; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh00G001030 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh00G001030
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionpolygalacturonase-like
Genome locationCma_Chr00:4730505..4731330
RNA-Seq ExpressionCmaCh00G001030
SyntenyCmaCh00G001030
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0015698 - inorganic anion transport (biological process)
GO:0098656 - anion transmembrane transport (biological process)
GO:0005741 - mitochondrial outer membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0004650 - polygalacturonase activity (molecular function)
GO:0008308 - voltage-gated anion channel activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022932973.1 polygalacturonase-like [Cucurbita moschata]3.0e-5487.2Show/hide
Query:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCS
        MEAEE+GVHNVTVKSSTFT T+NG RIKSWGRPSNG AT V+FQHIIMDNVKNPIIIDQNYCPHLKDCP       VSEVTYEDIKGTSATEIAINFDCS
Subjt:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCS

Query:  PTNHCTGLSLIDIKLTYENHIAKAS
        PTNHCTGLSL DI LTYENHIAKAS
Subjt:  PTNHCTGLSLIDIKLTYENHIAKAS

XP_022963687.1 polygalacturonase-like [Cucurbita moschata]7.1e-5688Show/hide
Query:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCS
        +EAEEDGVHNVTVKSSTFT T+NG RIKSWGRPSNGFATNVHFQHI MDNVKNPIIIDQNYCPHLKDCP       VSEVTYEDIKGTSATEIAI FDCS
Subjt:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCS

Query:  PTNHCTGLSLIDIKLTYENHIAKAS
        PTNHCTGL+LIDI LTYENHIAKAS
Subjt:  PTNHCTGLSLIDIKLTYENHIAKAS

XP_022974795.1 polygalacturonase-like [Cucurbita maxima]1.2e-5891.2Show/hide
Query:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCS
        M+AEEDGVHN+TVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP       VSEVTYEDIKGTSAT+IAINFDCS
Subjt:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCS

Query:  PTNHCTGLSLIDIKLTYENHIAKAS
        PTNHCTGL LIDIKLTYENHIAKAS
Subjt:  PTNHCTGLSLIDIKLTYENHIAKAS

XP_023521278.1 polygalacturonase-like [Cucurbita pepo subsp. pepo]2.3e-5488.33Show/hide
Query:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP--VSEVTYEDIKGTSATEIAINFDCSPTNHC
        +E EEDGVHN+TVKSSTFT T+NG RIKSWGRPSNGFATNV+FQHIIMDNVKNPIIIDQNYCP  K+CP  VSEVTY+DIKGTSATEIAINFDCSPTNHC
Subjt:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP--VSEVTYEDIKGTSATEIAINFDCSPTNHC

Query:  TGLSLIDIKLTYENHIAKAS
        TGLSLIDI LTYENHIAKAS
Subjt:  TGLSLIDIKLTYENHIAKAS

XP_023522679.1 polygalacturonase-like [Cucurbita pepo subsp. pepo]1.1e-5386.4Show/hide
Query:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCS
        ME EEDGVHNVTVKSS FT T+NG RIKSWGRPSNG AT V+FQHIIMDNVKNPIIIDQNYCPHLKDCP       VSEVTYEDIKGTSATEIAINFDCS
Subjt:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCS

Query:  PTNHCTGLSLIDIKLTYENHIAKAS
        PTNHCTGLSL DI LTYENHIAKAS
Subjt:  PTNHCTGLSLIDIKLTYENHIAKAS

TrEMBL top hitse value%identityAlignment
A0A6J1F3B8 polygalacturonase-like1.5e-5487.2Show/hide
Query:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCS
        MEAEE+GVHNVTVKSSTFT T+NG RIKSWGRPSNG AT V+FQHIIMDNVKNPIIIDQNYCPHLKDCP       VSEVTYEDIKGTSATEIAINFDCS
Subjt:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCS

Query:  PTNHCTGLSLIDIKLTYENHIAKAS
        PTNHCTGLSL DI LTYENHIAKAS
Subjt:  PTNHCTGLSLIDIKLTYENHIAKAS

A0A6J1HFX3 polygalacturonase-like3.5e-5688Show/hide
Query:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCS
        +EAEEDGVHNVTVKSSTFT T+NG RIKSWGRPSNGFATNVHFQHI MDNVKNPIIIDQNYCPHLKDCP       VSEVTYEDIKGTSATEIAI FDCS
Subjt:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCS

