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CmUC10G201190 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC10G201190
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Description50S ribosomal protein L23, chloroplastic
Genome locationCmU531Chr10:33139302..33139577
RNA-Seq ExpressionCmUC10G201190
SyntenyCmUC10G201190
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001014 - Ribosomal protein L23/L25, conserved site
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR013025 - Ribosomal protein L25/L23


Homology Show/hide homology
GenBank top hitse value%identityAlignment
YP_009236321.1 ribosomal protein L23 [Gynostemma pentaphyllum]6.2e-2974.19Show/hide
Query:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
        MDGIKYTVFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
YP_009445195.1 50S ribosomal protein L23 [Bertholletia excelsa]6.2e-2974.19Show/hide
Query:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
        MDGIKYTVFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
YP_009708687.1 ribosomal protein L23 [Elytranthe albida]4.7e-2974.19Show/hide
Query:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
        MDGIKYTVFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
YP_009766046.1 ribosomal protein L23 [Amherstia nobilis]4.7e-2974.19Show/hide
Query:  MDGIKYTVFTDKR------------------STKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
        MDGIKY VFTDKR                   T+IKHWVELFFGVKVIAMNSHRLPGKGR MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYTVFTDKR------------------STKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
YP_009921965.1 ribosomal protein L23 [Disanthus cercidifolius subsp. longipes]6.2e-2974.19Show/hide
Query:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
        MDGIKYTVFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
TrEMBL top hitse value%identityAlignment
A0A2H4NTR2 50S ribosomal protein L23, chloroplastic3.0e-2974.19Show/hide
Query:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
        MDGIKYTVFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
A0A2H4NVJ2 50S ribosomal protein L23, chloroplastic3.0e-2974.19Show/hide
Query:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
        MDGIKYTVFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
A0A5J6KGS3 50S ribosomal protein L23, chloroplastic2.3e-2974.19Show/hide
Query:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
        MDGIKYTVFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
A0A5P9S1K9 50S ribosomal protein L23, chloroplastic2.3e-2974.19Show/hide
Query:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
        MDGIKYTVFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
A0A6H0E3L6 50S ribosomal protein L23, chloroplastic2.3e-2974.19Show/hide
Query:  MDGIKYTVFTDKR------------------STKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
        MDGIKY VFTDKR                   T+IKHWVELFFGVKVIAMNSHRLPGKGR MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYTVFTDKR------------------STKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
SwissProt top hitse value%identityAlignment
A0A378 50S ribosomal protein L23, chloroplastic3.1e-3173.12Show/hide
Query:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
        MDGIKY VFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
Q09FP7 50S ribosomal protein L23, chloroplastic3.1e-3173.12Show/hide
Query:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
        MDGIKY VFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
Q09FY4 50S ribosomal protein L23, chloroplastic3.1e-3173.12Show/hide
Query:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
        MDGIKY VFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
Q0ZIV5 50S ribosomal protein L23, chloroplastic3.1e-3173.12Show/hide
Query:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
        MDGIKY VFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
Q4VZK6 50S ribosomal protein L23, chloroplastic3.1e-3173.12Show/hide
Query:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
        MDGIKY VFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
Arabidopsis top hitse value%identityAlignment
ATCG00840.1 ribosomal protein L23.11.2e-3069.89Show/hide
Query:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
        MDGIKY VFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGK + MGPI+GH MHY+RMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
ATCG01300.1 ribosomal protein L231.2e-3069.89Show/hide
Query:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT
        MDGIKY VFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGK + MGPI+GH MHY+RMIITLQPGYSIPPLRKKRT
Subjt:  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGAATCAAATATACAGTATTTACAGACAAAAGATCAACTAAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACT
CCCGGGAAAGGGTAGAATAATGGGACCTATTATGGGACATATAATGCATTACAAACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAA
GAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGAATCAAATATACAGTATTTACAGACAAAAGATCAACTAAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACT
CCCGGGAAAGGGTAGAATAATGGGACCTATTATGGGACATATAATGCATTACAAACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAA
GAACTTGA
Protein sequenceShow/hide protein sequence
MDGIKYTVFTDKRSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT