; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh00G002020 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh00G002020
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionPhotosystem II
Genome locationCma_Chr00:13191417..13193815
RNA-Seq ExpressionCmaCh00G002020
SyntenyCmaCh00G002020
Gene Ontology termsGO:0009767 - photosynthetic electron transport chain (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009521 - photosystem (cellular component)
GO:0009055 - electron transfer activity (molecular function)
GO:0016168 - chlorophyll binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000932 - Photosystem antenna protein-like
IPR036001 - Photosystem antenna protein-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAD49278.1 TPA_asm: hypothetical protein HUJ06_031945 [Nelumbo nucifera]1.1e-2848.65Show/hide
Query:  HGATVENPLFEDG---------NP-------------W--------------------------EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIP
        HGATVEN LFEDG         NP             W                          EDPEFETF  YT+N+LL EGIR WMAAQDQPHEN  
Subjt:  HGATVENPLFEDG---------NP-------------W--------------------------EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIP

Query:  YLILPEELVVTKKQPPG----------FGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP
         LI PEE++     PPG          + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+YEQ  I LP
Subjt:  YLILPEELVVTKKQPPG----------FGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP

DAD49278.1 TPA_asm: hypothetical protein HUJ06_031945 [Nelumbo nucifera]3.2e-0486.67Show/hide
Query:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV
        VATEINAVNYVSPRSWL TSHF+LGF  FV
Subjt:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV

DAD49278.1 TPA_asm: hypothetical protein HUJ06_031945 [Nelumbo nucifera]4.1e-2864.86Show/hide
Query:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEK
        EDPEFETF  YT+N+LL EGIR WMAAQDQPHEN   LI PEE++        + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEK
Subjt:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEK

Query:  PIYEQRSIFLP
        P+YEQ  I LP
Subjt:  PIYEQRSIFLP

RHN59703.1 putative photosystem II [Medicago truncatula]3.2e-0486.67Show/hide
Query:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV
        VATEINAVNYVSPRSWL TSHF+LGF  FV
Subjt:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV

RHN59703.1 putative photosystem II [Medicago truncatula]4.1e-2865.22Show/hide
Query:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQ-PPGF---GGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHF
        EDPEFETF  YT+N+LL EGIR WMAAQDQPHEN   LI PEE++  + Q   GF    GNARLI+L GKLLGA          I+FWAGAMNLFEVAHF
Subjt:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQ-PPGF---GGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHF

Query:  VPEKPIYEQRSIFLP
        VPEKP+YEQ  I LP
Subjt:  VPEKPIYEQRSIFLP

XP_042528145.1 photosystem II CP43 reaction center protein [Dipodomys spectabilis]4.1e-2864.86Show/hide
Query:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEK
        EDPEFETF  YT+N+LL EGIR WMAAQDQPHEN   LI PEE++        + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEK
Subjt:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEK

Query:  PIYEQRSIFLP
        P+YEQ  I LP
Subjt:  PIYEQRSIFLP

XP_042528145.1 photosystem II CP43 reaction center protein [Dipodomys spectabilis]4.1e-0486.67Show/hide
Query:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV
        VATEINAVNYVSPRSWL TSHF+LGF  FV
Subjt:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV

XP_042528145.1 photosystem II CP43 reaction center protein [Dipodomys spectabilis]4.1e-2864.86Show/hide
Query:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEK
        EDPEFETF  YT+N+LL EGIR WMAAQDQPHEN   LI PEE++        + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEK
Subjt:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEK

Query:  PIYEQRSIFLP
        P+YEQ  I LP
Subjt:  PIYEQRSIFLP

TrEMBL top hitse value%identityAlignment
A0A1Y3BUR5 Multifunctional fusion protein2.0e-2864.86Show/hide
Query:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEK
        EDPEFETF  YT+N+LL EGIR WMAAQDQPHEN   LI PEE++        + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEK
Subjt:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEK

Query:  PIYEQRSIFLP
        P+YEQ  I LP
Subjt:  PIYEQRSIFLP

A0A1Y3BUR5 Multifunctional fusion protein2.0e-0486.67Show/hide
Query:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV
        VATEINAVNYVSPRSWL TSHF+LGF  FV
Subjt:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV

