWEDRNKFLYSLPVPSIEVKSRWIL----SVDTAWKND-----PLMSEW-------------SAVIQDERNI----------L
        QN    E+ L  I C ALW DR+  +    +P   +K  WIL     V   + N      P ++EW             +AV ++   +          +
Subjt:  QNCKRDEIGLYAICCRALWEDRNKFLYSLPVPSIEVKSRWIL----SVDTAWKND-----PLMSEW-------------SAVIQDERNI----------L

Query:  QAVLIDARMIALKPPLAELFAILEGLRLAPRPNFSKIQVESDYLEAMKLIHKLTTSFNENRRCWLSEIWEILKDFDVANVIHVNKKCNWLANTLAKRART
           ++D  M+   P LA++ AI EGL LA R    ++ VE+D LEA+ LI    + +      W+ +I    +DF      HV ++ N +A  L +   +
Subjt:  QAVLIDARMIALKPPLAELFAILEGLRLAPRPNFSKIQVESDYLEAMKLIHKLTTSFNENRRCWLSEIWEILKDFDVANVIHVNKKCNWLANTLAKRART

Query:  STCSYV
          C ++
Subjt:  STCSYV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGATGCGTCTGGGTGTGACTGCGAGGGTGAGGGTATGGGACTCCGCTCGGTGCCTTGTTTGTGCGGGTCGTGAGAAGGTGCCAGAGTGTTGGGCTATTAAAAATCT
AGAGGCTCGTGTAGTCATCAAGGGCTTGACTGATCTCTTGCTTCGAGTGGTCTTTGCTGATTTCAACTCTTCCTTTGTGGACAGGTGGGTTTCCATGAATCAAAACTGTA
AAAGAGATGAAATTGGTTTATATGCCATTTGCTGCCGGGCCTTATGGGAAGATAGAAACAAATTTCTCTATAGTTTACCTGTTCCTAGTATTGAAGTGAAGAGCCGCTGG
ATTCTGAGTGTCGATACAGCCTGGAAAAATGATCCTCTTATGTCGGAATGGAGTGCTGTAATTCAGGATGAAAGAAATATCTTACAAGCTGTGCTGATAGACGCAAGGAT
GATTGCTTTGAAGCCCCCGTTGGCGGAGTTGTTTGCGATTCTGGAAGGACTCCGGCTGGCTCCTAGACCAAACTTTTCCAAAATTCAAGTGGAATCCGATTACCTTGAAG
CAATGAAACTGATCCACAAATTGACAACATCATTCAATGAAAATCGTCGTTGCTGGCTCTCAGAGATTTGGGAGATCTTAAAGGATTTTGATGTAGCTAATGTGATTCAT
GTAAACAAAAAGTGTAATTGGTTAGCCAACACTTTAGCAAAGAGGGCTAGAACGAGTACTTGTAGTTATGTTATTTCCCTTCGTGGATGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGATGCGTCTGGGTGTGACTGCGAGGGTGAGGGTATGGGACTCCGCTCGGTGCCTTGTTTGTGCGGGTCGTGAGAAGGTGCCAGAGTGTTGGGCTATTAAAAATCT
AGAGGCTCGTGTAGTCATCAAGGGCTTGACTGATCTCTTGCTTCGAGTGGTCTTTGCTGATTTCAACTCTTCCTTTGTGGACAGGTGGGTTTCCATGAATCAAAACTGTA
AAAGAGATGAAATTGGTTTATATGCCATTTGCTGCCGGGCCTTATGGGAAGATAGAAACAAATTTCTCTATAGTTTACCTGTTCCTAGTATTGAAGTGAAGAGCCGCTGG
ATTCTGAGTGTCGATACAGCCTGGAAAAATGATCCTCTTATGTCGGAATGGAGTGCTGTAATTCAGGATGAAAGAAATATCTTACAAGCTGTGCTGATAGACGCAAGGAT
GATTGCTTTGAAGCCCCCGTTGGCGGAGTTGTTTGCGATTCTGGAAGGACTCCGGCTGGCTCCTAGACCAAACTTTTCCAAAATTCAAGTGGAATCCGATTACCTTGAAG
CAATGAAACTGATCCACAAATTGACAACATCATTCAATGAAAATCGTCGTTGCTGGCTCTCAGAGATTTGGGAGATCTTAAAGGATTTTGATGTAGCTAATGTGATTCAT
GTAAACAAAAAGTGTAATTGGTTAGCCAACACTTTAGCAAAGAGGGCTAGAACGAGTACTTGTAGTTATGTTATTTCCCTTCGTGGATGTTGA
Protein sequenceShow/hide protein sequence
MLMRLGVTARVRVWDSARCLVCAGREKVPECWAIKNLEARVVIKGLTDLLLRVVFADFNSSFVDRWVSMNQNCKRDEIGLYAICCRALWEDRNKFLYSLPVPSIEVKSRW
ILSVDTAWKNDPLMSEWSAVIQDERNILQAVLIDARMIALKPPLAELFAILEGLRLAPRPNFSKIQVESDYLEAMKLIHKLTTSFNENRRCWLSEIWEILKDFDVANVIH
VNKKCNWLANTLAKRARTSTCSYVISLRGC