CuGenDBv2

Gene ID	CmUC11G211370
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	50S ribosomal protein L23, chloroplastic
Genome location	CmU531Chr11:7771325..7772144
RNA-Seq Expression	CmUC11G211370
Synteny	CmUC11G211370
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0009536 - plastid (cellular component) GO:0015934 - large ribosomal subunit (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	IPR012678 - Ribosomal protein L23/L15e core domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF3946242.1 hypothetical protein CMV_027466 [Castanea mollissima]

1.5e-23

90.32

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Query:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQVKSNPRNNLIYGQHRCGKGR
        V VIAMNSHRL GKGRRMGPI+GHTMHYRRMIITLQPAVD+QVKSNPRNNLIYGQH C KGR
Subjt:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQVKSNPRNNLIYGQHRCGKGR

KAG4119256.1 hypothetical protein ERO13_D11G067360v2 [Gossypium hirsutum]

3.5e-20

77.14

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Query:  MNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP-------------AVDNQVKSNPRNNLIYGQHRCGKGR
        MNSHRL GKGRRMGPI+GHTMHYRRMIITLQP             AVD+QVKSNPRNNLIYGQHRCGKGR
Subjt:  MNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP-------------AVDNQVKSNPRNNLIYGQHRCGKGR

KAG5606025.1 hypothetical protein H5410_027517 [Solanum commersonii]

1.2e-20

87.1

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Query:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQVKSNPRNNLIYGQHRCGKGR
        V VIAMNSHRL GK RRMGPI+GHTMHYRRMIITLQP  D+QVKSNPRNNLIYGQ RCGKGR
Subjt:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQVKSNPRNNLIYGQHRCGKGR

TYI09250.1 hypothetical protein ES332_A09G058600v1 [Gossypium tomentosum]

5.7e-23

94.74

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Query:  MNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQVKSNPRNNLIYGQHRCGKGR
        MNSHRL GKGRRMGPI+GHTMHYRRMIITLQPAVD+QVKSNPRNNLIYGQHRCGKGR
Subjt:  MNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQVKSNPRNNLIYGQHRCGKGR

TYI09266.1 hypothetical protein ES332_A09G060200v1 [Gossypium tomentosum]

5.7e-23

94.74

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Query:  MNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQVKSNPRNNLIYGQHRCGKGR
        MNSHRL GKGRRMGPI+GHTMHYRRMIITLQPAVD+QVKSNPRNNLIYGQHRCGKGR
Subjt:  MNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQVKSNPRNNLIYGQHRCGKGR

TrEMBL top hits

e value

%identity

Alignment

A0A2G9G6U0 Mitochondrial/chloroplast ribosomal protein L2

2.0e-18

69.33

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Query:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITL-------------QPAVDNQVKSNPRNNLIYGQHRCGKGR
        V VIAMNSHRL  KGRRMGPI+GHTMHYRRMIIT+                VD+QVKSNPRNNLIYGQH CGKGR
Subjt:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITL-------------QPAVDNQVKSNPRNNLIYGQHRCGKGR

A0A411K5D6 Ribosomal protein L2

7.0e-19

58.76

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Query:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP-----------------------------------AVDNQVKSNPRNNLIYGQHRCGKGR
        V VIAMNSHRL GKGRRMGPI+GHTMHYRRMIITLQP                                   AVD+QVKSNPRNNLIYGQ RCGKGR
Subjt:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP-----------------------------------AVDNQVKSNPRNNLIYGQHRCGKGR

A0A5D2D6S0 50S ribosomal protein L2, chloroplastic

1.8e-19

74.29

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Query:  MNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP-------------AVDNQVKSNPRNNLIYGQHRCGKGR
        MNSHRL GKG R+GPI+GHTMHYRRMIITLQP             AVD+QVKSNPRNNLIYGQHRCGKGR
Subjt:  MNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP-------------AVDNQVKSNPRNNLIYGQHRCGKGR

A0A5D2P0J4 50S ribosomal protein L2, chloroplastic

2.8e-23

94.74

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Query:  MNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQVKSNPRNNLIYGQHRCGKGR
        MNSHRL GKGRRMGPI+GHTMHYRRMIITLQPAVD+QVKSNPRNNLIYGQHRCGKGR
Subjt:  MNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQVKSNPRNNLIYGQHRCGKGR