A0A1Y3BUR5 Multifunctional fusion protein2.0e-2864.86Show/hide
Query:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEK
        EDPEFETF  YT+N+LL EGIR WMAAQDQPHEN   LI PEE++        + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEK
Subjt:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEK

Query:  PIYEQRSIFLP
        P+YEQ  I LP
Subjt:  PIYEQRSIFLP

A0A251UW90 Photosystem II D2 protein2.0e-0486.67Show/hide
Query:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV
        VATEINAVNYVSPRSWL TSHF+LGF  FV
Subjt:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV

A0A251UW90 Photosystem II D2 protein2.0e-2864.86Show/hide
Query:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEK
        EDPEFETF  YT+N+LL EGIR WMAAQDQPHEN   LI PEE++        + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEK
Subjt:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEK

Query:  PIYEQRSIFLP
        P+YEQ  I LP
Subjt:  PIYEQRSIFLP

A0A251VI22 Photosystem II D2 protein1.3e-0380Show/hide
Query:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV
        VATEIN VNYVSPR+WL TSHF+LGF  FV
Subjt:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV

A0A396I4M6 Photosystem II D2 protein2.0e-2864.86Show/hide
Query:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEK
        EDPEFETF  YT+N+LL EGIR WMAAQDQPHEN   LI PEE++        + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEK
Subjt:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEK

Query:  PIYEQRSIFLP
        P+YEQ  I LP
Subjt:  PIYEQRSIFLP

A0A396I4M6 Photosystem II D2 protein1.5e-0486.67Show/hide
Query:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV
        VATEINAVNYVSPRSWL TSHF+LGF  FV
Subjt:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV

A0A396I4M6 Photosystem II D2 protein2.0e-2864.86Show/hide
Query:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEK
        EDPEFETF  YT+N+LL EGIR WMAAQDQPHEN   LI PEE++        + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEK
Subjt:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEK

Query:  PIYEQRSIFLP
        P+YEQ  I LP
Subjt:  PIYEQRSIFLP

SwissProt top hitse value%identityAlignment
A9LYI1 Photosystem II CP43 reaction center protein2.3e-1367.24Show/hide
Query:  FGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP
        + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+YEQ  I LP
Subjt:  FGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP

A9LYI1 Photosystem II CP43 reaction center protein5.4e-0786.67Show/hide
Query:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV
        VATEINAVNYVSPRSWL TSHF+LGF  FV
Subjt:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV

B1NTP4 Photosystem II CP43 reaction center protein1.3e-1360.56Show/hide
Query:  LVVTKKQPPGF---GGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP
        LV   ++  GF    GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+YEQ  I LP
Subjt:  LVVTKKQPPGF---GGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP

B1NTP4 Photosystem II CP43 reaction center protein5.4e-0786.67Show/hide
Query:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV
        VATEINAVNYVSPRSWL TSHF+LGF  FV
Subjt:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV

P48187 Photosystem II CP43 reaction center protein6.0e-1466.67Show/hide
Query:  PGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP
        P + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+YEQ  I LP
Subjt:  PGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP

P48187 Photosystem II CP43 reaction center protein5.4e-0786.67Show/hide
Query:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV
        VATEINAVNYVSPRSWL TSHF+LGF  FV
Subjt:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV

Q3BAP4 Photosystem II CP43 reaction center protein1.3e-1360.56Show/hide
Query:  LVVTKKQPPGF---GGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP
        LV   ++  GF    GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+YEQ  I LP
Subjt:  LVVTKKQPPGF---GGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP

Q3BAP4 Photosystem II CP43 reaction center protein4.2e-0786.67Show/hide
Query:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV
        VATEINAVNYVSPRSWL TSHF+LGF  FV
Subjt:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV

Q8HB52 Photosystem II CP43 reaction center protein2.3e-1367.24Show/hide
Query:  FGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP
        + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+YEQ  I LP
Subjt:  FGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP

Q8HB52 Photosystem II CP43 reaction center protein9.2e-0783.33Show/hide
Query:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV
        VATEINAVNYVSPRSWL TSHF+LGF  F+
Subjt:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV

