CuGenDBv2

Gene ID	CmaCh00G001050
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	30S ribosomal protein S8, chloroplastic
Genome location	Cma_Chr00:4834845..4835106
RNA-Seq Expression	CmaCh00G001050
Synteny	CmaCh00G001050
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR000630 - Ribosomal protein S8 IPR035987 - Ribosomal protein S8 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ALO21939.1 ribosomal protein S8 [Cucurbita cordata]

1.7e-19

96.36

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Query:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN
        MGKDTIANIITSIRNADMNRKEMVRIPSTNI++NIVKILLREGFIENIRKHRESN
Subjt:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN

ALO22566.1 ribosomal protein S8 [Cucurbita pepo subsp. fraterna]

5.7e-20

98.18

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Query:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN
        MGKDTIANIITSIRNADMNRKEMVRIPSTNIT+NIVKILLREGFIENIRKHRESN
Subjt:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN

YP_009431592.1 ribosomal protein S8 [Citrullus amarus]

4.8e-19

94.55

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Query:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN
        MGKDTIANIITSIRNADMNRK MVRIPSTNIT+NIVKILLREGFIEN+RKHRESN
Subjt:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN

YP_009447486.1 ribosomal protein S8 [Cucurbita maxima]

5.7e-20

98.18

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Query:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN
        MGKDTIANIITSIRNADMNRKEMVRIPSTNIT+NIVKILLREGFIENIRKHRESN
Subjt:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN

YP_009752025.1 ribosomal protein S8 [Cionosicys macranthus]

3.7e-19

96.36

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Query:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN
        MGKDTIANIITSIRNADMNRK MVRIPSTNIT+NIVKILLREGFIENIRKHRESN
Subjt:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN

TrEMBL top hits

e value

%identity

Alignment

A0A0S2IDS4 Ribosomal protein S8

2.8e-20

98.18

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Query:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN
        MGKDTIANIITSIRNADMNRKEMVRIPSTNIT+NIVKILLREGFIENIRKHRESN
Subjt:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN

A0A0S2IFL7 Ribosomal protein S8

2.8e-20

98.18

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Query:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN
        MGKDTIANIITSIRNADMNRKEMVRIPSTNIT+NIVKILLREGFIENIRKHRESN
Subjt:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN

A0A0S2IG11 Ribosomal protein S8

2.8e-20

98.18

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Query:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN
        MGKDTIANIITSIRNADMNRKEMVRIPSTNIT+NIVKILLREGFIENIRKHRESN
Subjt:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN

A0A0S2IGN9 Ribosomal protein S8

2.8e-20

98.18

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Query:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN
        MGKDTIANIITSIRNADMNRKEMVRIPSTNIT+NIVKILLREGFIENIRKHRESN
Subjt:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN

A0A2H4T1Z3 30S ribosomal protein S8, chloroplastic

2.8e-20

98.18

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Query:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN
        MGKDTIANIITSIRNADMNRKEMVRIPSTNIT+NIVKILLREGFIENIRKHRESN
Subjt:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN

SwissProt top hits

e value

%identity

Alignment

A4QJW6 30S ribosomal protein S8, chloroplastic

5.0e-19

87.27

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Query:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN
        MGKDTIA+IITSIRNADMNRK  VRI STNIT++IVKILLREGFIEN+RKHRESN
Subjt:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN

A4QKM7 30S ribosomal protein S8, chloroplastic

5.0e-19

87.27

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Query:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN
        MGKDTIA+IITSIRNADMNRK  VRI STNIT++IVKILLREGFIEN+RKHRESN
Subjt:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN

A4QL54 30S ribosomal protein S8, chloroplastic

2.3e-19

85.45

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Query:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN
        MGKDTIA+IITSIRNADMNRK MVRI STNIT++IVKILLREGF+EN+RKHRE+N
Subjt:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN

A6MM72 30S ribosomal protein S8, chloroplastic

5.0e-19

85.45

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Query:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN
        MG+DTIANIITSIRNADM++K  VRI STNIT+NIVKILLREGFIEN+RKHRESN
Subjt:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN

Q4VZK0 30S ribosomal protein S8, chloroplastic

1.4e-21

92.73

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Query:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN
        MGKDTIANIITSIRNADMNRK MVRIP+TNIT+NIVKILLREGFIEN+RKHRESN
Subjt:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN

Arabidopsis top hits

e value

%identity

Alignment

ATCG00770.1 ribosomal protein S8

8.0e-20

85.45

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Query:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN
        MGKDTIA+IITSIRNADMNRK  VRI STNIT++IVKILLREGFIEN+RKHRE+N
Subjt:  MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESN

Sequences

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CDS sequence

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ATGGGTAAGGACACTATTGCTAACATAATAACCTCTATTCGCAATGCTGACATGAATAGAAAAGAAATGGTTCGAATACCATCTACTAACATCACCAAAAACATTGTTAA
AATACTTTTACGAGAAGGTTTTATTGAAAACATAAGGAAACATAGGGAAAGCAACTTAACATGTTTACTTCCATTGTGGATTCAAGGTTGTGCGTGCTCTACGTCTGGAG
GATTTGCGAATCCCTACTGCTTATATTAA

mRNA sequence

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Protein sequence

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MGKDTIANIITSIRNADMNRKEMVRIPSTNITKNIVKILLREGFIENIRKHRESNLTCLLPLWIQGCACSTSGGFANPYCLY

CmaCh00G001050 (gene) of Cucurbita maxima (Rimu) v1.1 genome