CuGenDBv2

Gene ID	CmaCh00G001900
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	Cma_Chr00:12796330..12796893
RNA-Seq Expression	CmaCh00G001900
Synteny	CmaCh00G001900
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8702390.1 hypothetical protein F3Y22_tig00110483pilonHSYRG00411 [Hibiscus syriacus]

1.1e-66

77.78

Show/hide

Query:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK
        MKALLGSQDAWEVVEEGFEEP   T YT AQ K LKE RSKDK ALYMLFR VDESGFEKIA A TSKEAWD L KVFKG +RVKQ+  QTLRGELES+K
Subjt:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK

Query:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQ-CKKKKEESLDQAL
        +KE E+VSDYITRV+TV  Q+NRN E L E RVV+KILRSLT+NFENVVCAIEESKDL   TV+EL GSLEAHEQ  KKKKEE+L+QAL
Subjt:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQ-CKKKKEESLDQAL

KAE8705809.1 hypothetical protein F3Y22_tig00110418pilonHSYRG00346 [Hibiscus syriacus]

1.9e-66

77.78

Show/hide

Query:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK
        MKALLGSQDAWEVVEEGF+EP   T YTAAQ K LKE RSKDK ALYMLFR VDESGFEKIA A TSKEAWD L KVFKG DRVKQ+  QTLR ELES+K
Subjt:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK

Query:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQ-CKKKKEESLDQAL
        MKE E+VSDYITRV+TV  Q+NRN E L E RV++KILRSLT+NFENVVCAIEESKDL   TV+EL GSLEAHEQ  KKKKEE+L+QAL
Subjt:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQ-CKKKKEESLDQAL

KAE8721174.1 hypothetical protein F3Y22_tig00016637pilonHSYRG00095 [Hibiscus syriacus]

4.4e-68

79.37

Show/hide

Query:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK
        MKALLGSQDAWEVVEEGFEEP   T YTAAQ K LKE RSKDK ALYMLFR VDESGFEKIA A TSKEAWD L KVFKG DRVKQ+  QTLRGELES+K
Subjt:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK

Query:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQ-CKKKKEESLDQAL
        MKE E+VSDYITRV+TV  Q+NRN E L E RVV+KILRSLT+NFENVVCAIEESKDL   TV+EL GSLEAHEQ  KKKKEE+L+QAL
Subjt:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQ-CKKKKEESLDQAL

KAE8732752.1 hypothetical protein F3Y22_tig00001732pilonHSYRG00018 [Hibiscus syriacus]

4.9e-67

78.31

Show/hide

Query:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK
        MKALLGSQDAWEVVEEGFEEP   T YTAAQ K LKE RSKDK ALYMLFR VDESGFEKIA A TSKEAWD L KVFKG DRVKQ+  QTLRGELES+K
Subjt:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK

Query:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQCKKK-KEESLDQAL
        MKE E+VSDYITRV+TV  Q+N N E L E RVV+KILRSLT+NFENVVCAIEESKDL   T++EL GSLEAHEQ KKK KEE+L+QAL
Subjt:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQCKKK-KEESLDQAL

XP_040962217.1 uncharacterized protein LOC121223796 [Gossypium hirsutum]

4.9e-67

77.25

Show/hide

Query:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK
        MKALLGSQD WEVV+EGF EP     YTAAQNK LKE+RSKDK ALYMLFR VDESGFEKIA ATTSKEAWD L KV+KG DRVKQ+  QTLRGELE MK
Subjt:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK

Query:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQ-CKKKKEESLDQAL
        MKESE VSDYITRV+TV  Q+NRN E L + RVV+KILRSLT++FEN VCAIEESKDL   TVDEL GSLEAHEQ  KKKKEE+L+QAL
Subjt:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQ-CKKKKEESLDQAL

TrEMBL top hits

e value

%identity

Alignment

A0A059QBK0 Polyprotein

3.4e-66

75.66

Show/hide

Query:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK
        MKALLGSQD+WEVVEEGFEEP   T YTAAQ K LKE+RSKDK ALYML+R VDE+ FEKIA A+TSKEAWD LEKVFKG DRVKQ+  QTLRGELE+MK
Subjt:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK

Query:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQ-CKKKKEESLDQAL
        M ESE+VSDYITRV+ V  Q+NRN E L + RVV+KILR+LT+NFE++VCAIEESKDL   TVDEL GSLEAHEQ  KKKKEE+L+QAL
Subjt:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQ-CKKKKEESLDQAL

