CuGenDBv2

Gene ID	CmUC11G211100
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Ribulose bisphosphate carboxylase large chain
Genome location	CmU531Chr11:7697848..7701963
RNA-Seq Expression	CmUC11G211100
Synteny	CmUC11G211100
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0009853 - photorespiration (biological process) GO:0019253 - reductive pentose-phosphate cycle (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0019843 - rRNA binding (molecular function) GO:0000287 - magnesium ion binding (molecular function) GO:0016984 - ribulose-bisphosphate carboxylase activity (molecular function) GO:0004497 - monooxygenase activity (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR036986 - RNA-binding S4 domain superfamily IPR036920 - Ribosomal protein L10e/L16 superfamily IPR036376 - Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily IPR033966 - RuBisCO IPR000114 - Ribosomal protein L16 IPR000685 - Ribulose bisphosphate carboxylase, large subunit, C-terminal IPR001912 - Ribosomal protein S4/S9, N-terminal IPR016180 - Ribosomal protein L10e/L16 IPR020798 - Ribosomal protein L16, conserved site

Homology

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GenBank top hits

e value

%identity

Alignment

AHA37505.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Anemone narcissiflora]

1.6e-17

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Query:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG
        +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP Y G
Subjt:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG

KAD3640515.1 hypothetical protein E3N88_29738 [Mikania micrantha]

1.6e-17

79.69

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Query:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGGAGGPISPYQPQGNS
        +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP   G GG    + P GN+
Subjt:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGGAGGPISPYQPQGNS

OTF84304.1 putative ribulose bisphosphate carboxylase, large subunit [Helianthus annuus]

1.6e-17

79.69

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Query:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGGAGGPISPYQPQGNS
        +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP   G GG    + P GN+
Subjt:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGGAGGPISPYQPQGNS

PLY71284.1 hypothetical protein LSAT_0X38040 [Lactuca sativa]

1.6e-17

48.8

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Query:  TRASLPLVSIW--YSLDSFSRSLQ---AFGVMPPDLTKSIGRAGWEGVISGEKN----QSTSAKLISPRPITRSGERFTQFGRNGKIWVRVLADLPITGK
        TR  +  V +W  YS     R++    + G  P       GR G + + +G  +    ++    +I     T SG    QF RNGKIWVRVLADLPITG+
Subjt:  TRASLPLVSIW--YSLDSFSRSLQ---AFGVMPPDLTKSIGRAGWEGVISGEKN----QSTSAKLISPRPITRSGERFTQFGRNGKIWVRVLADLPITGK

Query:  PTEVRMGRGKGNPTGWIARVSTGQI
        PTEVRMGRGKGNPTGWIARVSTGQI
Subjt:  PTEVRMGRGKGNPTGWIARVSTGQI

QHI41693.1 ribosomal protein L16 [Paraprenanthes diversifolia]

3.5e-17

57.29

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Query:  GVMPPDLTKSIGRAGWEGVISGEKN----QSTSAKLISPRPITRSGERFTQFGRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI
        G  P       GR G + + +G  +    ++    +I     T SG    QF RNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI
Subjt:  GVMPPDLTKSIGRAGWEGVISGEKN----QSTSAKLISPRPITRSGERFTQFGRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI

TrEMBL top hits

e value

%identity

Alignment

A0A1Y3BWP5 Ribulose bisphosphate carboxylase large chain

7.7e-18

79.69

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Query:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGGAGGPISPYQPQGNS
        +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP   G GG    + P GN+
Subjt:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGGAGGPISPYQPQGNS

A0A2J6K897 Uncharacterized protein

7.7e-18

48.8

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Query:  TRASLPLVSIW--YSLDSFSRSLQ---AFGVMPPDLTKSIGRAGWEGVISGEKN----QSTSAKLISPRPITRSGERFTQFGRNGKIWVRVLADLPITGK
        TR  +  V +W  YS     R++    + G  P       GR G + + +G  +    ++    +I     T SG    QF RNGKIWVRVLADLPITG+
Subjt:  TRASLPLVSIW--YSLDSFSRSLQ---AFGVMPPDLTKSIGRAGWEGVISGEKN----QSTSAKLISPRPITRSGERFTQFGRNGKIWVRVLADLPITGK

Query:  PTEVRMGRGKGNPTGWIARVSTGQI
        PTEVRMGRGKGNPTGWIARVSTGQI
Subjt:  PTEVRMGRGKGNPTGWIARVSTGQI

A0A5N6MJP1 Ribulose bisphosphate carboxylase large chain

7.7e-18

79.69

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Query:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGGAGGPISPYQPQGNS
        +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP   G GG    + P GN+
Subjt:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGGAGGPISPYQPQGNS

A0A6B9S879 Ribosomal protein L16

1.7e-17

57.29

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Query:  GVMPPDLTKSIGRAGWEGVISGEKN----QSTSAKLISPRPITRSGERFTQFGRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI
        G  P       GR G + + +G  +    ++    +I     T SG    QF RNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI
Subjt:  GVMPPDLTKSIGRAGWEGVISGEKN----QSTSAKLISPRPITRSGERFTQFGRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI

U6BRN5 Ribulose bisphosphate carboxylase large chain (Fragment)

7.7e-18

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Query:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG
        +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP Y G
Subjt:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG

SwissProt top hits

e value

%identity

Alignment

P28378 Ribulose bisphosphate carboxylase large chain (Fragment)

2.3e-19

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Query:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG
        +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP   G
Subjt:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG

P36479 Ribulose bisphosphate carboxylase large chain (Fragment)