A0A5D2P3Y3 50S ribosomal protein L2, chloroplastic

2.8e-23

94.74

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Query:  MNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQVKSNPRNNLIYGQHRCGKGR
        MNSHRL GKGRRMGPI+GHTMHYRRMIITLQPAVD+QVKSNPRNNLIYGQHRCGKGR
Subjt:  MNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQVKSNPRNNLIYGQHRCGKGR

SwissProt top hits

e value

%identity

Alignment

A0A378 50S ribosomal protein L23, chloroplastic

2.8e-12

91.89

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Query:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP
        V VIAMNSHRL GKGRRMGPI+GHTMHYRRMIITLQP
Subjt:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP

A0ZZ77 50S ribosomal protein L23, chloroplastic

2.8e-12

91.89

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Query:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP
        V VIAMNSHRL GKGRRMGPI+GHTMHYRRMIITLQP
Subjt:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP

Q06GJ6 50S ribosomal protein L23, chloroplastic

9.5e-13

94.59

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Query:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP
        V VIAMNSHRL GKGRRMGPIIGHTMHYRRMIITLQP
Subjt:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP

Q06GT3 50S ribosomal protein L23, chloroplastic

2.8e-12

91.89

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Query:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP
        V VIAMNSHRL GKGRRMGPI+GHTMHYRRMIITLQP
Subjt:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP

Q4VZK6 50S ribosomal protein L23, chloroplastic

2.8e-12

91.89

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Query:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP
        V VIAMNSHRL GKGRRMGPI+GHTMHYRRMIITLQP
Subjt:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP

Arabidopsis top hits

e value

%identity

Alignment

ATCG00830.1 ribosomal protein L2

1.0e-06

79.31

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Query:  TLQPAVDNQVKSNPRNNLIYGQHRCGKGR
        T   AVD+QVKSNPRNNLI GQH CGKGR
Subjt:  TLQPAVDNQVKSNPRNNLIYGQHRCGKGR

ATCG00840.1 ribosomal protein L23.1

3.7e-12

86.49

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Query:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP
        V VIAMNSHRL GK +RMGPI+GHTMHYRRMIITLQP
Subjt:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP

ATCG01300.1 ribosomal protein L23

3.7e-12

86.49

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Query:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP
        V VIAMNSHRL GK +RMGPI+GHTMHYRRMIITLQP
Subjt:  VSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQP

ATCG01310.1 ribosomal protein L2

1.0e-06

79.31

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Query:  TLQPAVDNQVKSNPRNNLIYGQHRCGKGR
        T   AVD+QVKSNPRNNLI GQH CGKGR
Subjt:  TLQPAVDNQVKSNPRNNLIYGQHRCGKGR

Sequences

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CDS sequence

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ATGTGGGCCTTATTTCTAATTGAGAAGGGCTTCAATAAAAAGAAGATCGTGGGATCAAAGTGGACGTTCAAAATTTCCATGGCCGATTGCATCCCGAGGACTTTCTTGAT
TGAAAAAGTAGCGTGGCAAGGAAATGATTCAGTTCCAAAGCCAAAGATCGTAATTCTCGAACGAGCAATCGAAAAGATTCTAGAGTATCCTCAGGTTTCGGTAATAGCTA
TGAATAGTCATCGACTCTTGGGAAAGGGTAGAAGAATGGGACCTATTATAGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGCCGTAGACAATCAA
GTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGAGAGGGGGTACATGTCAAGTATCCGCTTGGGATCATGTCTTCTTAG

mRNA sequence

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Protein sequence

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MWALFLIEKGFNKKKIVGSKWTFKISMADCIPRTFLIEKVAWQGNDSVPKPKIVILERAIEKILEYPQVSVIAMNSHRLLGKGRRMGPIIGHTMHYRRMIITLQPAVDNQ
VKSNPRNNLIYGQHRCGKGREGVHVKYPLGIMSS

CmUC11G211370 (gene) of Watermelon (USVL531) v1 genome