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CmUC11G215540 (gene) of Watermelon (USVL531) v1 genome

Gene IDCmUC11G215540
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionTBC1 domain family member 13-like
Genome locationCmU531Chr11:23215367..23223063
RNA-Seq ExpressionCmUC11G215540
SyntenyCmUC11G215540
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0090630 - activation of GTPase activity (biological process)
GO:0005096 - GTPase activator activity (molecular function)
InterPro domainsIPR035969 - Rab-GTPase-TBC domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA2620153.1 unnamed protein product [Spirodela intermedia]2.8e-0971.7Show/hide
Query:  VQGK-AAKCGLSHTGGLLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        VQG+     G S       QDSEIIEQIDRDVKRTHPDMHFFSGDSS AKSNQ
Subjt:  VQGK-AAKCGLSHTGGLLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

KAG6789871.1 hypothetical protein POTOM_006002 [Populus tomentosa]2.8e-0979.55Show/hide
Query:  GLSHTGGLLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        G S       QDSEIIEQIDRDVKRTHPD+HFFSGDSSLAKSNQ
Subjt:  GLSHTGGLLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

KAG6793245.1 hypothetical protein POTOM_002442 [Populus tomentosa]2.8e-0979.55Show/hide
Query:  GLSHTGGLLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        G S       QDSEIIEQIDRDVKRTHPD+HFFSGDSSLAKSNQ
Subjt:  GLSHTGGLLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

RQO85599.1 hypothetical protein POPTR_001G316700 [Populus trichocarpa]2.8e-0979.55Show/hide
Query:  GLSHTGGLLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        G S       QDSEIIEQIDRDVKRTHPD+HFFSGDSSLAKSNQ
Subjt:  GLSHTGGLLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

XP_011045638.1 PREDICTED: TBC1 domain family member 13-like [Populus euphratica]2.8e-0979.55Show/hide
Query:  GLSHTGGLLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        G S       QDSEIIEQIDRDVKRTHPD+HFFSGDSSLAKSNQ
Subjt:  GLSHTGGLLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

TrEMBL top hitse value%identityAlignment
A0A3N7EF82 Rab-GAP TBC domain-containing protein1.3e-0979.55Show/hide
Query:  GLSHTGGLLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        G S       QDSEIIEQIDRDVKRTHPD+HFFSGDSSLAKSNQ
Subjt:  GLSHTGGLLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

A0A4U5QCS1 TBC1 domain family member 13-like1.3e-0979.55Show/hide
Query:  GLSHTGGLLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        G S       QDSEIIEQIDRDVKRTHPD+HFFSGDSSLAKSNQ
Subjt:  GLSHTGGLLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

A0A5A7TED9 TBC1 domain family member 131.7e-09100Show/hide
Query:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
Subjt:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

A0A6J1KEH5 TBC1 domain family member 13-like1.7e-09100Show/hide
Query:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
Subjt:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

A0A7I8IQ37 Hypothetical protein1.3e-0971.7Show/hide
Query:  VQGK-AAKCGLSHTGGLLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        VQG+     G S       QDSEIIEQIDRDVKRTHPDMHFFSGDSS AKSNQ
Subjt:  VQGK-AAKCGLSHTGGLLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G04830.1 Ypt/Rab-GAP domain of gyp1p superfamily protein2.3e-0979.41Show/hide
Query:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        QD+E IEQIDRDVKRTHPD+ FFSG+SS A+SNQ
Subjt:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

AT1G04830.2 Ypt/Rab-GAP domain of gyp1p superfamily protein2.3e-0979.41Show/hide
Query:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        QD+E IEQIDRDVKRTHPD+ FFSG+SS A+SNQ
Subjt:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

AT4G13730.1 Ypt/Rab-GAP domain of gyp1p superfamily protein3.5e-1076.47Show/hide
Query:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        +D+E++EQI+RDV RTHPDMHFFSGDS++AKSNQ
Subjt:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

AT4G13730.2 Ypt/Rab-GAP domain of gyp1p superfamily protein3.5e-1076.47Show/hide
Query:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        +D+E++EQI+RDV RTHPDMHFFSGDS++AKSNQ
Subjt:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ

AT4G13730.3 Ypt/Rab-GAP domain of gyp1p superfamily protein3.5e-1076.47Show/hide
Query:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ
        +D+E++EQI+RDV RTHPDMHFFSGDS++AKSNQ
Subjt:  QDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATGGCGCCGCTGCGCTGGTGTGCAAGGCAAGGCTGCTAAGTGTGGTTTGTCGCACACTGGCGGACTACTCGTTCAAGACTCTGAGATTATAGAACAAATTGACCG
AGATGTGAAGCGTACTCATCCAGATATGCACTTCTTCTCTGGGGACTCATCACTTGCAAAATCTAATCAGGGACAGGTGTTTGCTGTGACACAGCAGGAGGCCGAGGCGA
CATCGGATGTAGTCACGAGAATATGGCGGGTTGCCCAAGTACCTTCTACGAGTCCTTCAGTAAACTTACCAAAAATAACAAATTTTCATTTAAGGAAAACTGGCGCCGCG
GCGCTGATCCAGAGCGCCGTAGTACTAGGGTTGTGTCCAAAATTGTTGCTCTCGGGTTTTAGTGCCGCGGCAGCACCGTCCAAGTGCTGTGACGCTGTGATGTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGATGGCGCCGCTGCGCTGGTGTGCAAGGCAAGGCTGCTAAGTGTGGTTTGTCGCACACTGGCGGACTACTCGTTCAAGACTCTGAGATTATAGAACAAATTGACCG
AGATGTGAAGCGTACTCATCCAGATATGCACTTCTTCTCTGGGGACTCATCACTTGCAAAATCTAATCAGGGACAGGTGTTTGCTGTGACACAGCAGGAGGCCGAGGCGA
CATCGGATGTAGTCACGAGAATATGGCGGGTTGCCCAAGTACCTTCTACGAGTCCTTCAGTAAACTTACCAAAAATAACAAATTTTCATTTAAGGAAAACTGGCGCCGCG
GCGCTGATCCAGAGCGCCGTAGTACTAGGGTTGTGTCCAAAATTGTTGCTCTCGGGTTTTAGTGCCGCGGCAGCACCGTCCAAGTGCTGTGACGCTGTGATGTGTTAA
Protein sequenceShow/hide protein sequence
MRWRRCAGVQGKAAKCGLSHTGGLLVQDSEIIEQIDRDVKRTHPDMHFFSGDSSLAKSNQGQVFAVTQQEAEATSDVVTRIWRVAQVPSTSPSVNLPKITNFHLRKTGAA
ALIQSAVVLGLCPKLLLSGFSAAAAPSKCCDAVMC