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CmaCh00G001920 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh00G001920
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionUPF0481 protein At3g47200-like
Genome locationCma_Chr00:12892640..12892922
RNA-Seq ExpressionCmaCh00G001920
SyntenyCmaCh00G001920
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004158 - Protein of unknown function DUF247, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022932942.1 UPF0481 protein At3g47200-like [Cucurbita moschata]7.3e-1678.18Show/hide
Query:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE
        MMRNLIAF++FYVGNDNKCIQY+SLL+HLICT+KD+S+L++A II+NEIGGS+IE
Subjt:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE

XP_022932991.1 UPF0481 protein At3g47200-like [Cucurbita moschata]3.0e-1785.45Show/hide
Query:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE
        MMRNLIAF++FYVGNDNKCIQY+SLLEHLICT+KD+SLL++A IIVNEIGGSNIE
Subjt:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE

XP_022974374.1 UPF0481 protein At3g47200-like [Cucurbita maxima]9.5e-1676.36Show/hide
Query:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE
        MMRNLIAF++FYVGNDNKCIQY+SLL+HLICT+KD+S+L++A I++NEIGGS+IE
Subjt:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE

XP_023548424.1 UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo]3.0e-1785.45Show/hide
Query:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE
        MMRNLIAF++FYVGNDNKCIQYMSLLEHLICT+KD+SLL++A IIVN+IGGSNIE
Subjt:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE

XP_023548954.1 UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo]5.6e-1678.18Show/hide
Query:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE
        MMRNLIAF++FYVGNDNKCIQY+SLL+HLICT+KD+S+L++A II+NEIGGS+IE
Subjt:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE

TrEMBL top hitse value%identityAlignment
A0A6J1EXW9 UPF0481 protein At3g47200-like1.4e-1785.45Show/hide
Query:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE
        MMRNLIAF++FYVGNDNKCIQY+SLLEHLICT+KD+SLL++A IIVNEIGGSNIE
Subjt:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE

A0A6J1EY59 UPF0481 protein At3g47200-like3.5e-1678.18Show/hide
Query:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE
        MMRNLIAF++FYVGNDNKCIQY+SLL+HLICT+KD+S+L++A II+NEIGGS+IE
Subjt:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE

A0A6J1HBC7 UPF0481 protein At3g47200-like1.1e-0960Show/hide
Query:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE
        +MRNLIAF++F +GN +KCIQY++ ++ LI T+KD+SLL++A II+N+IGGSN E
Subjt:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE

A0A6J1IDP8 UPF0481 protein At3g47200-like1.0e-1576.36Show/hide
Query:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE
        MM+NLIAF++ YVGNDNKCIQY+SLL+HLICT+KD+S+L++ARII+NEIGGS+IE
Subjt:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE

A0A6J1IHF5 UPF0481 protein At3g47200-like4.6e-1676.36Show/hide
Query:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE
        MMRNLIAF++FYVGNDNKCIQY+SLL+HLICT+KD+S+L++A I++NEIGGS+IE
Subjt:  MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCGAAACCTGATAGCGTTTAAGTATTTTTACGTTGGAAATGACAACAAATGTATCCAATATATGTCGTTACTAGAACATTTGATATGTACAAAGAAAGATATGAG
TTTACTCATGGAAGCCAGAATCATAGTCAACGAAATTGGAGGTAGTAATATAGAAAACTATTTAACAATCTCTGTAAATTTGTTACGGTCCCAAATTGTTGCCACTTCAA
CTATATCAACAAACCTTTATGAGAACACTGCAATAAACGATGGAACATGGCGATAG
mRNA sequenceShow/hide mRNA sequence
ATGATGCGAAACCTGATAGCGTTTAAGTATTTTTACGTTGGAAATGACAACAAATGTATCCAATATATGTCGTTACTAGAACATTTGATATGTACAAAGAAAGATATGAG
TTTACTCATGGAAGCCAGAATCATAGTCAACGAAATTGGAGGTAGTAATATAGAAAACTATTTAACAATCTCTGTAAATTTGTTACGGTCCCAAATTGTTGCCACTTCAA
CTATATCAACAAACCTTTATGAGAACACTGCAATAAACGATGGAACATGGCGATAG
Protein sequenceShow/hide protein sequence
MMRNLIAFKYFYVGNDNKCIQYMSLLEHLICTKKDMSLLMEARIIVNEIGGSNIENYLTISVNLLRSQIVATSTISTNLYENTAINDGTWR