A0A6A3AD07 Uncharacterized protein

5.3e-67

77.78

Show/hide

Query:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK
        MKALLGSQDAWEVVEEGFEEP   T YT AQ K LKE RSKDK ALYMLFR VDESGFEKIA A TSKEAWD L KVFKG +RVKQ+  QTLRGELES+K
Subjt:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK

Query:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQ-CKKKKEESLDQAL
        +KE E+VSDYITRV+TV  Q+NRN E L E RVV+KILRSLT+NFENVVCAIEESKDL   TV+EL GSLEAHEQ  KKKKEE+L+QAL
Subjt:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQ-CKKKKEESLDQAL

A0A6A3ASE2 Uncharacterized protein

9.0e-67

77.78

Show/hide

Query:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK
        MKALLGSQDAWEVVEEGF+EP   T YTAAQ K LKE RSKDK ALYMLFR VDESGFEKIA A TSKEAWD L KVFKG DRVKQ+  QTLR ELES+K
Subjt:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK

Query:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQ-CKKKKEESLDQAL
        MKE E+VSDYITRV+TV  Q+NRN E L E RV++KILRSLT+NFENVVCAIEESKDL   TV+EL GSLEAHEQ  KKKKEE+L+QAL
Subjt:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQ-CKKKKEESLDQAL

A0A6A3BX58 Uncharacterized protein

2.1e-68

79.37

Show/hide

Query:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK
        MKALLGSQDAWEVVEEGFEEP   T YTAAQ K LKE RSKDK ALYMLFR VDESGFEKIA A TSKEAWD L KVFKG DRVKQ+  QTLRGELES+K
Subjt:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK

Query:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQ-CKKKKEESLDQAL
        MKE E+VSDYITRV+TV  Q+NRN E L E RVV+KILRSLT+NFENVVCAIEESKDL   TV+EL GSLEAHEQ  KKKKEE+L+QAL
Subjt:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQ-CKKKKEESLDQAL

A0A6A3CZT6 Uncharacterized protein

2.4e-67

78.31

Show/hide

Query:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK
        MKALLGSQDAWEVVEEGFEEP   T YTAAQ K LKE RSKDK ALYMLFR VDESGFEKIA A TSKEAWD L KVFKG DRVKQ+  QTLRGELES+K
Subjt:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMK

Query:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQCKKK-KEESLDQAL
        MKE E+VSDYITRV+TV  Q+N N E L E RVV+KILRSLT+NFENVVCAIEESKDL   T++EL GSLEAHEQ KKK KEE+L+QAL
Subjt:  MKESENVSDYITRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQCKKK-KEESLDQAL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G48720.1 unknown protein

1.0e-09

42.03

Show/hide

Query:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKE
        MKA+LG+ D WE+VE+GF EP+     +  Q   L++ R +DK AL ++++ +DE  FEK+  AT++K+
Subjt:  MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFR-VDESGFEKIARATTSKE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAAGCTCTTCTTGGTTCGCAAGACGCATGGGAGGTGGTCGAAGAAGGTTTCGAAGAACCGAAGGAAATCACGGTTTATACGGCGGCGCAAAACAAGGTGCTAAAAGA
ATTACGGTCAAAGGATAAGACAGCTTTATACATGTTGTTCCGGGTTGATGAGTCGGGCTTTGAGAAGATTGCAAGGGCAACTACTTCAAAAGAAGCGTGGGACACTCTAG
AAAAGGTGTTCAAAGGAACTGACCGAGTCAAGCAGATGGGTTTCCAGACTCTGCGTGGCGAGTTGGAGAGCATGAAGATGAAAGAGTCAGAAAATGTATCTGACTATATT
ACACGTGTAGAAACTGTGGCGTATCAGATAAATAGAAACAGAGAAATGTTACCCGAGATGCGGGTTGTTCAGAAAATCTTGAGGTCATTAACCAACAACTTCGAGAATGT
CGTATGTGCCATAGAAGAGTCGAAGGACCTGACGAAGTCCACAGTCGATGAACTTGATGGTTCTCTCGAGGCACACGAGCAATGCAAGAAAAAGAAAGAAGAGTCACTCG
ATCAAGCGCTTTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MKALLGSQDAWEVVEEGFEEPKEITVYTAAQNKVLKELRSKDKTALYMLFRVDESGFEKIARATTSKEAWDTLEKVFKGTDRVKQMGFQTLRGELESMKMKESENVSDYI
TRVETVAYQINRNREMLPEMRVVQKILRSLTNNFENVVCAIEESKDLTKSTVDELDGSLEAHEQCKKKKEESLDQAL

CmaCh00G001900 (gene) of Cucurbita maxima (Rimu) v1.1 genome