Query:  PTNHCTGLSLIDIKLTYENHIAKAS
        PTNHCTGL+LIDI LTYENHIAKAS
Subjt:  PTNHCTGLSLIDIKLTYENHIAKAS

A0A6J1I843 polygalacturonase-like2.8e-5080.8Show/hide
Query:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCS
        ++AEEDGVHNVT+  STFT T+NG RIKSWGRPS GFAT V+FQHIIMDNVKNPIIIDQNYCPH  DCP       VSEVTYEDIKGTSATEIAINFDCS
Subjt:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCS

Query:  PTNHCTGLSLIDIKLTYENHIAKAS
        P NHCTGLS+ DI LTYENHIAKAS
Subjt:  PTNHCTGLSLIDIKLTYENHIAKAS

A0A6J1IEV2 polygalacturonase-like5.7e-5991.2Show/hide
Query:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCS
        M+AEEDGVHN+TVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP       VSEVTYEDIKGTSAT+IAINFDCS
Subjt:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCS

Query:  PTNHCTGLSLIDIKLTYENHIAKAS
        PTNHCTGL LIDIKLTYENHIAKAS
Subjt:  PTNHCTGLSLIDIKLTYENHIAKAS

A0A6J1IF00 polygalacturonase-like2.8e-5080.8Show/hide
Query:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCS
        ++AEEDGVHNVT+  STFT T+NG RIKSWGRPS GFAT V+FQHIIMDNVKNPIIIDQNYCPH  DCP       VSEVTYEDIKGTSATEIAINFDCS
Subjt:  MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCS

Query:  PTNHCTGLSLIDIKLTYENHIAKAS
        P NHCTGLS+ DI LTYENHIAKAS
Subjt:  PTNHCTGLSLIDIKLTYENHIAKAS

SwissProt top hitse value%identityAlignment
O22818 Probable polygalacturonase At2g438601.9e-2754.1Show/hide
Query:  EEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTN
        EE GV NVTV +  F  T NG RIK+WG+ SN FA N+ FQHI M  VKNPIIIDQ+YC H K CP       VS V YEDI GTS TE+A+  DCS   
Subjt:  EEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTN

Query:  HCTGLSLIDIKLTYENHIAKAS
         CTG+ + D+ L   +  A+AS
Subjt:  HCTGLSLIDIKLTYENHIAKAS

P05117 Polygalacturonase-21.6e-1844.64Show/hide
Query:  VHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDC-------PVSEVTYEDIKGTSATEIAINFDCSPTNHCTG
        V NVTV  +      NG RIK+W +  +G A+N+ F ++ M +VK PIIIDQNYC  ++ C        V  V YE+IKGTSAT++AI FDCS    C G
Subjt:  VHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDC-------PVSEVTYEDIKGTSATEIAINFDCSPTNHCTG

Query:  LSLIDIKLTYEN
        + + +I L  E+
Subjt:  LSLIDIKLTYEN

P35336 Polygalacturonase1.2e-1844.07Show/hide
Query:  EDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDC-------PVSEVTYEDIKGTSATEIAINFDCSPTNH
        E  V +V V  +    T NG RIK+W +  +G A+N+ FQ++ M NV+NPIIIDQNYC   K C        V  V Y++IKGT A+ +AI FDCS    
Subjt:  EDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDC-------PVSEVTYEDIKGTSATEIAINFDCSPTNH

Query:  CTGLSLIDIKLTYENHIA
        C G+ L D+ L  E   A
Subjt:  CTGLSLIDIKLTYENHIA

P48979 Polygalacturonase2.6e-3760.48Show/hide
Query:  EAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSP
        E EE GV NVTVK+ TF+ T+NG RIKSWGRPS GFA N+ FQH  M NV+NPI+IDQ+YCP  K CP       +S+VTYEDI GTSATE+A+ FDCSP
Subjt:  EAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSP

Query:  TNHCTGLSLIDIKLTYENHIAKAS
         + C  + L D+KLTY+N  A++S
Subjt:  TNHCTGLSLIDIKLTYENHIAKAS

Q9SFB7 Polygalacturonase QRT24.2e-1944.17Show/hide
Query:  VHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTNHCTG
        V NV V  +T   T NG RIK+W +  +G A N+ FQ IIM NV NPIII+Q+YC  ++ CP       VS V Y++I+GTS+  IA+ F CS    C G
Subjt:  VHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPTNHCTG

Query:  LSLIDIKLT--YENHIAKAS
        +S+ ++KL    +  ++KAS
Subjt:  LSLIDIKLT--YENHIAKAS

Arabidopsis top hitse value%identityAlignment
AT1G05650.1 Pectin lyase-like superfamily protein1.1e-3358.62Show/hide
Query:  EAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSP
        +  EDGV NVTV SS FT ++NG RIKSW RPS GF  NV FQ++IM NV+NPIIIDQNYCP  + CP       +++VTY++I+GTSAT+ A+   CS 
Subjt:  EAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSP

Query:  TNHCTGLSLIDIKLTY
        +N CTG++L DIKLTY
Subjt:  TNHCTGLSLIDIKLTY

AT1G05660.1 Pectin lyase-like superfamily protein1.4e-3358.62Show/hide
Query:  EAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSP
        E +EDGV NVTV SS FT ++NG RIKSW RPSNGF   V FQ ++M NV+NPIIIDQNYCP  + CP       +S+VTY++I+GTSAT+ A+   CS 
Subjt:  EAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSP

Query:  TNHCTGLSLIDIKLTY
        ++ CTG++L DIKLTY
Subjt:  TNHCTGLSLIDIKLTY

AT2G43870.1 Pectin lyase-like superfamily protein5.7e-3556.45Show/hide
Query:  EAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSP
        ++ E GV NVTVK+ TFT T NG RIKSW RPS+GFA N+ FQH +M+NV+NPIIIDQNYCP   DCP       +S+V + DI GTSATE+ +  DCS 
Subjt:  EAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSP

Query:  TNHCTGLSLIDIKLTYENHIAKAS
           CTG+ L D+KLTY+N  A ++
Subjt:  TNHCTGLSLIDIKLTYENHIAKAS

AT2G43880.1 Pectin lyase-like superfamily protein3.9e-3661.74Show/hide
Query:  AEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPT
        A E+GV NVTV SS FT+T+NG RIK+W RPS GF  NV F+++IM+NV+NP+IIDQNYCP+ K CP       +S VT+ +IKGTS T IA+  DCS +
Subjt:  AEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSPT

Query:  NHCTGLSLIDIKLTY
        NHCTGL L DIKLTY
Subjt:  NHCTGLSLIDIKLTY

AT3G59850.1 Pectin lyase-like superfamily protein8.7e-3656.78Show/hide
Query:  EAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSP
        E+ E GV N+TVK++TFT T NG RIKSW RPSNGFA N+ FQH +M+NV+NPI+IDQNYCP  ++CP       +S+V + DI GTSATE+ +  DCS 
Subjt:  EAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCP-------VSEVTYEDIKGTSATEIAINFDCSP

Query:  TNHCTGLSLIDIKLTYEN
           CTG+ + D+KLTY N
Subjt:  TNHCTGLSLIDIKLTYEN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCTGAGGAGGATGGAGTGCATAACGTTACAGTGAAATCATCTACATTCACAAGGACTCGGAATGGAGCAAGGATTAAGTCTTGGGGAAGACCAAGCAATGGATT
CGCTACAAACGTTCATTTTCAACACATTATTATGGATAATGTGAAAAACCCAATCATAATTGATCAAAATTATTGTCCACATCTCAAAGACTGTCCTGTTAGCGAAGTGA
CATACGAAGATATCAAGGGAACTTCAGCCACTGAAATAGCAATCAATTTTGATTGTAGTCCAACAAATCATTGCACTGGATTAAGCTTGATAGACATAAAGCTAACTTAC
GAGAATCACATCGCTAAAGCTTCA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCTGAGGAGGATGGAGTGCATAACGTTACAGTGAAATCATCTACATTCACAAGGACTCGGAATGGAGCAAGGATTAAGTCTTGGGGAAGACCAAGCAATGGATT
CGCTACAAACGTTCATTTTCAACACATTATTATGGATAATGTGAAAAACCCAATCATAATTGATCAAAATTATTGTCCACATCTCAAAGACTGTCCTGTTAGCGAAGTGA
CATACGAAGATATCAAGGGAACTTCAGCCACTGAAATAGCAATCAATTTTGATTGTAGTCCAACAAATCATTGCACTGGATTAAGCTTGATAGACATAAAGCTAACTTAC
GAGAATCACATCGCTAAAGCTTCA
Protein sequenceShow/hide protein sequence
MEAEEDGVHNVTVKSSTFTRTRNGARIKSWGRPSNGFATNVHFQHIIMDNVKNPIIIDQNYCPHLKDCPVSEVTYEDIKGTSATEIAINFDCSPTNHCTGLSLIDIKLTY
ENHIAKAS