CuGenDBv2

Gene ID	CmUC11G205230
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	RING-box protein
Genome location	CmU531Chr11:1622426..1624870
RNA-Seq Expression	CmUC11G205230
Synteny	CmUC11G205230
Gene Ontology terms	GO:0006511 - ubiquitin-dependent protein catabolic process (biological process) GO:0009733 - response to auxin (biological process) GO:0016567 - protein ubiquitination (biological process) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0008270 - zinc ion binding (molecular function) GO:0061630 - ubiquitin protein ligase activity (molecular function) GO:0097602 - cullin family protein binding (molecular function)
InterPro domains	IPR001841 - Zinc finger, RING-type IPR013083 - Zinc finger, RING/FYVE/PHD-type IPR024766 - Zinc finger, RING-H2-type

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6733266.1 hypothetical protein I3842_01G218000 [Carya illinoinensis]

7.7e-15

94.87

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Query:  ILKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        I+ RVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  ILKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

KYP37005.1 RING-box protein 1a [Cajanus cajan]

1.0e-14

66.67

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Query:  SYLSQIEPICSKLT---WKAKILKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        +Y++ ++ +CS L    W       VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  SYLSQIEPICSKLT---WKAKILKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

VDD20084.1 unnamed protein product [Brassica oleracea]

3.4e-15

79.59

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Query:  ICSKLTWKAKILKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        +CS L    + + RVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  ICSKLTWKAKILKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

VDD33108.1 unnamed protein product [Brassica oleracea]

1.3e-14

97.3

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Query:  KRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        +RVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  KRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

XP_016433387.1 PREDICTED: RING-box protein 1a isoform X1 [Nicotiana tabacum]

1.0e-14

94.87

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Query:  ILKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        IL+ VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  ILKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

TrEMBL top hits

e value

%identity

Alignment

A0A151R3F8 RING-box protein 1a

4.8e-15

66.67

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Query:  SYLSQIEPICSKLT---WKAKILKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        +Y++ ++ +CS L    W       VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  SYLSQIEPICSKLT---WKAKILKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

A0A1S3X0G1 RING-box protein 1a isoform X1

4.8e-15

94.87

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Query:  ILKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        IL+ VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  ILKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

A0A3P6D607 RING-type domain-containing protein

1.7e-15

79.59

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Query:  ICSKLTWKAKILKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        +CS L    + + RVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  ICSKLTWKAKILKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

A0A3P6E193 zf-rbx1 domain-containing protein

6.3e-15

97.3

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Query:  KRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        +RVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  KRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

A0A5C7HYE9 zf-rbx1 domain-containing protein

6.3e-15

94.74

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Query:  LKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        + RVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  LKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

SwissProt top hits

e value

%identity

Alignment

P62877 E3 ubiquitin-protein ligase RBX1

3.2e-16

97.14

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Query:  VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        VCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Subjt:  VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

P62878 E3 ubiquitin-protein ligase RBX1

3.2e-16

97.14

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Query:  VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        VCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Subjt:  VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

Q8QG64 RING-box protein 1

3.2e-16

97.14

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Query:  VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        VCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Subjt:  VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

Q940X7 RING-box protein 1a

8.5e-17

100

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Query:  VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

Q9W5E1 RING-box protein 1A

7.2e-16

94.29

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Query:  VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        VCNHAFHFHCISRWLKTRQVCPLDN EW+FQKYGH
Subjt:  VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

Arabidopsis top hits

e value

%identity

Alignment

AT3G05870.1 anaphase-promoting complex/cyclosome 11

1.3e-04

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Query:  CNHAFHFHCISRWL--KTRQV-CPLDNSEWEFQK
        CNHAFH HCI +W+  +T Q  CP+   EW+F++
Subjt:  CNHAFHFHCISRWL--KTRQV-CPLDNSEWEFQK

AT3G42830.1 RING/U-box superfamily protein

2.5e-16

94.29

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Query:  VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        VCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Subjt:  VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

AT5G20570.1 RING-box 1

6.0e-18

100

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Query:  VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

AT5G20570.2 RING-box 1

2.7e-18

94.74

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Query:  LKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        L+ VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  LKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

AT5G20570.3 RING-box 1

6.0e-18

100

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Query:  VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  VCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

Sequences

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CDS sequence

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ATGTGCCCATGGTTCCGGCCGGCGAGGCTTCGAGCAGTTCCGGTCCTTCATCCACCAAGAAACCCAAGCGTTTCGAGATCAAAAAGTGGAACGCCGTCGCTCTTT
GGGCATGGGATATTGTTGTCGATAATTGTGCGATCTGTAGGAATCATATCATGGATCTCTGTATTGAGTGTCAAGCAAACCAGGCTAGCGCAACCAGCGAGGAAT
GTACTGTGGCTTGGGGTACGTTTTCTTATTCCCTCTCCCTATCTCCAACCCATTCACAGAGATACAATATGTGCTATTATTTTCAATGCCTTTGAGGATACCAAA
GTGTGGTCTATCCATATTAGTGATTTAATTACTTCAGCCACTCGACCTTTTTTTGTTTTCTTTTTGGTCAATCGCTCTACCCTTAAAATTTTTTCCTACCTTAGC
CAGATTGAGCCTATCTGTAGTAAGCTAACCTGGAAGGCTAAAATTCTGAAAAGGGTGTGTAATCATGCATTTCATTTCCATTGTATCAGTAGATGGTTGAAGACA
CGTCAAGTTTGTCCATTGGATAATAGCGAGTGGGAGTTTCAGAAGTACGGTCACTAG

mRNA sequence

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GGGAACATAAAAAATTTAAGAGCCAACTAGAGGAATTAAGTCCGCCGTTGCCGACGGAGGAGGAATAAGCATTTTTATCCCAAGTTATTTATGGCCACCTTGGAC
TCCGATGTGCCCATGGTTCCGGCCGGCGAGGCTTCGAGCAGTTCCGGTCCTTCATCCACCAAGAAACCCAAGCGTTTCGAGATCAAAAAGTGGAACGCCGTCGCT
CTTTGGGCATGGGATATTGTTGTCGATAATTGTGCGATCTGTAGGAATCATATCATGGATCTCTGTATTGAGTGTCAAGCAAACCAGGCTAGCGCAACCAGCGAG
GAATGTACTGTGGCTTGGGGTACGTTTTCTTATTCCCTCTCCCTATCTCCAACCCATTCACAGAGATACAATATGTGCTATTATTTTCAATGCCTTTGAGGATAC
CAAAGTGTGGTCTATCCATATTAGTGATTTAATTACTTCAGCCACTCGACCTTTTTTTGTTTTCTTTTTGGTCAATCGCTCTACCCTTAAAATTTTTTCCTACCT
TAGCCAGATTGAGCCTATCTGTAGTAAGCTAACCTGGAAGGCTAAAATTCTGAAAAGGGTGTGTAATCATGCATTTCATTTCCATTGTATCAGTAGATGGTTGAA
GACACGTCAAGTTTGTCCATTGGATAATAGCGAGTGGGAGTTTCAGAAGTACGGTCACTAG

Protein sequence

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MCPWFRPARLRAVPVLHPPRNPSVSRSKSGTPSLFGHGILLSIIVRSVGIISWISVLSVKQTRLAQPARNVLWLGVRFLIPSPYLQPIHRDTICAIIFNAFEDTK
VWSIHISDLITSATRPFFVFFLVNRSTLKIFSYLSQIEPICSKLTWKAKILKRVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

CmUC11G205230 (gene) of Watermelon (USVL531) v1 genome