2.3e-19

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Query:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG
        +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP   G
Subjt:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG

P93988 Ribulose bisphosphate carboxylase large chain (Fragment)

2.3e-19

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Query:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG
        +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP   G
Subjt:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG

Q37192 Ribulose bisphosphate carboxylase large chain

2.3e-19

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Query:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG
        +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP   G
Subjt:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG

Q9MTE7 Ribulose bisphosphate carboxylase large chain (Fragment)

2.3e-19

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Query:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG
        +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP   G
Subjt:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG

Arabidopsis top hits

e value

%identity

Alignment

AT2G28830.1 PLANT U-BOX 12

1.3e-06

34.48

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Query:  LTKSIGRAGWEGVISGEKNQSTSAKLISPRPITRSGERFTQ-FGRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI
        + K +   G+  + S    Q+     I+ R I       T+  GR   + V + AD P+T +P E RMGRGKG P  W+A V  G+I
Subjt:  LTKSIGRAGWEGVISGEKNQSTSAKLISPRPITRSGERFTQ-FGRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI

ATCG00380.1 chloroplast ribosomal protein S4

8.7e-14

71.93

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Query:  LLDKYLLSGNVNSVERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFQLGMARNV
        L +K  L  +    E QLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF+LGMA  +
Subjt:  LLDKYLLSGNVNSVERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFQLGMARNV

ATCG00490.1 ribulose-bisphosphate carboxylases

1.5e-18

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Query:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG
        +VGKLEG+RE TLGFVDLLRDD++EKDRSRGI+FTQDWVSLPGVLP   G
Subjt:  LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG

ATCG00790.1 ribosomal protein L16

1.4e-08

55.81

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Query:  RNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI
        R GKIWVR+  D P+T +P E RMG GKG+P  W+A V  G+I
Subjt:  RNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI

ATMG00080.1 ribosomal protein L16

4.8e-20

95.65

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Query:  QFGRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI
        QF RNGKIWVRV ADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI
Subjt:  QFGRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI

Sequences

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CDS sequence

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ATGGATTCCTTATTAACACCGTTTCGAACACAACGAGTACATTCCAAAATAACTGTTACTCGGGCATCTTTACCCTTGGTCAGCATTTGGTACTCTCTCGATAGCTTCTC
TCGTTCACTTCAAGCCTTTGGTGTAATGCCCCCCGATCTTACAAAATCGATCGGGCGGGCTGGTTGGGAAGGGGTTATTAGTGGAGAAAAGAATCAATCGACGAGTGCCA
AGCTAATCTCTCCGAGGCCTATAACTCGTTCTGGTGAGCGATTCACGCAATTCGGAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCAGATCTCCCTATTACCGGGAAA
CCTACAGAAGTCAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCGTGTGTCCACGGGACAAATTGATTCTGTATCTTCTGTATATAGTAAGTGGAATAC
TGATAATTCAAGTCCGGGTCATTGCGATTACGGGTTGGGCGATCTAATGCTTGAAGTAAAAATCAATTTGATTCCACCATACATATCAGCCGAGCCATTCCCTTTTATGA
TACTGAGCCGGACAAATATCTGGCGTGAATCTATAAGTCTATCTATCTTGCTTGACAAATACTTGTTGAGCGGAAACGTGAATTCTGTTGAACGACAATTACTTAAATAC
GTTCGTATCGCCGGAAAAGCCAAAGGATCAACGGGTCAAGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATCCTTTTTCAATTGGGTATGGCTAGGAATGTATT
CTATCATAAAAGCTATTTAAGCTTAGCCCGTGGGTATCTCGGGGACTTGCGGATCGAAATGAACTTTACATACATGTTCAGGAAATCCTGTCATTTCTTCTTAGTAGGTA
AACTTGAAGGGGAAAGAGAAATCACTTTAGGCTTTGTTGATTTACTACGTGATGATTTTATTGAAAAAGACCGAAGCCGCGGTATTTATTTCACTCAAGATTGGGTCTCT
TTACCAGGTGTTCTGCCCGACTATGGCGGGGCGGGTGGCCCCATTTCGCCTTACCAACCCCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTG
GGGTGCTAAGATCCAAAGTCGAGAGGCATCTCTCTTTCTCATTCCCCGCTTGACATCTTTTTCTCTCAATGGTGCTCTGCTCATTCAGGATAATTTGAAAAACGGAGATC
CCGATCGCCCTTTGCTACGGCTTTTTCAGGGCAAATAA

mRNA sequence

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Protein sequence

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MDSLLTPFRTQRVHSKITVTRASLPLVSIWYSLDSFSRSLQAFGVMPPDLTKSIGRAGWEGVISGEKNQSTSAKLISPRPITRSGERFTQFGRNGKIWVRVLADLPITGK
PTEVRMGRGKGNPTGWIARVSTGQIDSVSSVYSKWNTDNSSPGHCDYGLGDLMLEVKINLIPPYISAEPFPFMILSRTNIWRESISLSILLDKYLLSGNVNSVERQLLKY
VRIAGKAKGSTGQVLLQLLEMRLDNILFQLGMARNVFYHKSYLSLARGYLGDLRIEMNFTYMFRKSCHFFLVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVS
LPGVLPDYGGAGGPISPYQPQGNSEYRPRSFVQTDFWGAKIQSREASLFLIPRLTSFSLNGALLIQDNLKNGDPDRPLLRLFQGK

CmUC11G211100 (gene) of Watermelon (USVL531) v1 genome