CuGenDBv2

Gene ID	CmUC11G211360
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	CmU531Chr11:7769552..7772077
RNA-Seq Expression	CmUC11G211360
Synteny	CmUC11G211360
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	IPR015712 - DNA-directed RNA polymerase, subunit 2

Homology

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GenBank top hits

e value

%identity

Alignment

AHM89856.1 RNA polymerase beta subunit [Lagenaria siceraria]

2.4e-18

89.47

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDT ESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT

QJR52948.1 RNA polymerase beta subunit [Herpetospermum pedunculosum]

2.4e-18

89.47

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDT ESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT

YP_009236272.1 RNA polymerase beta subunit [Gynostemma pentaphyllum]

2.4e-18

89.47

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDT ESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT

YP_009752827.1 RNA polymerase subunit beta [Baijiania yunnanensis]

2.4e-18

89.47

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDT ESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT

YP_009753697.1 RNA polymerase subunit beta [Trichosanthes nervifolia]

2.4e-18

89.47

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDT ESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT

TrEMBL top hits

e value

%identity

Alignment

A0A109WXU0 DNA-directed RNA polymerase subunit beta

1.2e-18

89.47

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDT ESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT

A0A1S4ETZ9 DNA-directed RNA polymerase subunit beta

1.2e-18

89.47

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDT ESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT

A0A1X9Q1B9 DNA-directed RNA polymerase subunit beta

1.2e-18

89.47

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDT ESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT

A0A218KG28 DNA-directed RNA polymerase subunit beta

1.2e-18

89.47

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDT ESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT

A0A249RZI0 DNA-directed RNA polymerase subunit beta

1.2e-18

89.47

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDT ESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT

SwissProt top hits

e value

%identity

Alignment

A4QK10 DNA-directed RNA polymerase subunit beta

1.2e-20

87.72

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPED  ESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT

A4QK97 DNA-directed RNA polymerase subunit beta

1.2e-20

87.72

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPED  ESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT

A6MM28 DNA-directed RNA polymerase subunit beta

1.2e-20

87.72

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIP PEDT ESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT

P50546 DNA-directed RNA polymerase subunit beta

1.2e-20

87.72

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPED  ESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT

Q4VZP1 DNA-directed RNA polymerase subunit beta

3.2e-21

89.47

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPEDT ESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT

Arabidopsis top hits

e value

%identity

Alignment

ATCG00190.1 RNA polymerase subunit beta

8.5e-22

87.72

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Query:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT
        + +LTYKSDHIRARQEVLGTTIIGGTIPKPED  ESFRLLVRELRSLALELNHFL +
Subjt:  EPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVRELRSLALELNHFLAT

Sequences

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CDS sequence

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ATGACTGCATCAAAGATGCACTTGCTAGTACTAGTACATCTGAGAATTCTTAATTGGCTAGTTGTAAATAGACCCAGACTGTGGAACAAAGGATTATCCCGGACCTACAC
CGAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGTATCAGCAAGAGCCCGTGCTTACTTATAAAT
CTGATCATATTAGAGCTCGGCAAGAAGTACTTGGTACTACAATCATTGGAGGAACAATACCGAAACCTGAGGATACTCTAGAATCTTTTCGATTGCTCGTTCGAGAATTA
CGATCTTTGGCTTTGGAACTGAATCATTTCCTTGCCACGCTACTTTTTCAATCAAGAAAGTCCTCGGGATGCAATCGGCCATGGAAATTTTGA

mRNA sequence

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Protein sequence

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MTASKMHLLVLVHLRILNWLVVNRPRLWNKGLSRTYTEGPLISSFSELGLWKKEPRRKYQQQQYQQEPVLTYKSDHIRARQEVLGTTIIGGTIPKPEDTLESFRLLVREL
RSLALELNHFLATLLFQSRKSSGCNRPWKF

CmUC11G211360 (gene) of Watermelon (USVL531) v1 genome