Arabidopsis top hitse value%identityAlignment
ATCG00270.1 photosystem II reaction center protein D9.8e-1273.33Show/hide
Query:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELV
        EDPEFETF  YT+N+LL EGIR WMAAQDQPHEN   LI PEE++
Subjt:  EDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELV

ATCG00280.1 photosystem II reaction center protein C1.6e-1467.24Show/hide
Query:  FGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP
        + GNARLI+L GKLLGA          I+FWAGAMNLFEVAHFVPEKP+YEQ  I LP
Subjt:  FGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFEVAHFVPEKPIYEQRSIFLP

ATCG00280.1 photosystem II reaction center protein C5.0e-0886.67Show/hide
Query:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV
        VATEINAVNYVSPRSWL TSHF+LGF  FV
Subjt:  VATEINAVNYVSPRSWLVTSHFLLGFPPFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTCATGGTGCTACCGTAGAAAATCCCTTATTTGAAGATGGAAATCCGTGGGAAGATCCTGAATTTGAGACTTTCTATCTATACACCCAAAATCTTCTCTTAACCGA
AGGGATTCGTACTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACATACCTTACCTTATATTACCTGAGGAGCTGGTCGTAACCAAGAAACAACCCCCTGGTTTCGGTG
GGAATGCCCGACTTATCCATTTATACGGTAAACTACTGGGGGCGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGTTCTGGGCCGGAGCAATGAACCTATTCGAA
GTGGCTCATTTCGTACCTGAGAAGCCCATCTATGAACAAAGATCCATTTTCCTTCCCCGCCCGCCTAGCTACTACTCTAGGTTGGGGCGTAGGCACTGGTGGGCAAAGAT
ATACAACCTTGGCAAGACCTTACGCAGAATATATGACCCATGCTCCTTTAGGTTCTTTAAATTACGGGGGTGGCGTGTAGCTACCGAAATTAATGCAGTCAATTATGTCT
CTCCTAGAAGTTGGTTAGTTACCTCTCATTTTCTTCTAGGATTCCCCCCATTTGTCATTTATGGCATGCAGGAAGGGCTCGGGCAGCTGCCGCAGGATTTGAAAAAGGAA
TTGATCGACCTC
mRNA sequenceShow/hide mRNA sequence
ATGACTGGTTACGGAGGGACCGGTTCGGTGTTGTAGGTGTATTGGGCGCGGCTATGCGTCATGGTGCTACCGTAGAAAATCCCTTATTTGAAGATGGAAATCCGTGGGAA
GATCCTGAATTTGAGACTTTCTATCTATACACCCAAAATCTTCTCTTAACCGAAGGGATTCGTACTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACATACCTTACCT
TATATTACCTGAGGAGCTGGTCGTAACCAAGAAACAACCCCCTGGTTTCGGTGGGAATGCCCGACTTATCCATTTATACGGTAAACTACTGGGGGCGGGCTCATGTAGCC
CATGCCGGATTAATCGTATTCTGTTCTGGGCCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCTGAGAAGCCCATCTATGAACAAAGATCCATTTTCCTTCCC
CGCCCGCCTAGCTACTACTCTAGGTTGGGGCGTAGGCACTGGTGGGCAAAGATATACAACCTTGGCAAGACCTTACGCAGAATATATGACCCATGCTCCTTTAGGTTCTT
TAAATTACGGGGGTGGCGTGTAGCTACCGAAATTAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGTTACCTCTCATTTTCTTCTAGGATTCCCCCCATTTGTCA
TTTATGGCATGCAGGAAGGGCTCGGGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGACCTC
Protein sequenceShow/hide protein sequence
MRHGATVENPLFEDGNPWEDPEFETFYLYTQNLLLTEGIRTWMAAQDQPHENIPYLILPEELVVTKKQPPGFGGNARLIHLYGKLLGAGSCSPCRINRILFWAGAMNLFE
VAHFVPEKPIYEQRSIFLPRPPSYYSRLGRRHWWAKIYNLGKTLRRIYDPCSFRFFKLRGWRVATEINAVNYVSPRSWLVTSHFLLGFPPFVIYGMQEGLGQLPQDLKKE
LIDL