; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmUC11G215510 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC11G215510
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Descriptionmediator of RNA polymerase II transcription subunit 22b-like
Genome locationCmU531Chr11:23184455..23187782
RNA-Seq ExpressionCmUC11G215510
SyntenyCmUC11G215510
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0048193 - Golgi vesicle transport (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016592 - mediator complex (cellular component)
GO:0030008 - TRAPP complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR009332 - Mediator of RNA polymerase II transcription subunit 22


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029838.1 Mediator of RNA polymerase II transcription subunit 22b [Cucurbita argyrosperma subsp. argyrosperma]1.2e-6896.67Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT
        VEQRIVEFNQQA+QTDRILS+IGEEAA  LKELESHYYSSTQRTSQNSLT
Subjt:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT

XP_004145443.1 mediator of RNA polymerase II transcription subunit 22b [Cucumis sativus]1.4e-6998Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT
        VEQRIVEFNQQAQQTDR+LSRIGEEAAA+LKELESHYYSSTQRT QNSLT
Subjt:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT

XP_008459037.1 PREDICTED: mediator of RNA polymerase II transcription subunit 22a-like isoform X1 [Cucumis melo]9.3e-6996.67Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT
        VEQRIVEFNQQAQQT+R+LSRIGEEAAA+LKELESHYYSSTQRT QN+LT
Subjt:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT

XP_008459039.1 PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like isoform X2 [Cucumis melo]9.3e-6996.67Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT
        VEQRIVEFNQQAQQT+R+LSRIGEEAAA+LKELESHYYSSTQRT QN+LT
Subjt:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT

XP_038891249.1 mediator of RNA polymerase II transcription subunit 22b-like [Benincasa hispida]1.2e-6897.33Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGG GPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT
        VEQRIVEFNQQAQQTDR+LS IGEEAAASLKELESHYYSSTQRTSQN+LT
Subjt:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT

TrEMBL top hitse value%identityAlignment
A0A0A0M174 Uncharacterized protein7.0e-7098Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT
        VEQRIVEFNQQAQQTDR+LSRIGEEAAA+LKELESHYYSSTQRT QNSLT
Subjt:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT

A0A1S3C993 mediator of RNA polymerase II transcription subunit 22b-like isoform X24.5e-6996.67Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT
        VEQRIVEFNQQAQQT+R+LSRIGEEAAA+LKELESHYYSSTQRT QN+LT
Subjt:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT

A0A1S3CAG5 mediator of RNA polymerase II transcription subunit 22a-like isoform X14.5e-6996.67Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT
        VEQRIVEFNQQAQQT+R+LSRIGEEAAA+LKELESHYYSSTQRT QN+LT
Subjt:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT

A0A5A7TMC4 Mediator of RNA polymerase II transcription subunit 22a-like isoform X14.5e-6996.67Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT
        VEQRIVEFNQQAQQT+R+LSRIGEEAAA+LKELESHYYSSTQRT QN+LT
Subjt:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT

A0A6J1EN95 mediator of RNA polymerase II transcription subunit 22b-like3.8e-6895.33Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT
        VEQRIVEFNQQA+QTDRI+S+IGEEAA  LKELESHYYSSTQRTSQN LT
Subjt:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT

SwissProt top hitse value%identityAlignment
A0JPN6 Mediator of RNA polymerase II transcription subunit 221.4e-1435.77Show/hide
Query:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR
        A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M +RAA +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR
Subjt:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR

Query:  IVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSST
          +     ++ DR L  + +E +  L ELE  YYSS+
Subjt:  IVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSST

Q54XB0 Putative mediator of RNA polymerase II transcription subunit 226.2e-1530.77Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MN G G  + P         + Q+   +++++ I  +++N+ +++ +S+VND P++N+ E + ME R + M+ A + LLK++ ELKQ  I + F+++ + 
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQR
        V  + + F+++ ++T++ +  I EE + SLKELE  YY+S+ +
Subjt:  VEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQR

Q62276 Mediator of RNA polymerase II transcription subunit 221.4e-1435.77Show/hide
Query:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR
        A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M +RAA +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR
Subjt:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR

Query:  IVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSST
          +     ++ DR L  + +E +  L ELE  YYSS+
Subjt:  IVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSST

Q8LCH5 Mediator of RNA polymerase II transcription subunit 22b3.6e-5580Show/hide
Query:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
        G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++MMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
Subjt:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ

Query:  RIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQR
        RI EF+Q+A++T+R+L+RI ++A+A+LKELESHYYSS QR
Subjt:  RIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQR

Q9SA42 Mediator of RNA polymerase II transcription subunit 22a2.3e-5475.51Show/hide
Query:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN
        MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++NSQE++MMEMRA+R+VQAADSLLKLVSELKQTAIFSGFASLN
Subjt:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN

Query:  DHVEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTS
        DHVEQRI EF+Q+A++T+R+L+RI ++A+ASLKELESHYYSS QR++
Subjt:  DHVEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTS

Arabidopsis top hitse value%identityAlignment
AT1G07950.1 Surfeit locus protein 5 subunit 22 of Mediator complex2.5e-5680Show/hide
Query:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
        G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++MMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
Subjt:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ

Query:  RIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQR
        RI EF+Q+A++T+R+L+RI ++A+A+LKELESHYYSS QR
Subjt:  RIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQR

AT1G16430.1 Surfeit locus protein 5 subunit 22 of Mediator complex1.6e-5575.51Show/hide
Query:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN
        MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++NSQE++MMEMRA+R+VQAADSLLKLVSELKQTAIFSGFASLN
Subjt:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLN

Query:  DHVEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTS
        DHVEQRI EF+Q+A++T+R+L+RI ++A+ASLKELESHYYSS QR++
Subjt:  DHVEQRIVEFNQQAQQTDRILSRIGEEAAASLKELESHYYSSTQRTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAAGGCATTGGTGGTGGAACTGGCCCCACTGCAGCGGCTGCGGCAGCGGCAGCTCAGAAACAGAAACTGCTTCTCCAGAGAGTGGAAACCGATATAGCCAACAT
TGTCGACAATTTCACTCACCTTGTCAACGTCTCTAGGGTGAACGATCCACCTGTTAGAAATTCACAGGAATCTTTCATGATGGAAATGCGTGCAGCGAGAATGGTTCAGG
CAGCTGATTCTCTGCTGAAGTTGGTTTCAGAACTTAAGCAGACAGCAATCTTTTCCGGCTTTGCTTCACTAAACGATCATGTGGAGCAAAGAATTGTGGAATTCAATCAG
CAGGCACAGCAGACTGACCGTATCTTATCTAGAATTGGTGAAGAAGCTGCTGCCAGCCTGAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGGACTAGTCAGAA
CAGCCTGACATGA
mRNA sequenceShow/hide mRNA sequence
GTCTAGGGTTGCATCTATCTCGGTGCTGCTTCCTTGTAACGCCGGCAACGCCCATACGACGTCGTTTCTAGCAGAGATTTTCTTCCCTTTTGACGAGGTTTGGTAAAGAC
CCACTCTCATTCAATCTCACATTTTATGGCTCCAAATATGTAGGATTAAGCGTTTTCGGACACTAACAGCAAGGATCCGAGTCGTTTTGGGTTCGTGGTAGTTTTGAAAC
TGTTCACACCGAGGGTCCAAGTCGATTTTGAGCTGACTCAATTCCCATTCTATTATTATGAACAAAGGCATTGGTGGTGGAACTGGCCCCACTGCAGCGGCTGCGGCAGC
GGCAGCTCAGAAACAGAAACTGCTTCTCCAGAGAGTGGAAACCGATATAGCCAACATTGTCGACAATTTCACTCACCTTGTCAACGTCTCTAGGGTGAACGATCCACCTG
TTAGAAATTCACAGGAATCTTTCATGATGGAAATGCGTGCAGCGAGAATGGTTCAGGCAGCTGATTCTCTGCTGAAGTTGGTTTCAGAACTTAAGCAGACAGCAATCTTT
TCCGGCTTTGCTTCACTAAACGATCATGTGGAGCAAAGAATTGTGGAATTCAATCAGCAGGCACAGCAGACTGACCGTATCTTATCTAGAATTGGTGAAGAAGCTGCTGC
CAGCCTGAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGGACTAGTCAGAACAGCCTGACATGATTTGTAAGTTGTAAATTAAGTAAATTAATGATGTGATATT
GTTGTCTTCTAAACTCAATTGCTTGCTAACCTGTATAATTAAGCGTAATCAAACTCTTCTAGCCTGAGTTTGTAGCATTTTTCTTTGGCTTTTATTGTGATGCCAAGCTA
GATAATGAGTGAATGATTGTATAATTTAAGAATCAGCCTTCTTTTTCTTTTAAGGAGAATTTTAAGCAATGTGTATCGCAGTTAGGCC
Protein sequenceShow/hide protein sequence
MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQ
QAQQTDRILSRIGEEAAASLKELESHYYSSTQRTSQNSLT