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CmUC10G202040 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC10G202040
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionGlycine-rich RNA-binding protein 4
Genome locationCmU531Chr10:33821435..33825459
RNA-Seq ExpressionCmUC10G202040
SyntenyCmUC10G202040
Gene Ontology termsGO:0080156 - mitochondrial mRNA modification (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8013940.1 hypothetical protein BT93_I1716 [Corymbia citriodora subsp. variegata]6.8e-1277.55Show/hide
Query:  PIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG
        PIPS TLFVSGLNKRTT+E L EAF +FG+VV A++VTDRNSG+SKGFG
Subjt:  PIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG

XP_002263021.1 PREDICTED: glycine-rich RNA-binding protein blt801 [Vitis vinifera]4.0e-1264.06Show/hide
Query:  PIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFGPLFDLEACGLERGFK
        PIPSTTLF+SGLNKRTTSE L E   +FGEVV AR+VTDR+SG+SKGFG +        E+G K
Subjt:  PIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFGPLFDLEACGLERGFK

XP_018831311.1 organelle RRM domain-containing protein 2, mitochondrial-like [Juglans regia]4.0e-1267.74Show/hide
Query:  PSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFGPLFDLEACGLERGFK
        PSTTLFVSGLNKRTTSE L E F +FGEVV AR+VTDRNSG+SKGFG +        E+G K
Subjt:  PSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFGPLFDLEACGLERGFK

XP_042940066.1 organelle RRM domain-containing protein 2, mitochondrial-like isoform X1 [Carya illinoinensis]1.8e-1246.15Show/hide
Query:  IKMGIFFRNFNVNIILSTNFDNTAVPINLFGISLQSEP---IPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFGPLFDLEACGLE
        ++ G+  R  + ++  S +F  T    +    +  S+     PSTTLFVSGLNKRTTSE L E+F +FGEVV AR+VTDRNSG+SKGFG +        E
Subjt:  IKMGIFFRNFNVNIILSTNFDNTAVPINLFGISLQSEP---IPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFGPLFDLEACGLE

Query:  RGFK
        +G K
Subjt:  RGFK

XP_042940068.1 organelle RRM domain-containing protein 2, mitochondrial-like isoform X3 [Carya illinoinensis]1.8e-1246.15Show/hide
Query:  IKMGIFFRNFNVNIILSTNFDNTAVPINLFGISLQSEP---IPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFGPLFDLEACGLE
        ++ G+  R  + ++  S +F  T    +    +  S+     PSTTLFVSGLNKRTTSE L E+F +FGEVV AR+VTDRNSG+SKGFG +        E
Subjt:  IKMGIFFRNFNVNIILSTNFDNTAVPINLFGISLQSEP---IPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFGPLFDLEACGLE

Query:  RGFK
        +G K
Subjt:  RGFK

TrEMBL top hitse value%identityAlignment
A0A059AM75 RRM domain-containing protein7.3e-1275.51Show/hide
Query:  PIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG
        PIPS TLFVSGLNKRTT+E L E+F +FG+VV A++VTDRNSG+SKGFG
Subjt:  PIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG

A0A218VVN7 RRM domain-containing protein3.3e-1254.32Show/hide
Query:  RNFNVNIILSTNFDNTAVPINLFGISLQSE--PIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG
        R F      S+ F   A  +   G +   +  P+PS TLFVSGLNKRTTSE L EAF +FG+VV A++VTDRN+GFSKGFG
Subjt:  RNFNVNIILSTNFDNTAVPINLFGISLQSE--PIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG

A0A2I0I5X5 organelle RRM domain-containing protein 2, mitochondrial-like3.3e-1254.32Show/hide
Query:  RNFNVNIILSTNFDNTAVPINLFGISLQSE--PIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG
        R F      S+ F   A  +   G +   +  P+PS TLFVSGLNKRTTSE L EAF +FG+VV A++VTDRN+GFSKGFG
Subjt:  RNFNVNIILSTNFDNTAVPINLFGISLQSE--PIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG

A0A2I4FI37 organelle RRM domain-containing protein 2, mitochondrial-like1.9e-1267.74Show/hide
Query:  PSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFGPLFDLEACGLERGFK
        PSTTLFVSGLNKRTTSE L E F +FGEVV AR+VTDRNSG+SKGFG +        E+G K
Subjt:  PSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFGPLFDLEACGLERGFK

D7THR4 RRM domain-containing protein1.9e-1264.06Show/hide
Query:  PIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFGPLFDLEACGLERGFK
        PIPSTTLF+SGLNKRTTSE L E   +FGEVV AR+VTDR+SG+SKGFG +        E+G K
Subjt:  PIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFGPLFDLEACGLERGFK

SwissProt top hitse value%identityAlignment
P08199 Nucleolin7.5e-0661.7Show/hide
Query:  PSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG
        PS TLFV GL++ TT E L E+F      VRARIVTDR +G SKGFG
Subjt:  PSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG

P09405 Nucleolin5.8e-0648.48Show/hide
Query:  DNTAVPINLFGISLQSEPIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG
        +   + + L G + +S+  PS TLFV GL++ TT E L E+F      VRARIVTDR +G SKGFG
Subjt:  DNTAVPINLFGISLQSEPIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG

P13383 Nucleolin7.5e-0661.7Show/hide
Query:  PSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG
        PS TLFV GL++ TT E L E+F      VRARIVTDR +G SKGFG
Subjt:  PSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG

P19338 Nucleolin9.8e-0661.7Show/hide
Query:  PSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG
        PS TLFV GL++ TT E L E+   F   VRARIVTDR +G SKGFG
Subjt:  PSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG

Q9FIU6 Organelle RRM domain-containing protein 2, mitochondrial2.7e-1172.34Show/hide
Query:  PSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG
        PST LFVSGL+KRTTSE L  AF +FGEV  A++VTDR SG+SKGFG
Subjt:  PSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG

Arabidopsis top hitse value%identityAlignment
AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.6e-0958.33Show/hide
Query:  IPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG
        + S  LFVSGL++ TT+E L +AF  FG++V AR++TDR+SG SKGFG
Subjt:  IPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG

AT4G13850.1 glycine-rich RNA-binding protein 23.5e-0645.28Show/hide
Query:  LQSEPIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG
        L S  + ST LF+ GL+  T   +L +AF  FG+VV A+++ DR +G S+GFG
Subjt:  LQSEPIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG

AT4G13850.2 glycine-rich RNA-binding protein 23.5e-0645.28Show/hide
Query:  LQSEPIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG
        L S  + ST LF+ GL+  T   +L +AF  FG+VV A+++ DR +G S+GFG
Subjt:  LQSEPIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG

AT4G13850.3 glycine-rich RNA-binding protein 23.5e-0645.28Show/hide
Query:  LQSEPIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG
        L S  + ST LF+ GL+  T   +L +AF  FG+VV A+++ DR +G S+GFG
Subjt:  LQSEPIPSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG

AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.9e-1272.34Show/hide
Query:  PSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG
        PST LFVSGL+KRTTSE L  AF +FGEV  A++VTDR SG+SKGFG
Subjt:  PSTTLFVSGLNKRTTSENLGEAFPEFGEVVRARIVTDRNSGFSKGFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGTCAACACATTGGTAAAGCTAAAGATGATGATTACACAAGAACATATTTAGAGCTGATAAGATTCTTATGGAAGTGGATATCAAATCCCACATGGGTCGCTCA
TGTTTTGCTGAGGGAAAGGGATGACCTGTCTTGCCCCCTCTGGAGAATAAAGATGGGAATATTTTTTCGAAATTTTAATGTGAACATTATACTGTCTACCAATTTTGATA
ATACTGCCGTACCAATTAATCTCTTTGGAATCTCTCTCCAATCTGAGCCGATTCCTTCCACGACCCTTTTCGTCTCCGGGCTGAATAAGAGAACTACATCTGAAAACCTT
GGGGAAGCATTCCCCGAATTCGGTGAAGTTGTTCGTGCTAGAATTGTGACGGATCGTAATTCTGGATTTTCAAAGGGCTTTGGACCATTATTTGACCTTGAAGCATGTGG
ACTTGAGAGAGGATTTAAGTTAAGTTTCTTGACGGATGATGCTTGTAAGGAGATTCAACTCATCCATTTGGTTGCTCCAGATTTTGGAGATTTTCTTGACTGTCCCATTG
ATAAAATTGTTGTAAAGGATTCTTTTCCCAATTTGATGATGGATTTGATACAAATTCAACAGTCAAGCCAGTTGAAATTATTAGTTTTCAGTCCTCGTCCAAACTGTCTT
CTTCGATCATTGGGAAAGATATGCAAATTATCGTATTCGAGAAGGGAAGAACGCCAACAATTTACAGAAAGCATTCTTGCCTTCCTTGATATTTACATCCACGATCGAAT
AAGATGGGAAATTCACGAGCATTCTGAACAATGTAAGAAATTGAGCAGTGCATTTACATACGACCTTAAGACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGGTCAACACATTGGTAAAGCTAAAGATGATGATTACACAAGAACATATTTAGAGCTGATAAGATTCTTATGGAAGTGGATATCAAATCCCACATGGGTCGCTCA
TGTTTTGCTGAGGGAAAGGGATGACCTGTCTTGCCCCCTCTGGAGAATAAAGATGGGAATATTTTTTCGAAATTTTAATGTGAACATTATACTGTCTACCAATTTTGATA
ATACTGCCGTACCAATTAATCTCTTTGGAATCTCTCTCCAATCTGAGCCGATTCCTTCCACGACCCTTTTCGTCTCCGGGCTGAATAAGAGAACTACATCTGAAAACCTT
GGGGAAGCATTCCCCGAATTCGGTGAAGTTGTTCGTGCTAGAATTGTGACGGATCGTAATTCTGGATTTTCAAAGGGCTTTGGACCATTATTTGACCTTGAAGCATGTGG
ACTTGAGAGAGGATTTAAGTTAAGTTTCTTGACGGATGATGCTTGTAAGGAGATTCAACTCATCCATTTGGTTGCTCCAGATTTTGGAGATTTTCTTGACTGTCCCATTG
ATAAAATTGTTGTAAAGGATTCTTTTCCCAATTTGATGATGGATTTGATACAAATTCAACAGTCAAGCCAGTTGAAATTATTAGTTTTCAGTCCTCGTCCAAACTGTCTT
CTTCGATCATTGGGAAAGATATGCAAATTATCGTATTCGAGAAGGGAAGAACGCCAACAATTTACAGAAAGCATTCTTGCCTTCCTTGATATTTACATCCACGATCGAAT
AAGATGGGAAATTCACGAGCATTCTGAACAATGTAAGAAATTGAGCAGTGCATTTACATACGACCTTAAGACTTGAACATGGATAAAAAAAGGCCAACATTTCTGAAGTT
GAAATGTGGGGAGACAACAGTAGATTTAAAAATAAGTTTCAGTATTGATATTAACCAAATGATCAGCCATTTCTCAAGAATCATGACTTCGATGATCAGTGTTGGGTTCC
ATCAAAATGAGACCAGATGCATAAGACTAATGACGTAAATCGGAAAAAAAAATA
Protein sequenceShow/hide protein sequence
MAGQHIGKAKDDDYTRTYLELIRFLWKWISNPTWVAHVLLRERDDLSCPLWRIKMGIFFRNFNVNIILSTNFDNTAVPINLFGISLQSEPIPSTTLFVSGLNKRTTSENL
GEAFPEFGEVVRARIVTDRNSGFSKGFGPLFDLEACGLERGFKLSFLTDDACKEIQLIHLVAPDFGDFLDCPIDKIVVKDSFPNLMMDLIQIQQSSQLKLLVFSPRPNCL
LRSLGKICKLSYSRREERQQFTESILAFLDIYIHDRIRWEIHEHSEQCKKLSSAFTYDLKT