CuGenDBv2

Gene ID	CmaCh00G002500
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	Ribulose bisphosphate carboxylase large chain
Genome location	Cma_Chr00:18314108..18314922
RNA-Seq Expression	CmaCh00G002500
Synteny	CmaCh00G002500
Gene Ontology terms	GO:0009853 - photorespiration (biological process) GO:0019253 - reductive pentose-phosphate cycle (biological process) GO:0009507 - chloroplast (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0004497 - monooxygenase activity (molecular function) GO:0016984 - ribulose-bisphosphate carboxylase activity (molecular function)
InterPro domains	IPR033966 - RuBisCO IPR036376 - Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ACB29085.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Lycoseris crocata]

1.6e-22

79.17

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Query:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK
        GDDSVL          WGNAPGAVANRVALEACVQARNEG DLACEGNE+IREAS WSP+LAAACEVWK IK
Subjt:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK

AER11594.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Tacca integrifolia]

1.2e-22

80.56

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Query:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK
        GDDSVL          WGNAPGAVANRVALEACVQARNEG DLACEGNEIIREAS WSP+LAAACEVWK IK
Subjt:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK

ASR73535.1 ribulose-1,5-bisphosphate carboxygenase/oxygenase large subunit, partial [Dioscorea spicata]

1.2e-22

80.56

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Query:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK
        GDDSVL          WGNAPGAVANRVALEACVQARNEG DLACEGNEIIREAS WSP+LAAACEVWK IK
Subjt:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK

VVW91036.1 unnamed protein product, partial [Nymphaea colorata]

1.6e-22

67.71

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Query:  CSASGFR----WYSRLTYACSNRDGDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK
        CSA GFR    W+     A +   GDDSVL          WGNAPGAVANRVALEACVQARNEG DLA EGNEIIREAS WSP+LAAACEVWK IK
Subjt:  CSASGFR----WYSRLTYACSNRDGDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK

VVW92700.1 unnamed protein product, partial [Nymphaea colorata]

1.6e-22

67.71

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Query:  CSASGFR----WYSRLTYACSNRDGDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK
        CSA GFR    W+     A +   GDDSVL          WGNAPGAVANRVALEACVQARNEG DLA EGNEIIREAS WSP+LAAACEVWK IK
Subjt:  CSASGFR----WYSRLTYACSNRDGDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK

TrEMBL top hits

e value

%identity

Alignment

A0A2H4K9S6 Ribulose bisphosphate carboxylase large chain (Fragment)

5.9e-23

80.56

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Query:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK
        GDDSVL          WGNAPGAVANRVALEACVQARNEG DLACEGNEIIREAS WSP+LAAACEVWK IK
Subjt:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK

A0A5K1HSP8 RuBisCO_large domain-containing protein (Fragment)

7.7e-23

67.71

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Query:  CSASGFR----WYSRLTYACSNRDGDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK
        CSA GFR    W+     A +   GDDSVL          WGNAPGAVANRVALEACVQARNEG DLA EGNEIIREAS WSP+LAAACEVWK IK
Subjt:  CSASGFR----WYSRLTYACSNRDGDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK

A0A5K1HUJ3 RuBisCO_large domain-containing protein (Fragment)

7.7e-23

67.71

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Query:  CSASGFR----WYSRLTYACSNRDGDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK
        CSA GFR    W+     A +   GDDSVL          WGNAPGAVANRVALEACVQARNEG DLA EGNEIIREAS WSP+LAAACEVWK IK
Subjt:  CSASGFR----WYSRLTYACSNRDGDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK

B2Y4V7 Ribulose bisphosphate carboxylase large chain (Fragment)

7.7e-23

79.17

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Query:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK
        GDDSVL          WGNAPGAVANRVALEACVQARNEG DLACEGNE+IREAS WSP+LAAACEVWK IK
Subjt:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK

G9JKI6 Ribulose bisphosphate carboxylase large chain (Fragment)

5.9e-23

80.56

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Query:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK
        GDDSVL          WGNAPGAVANRVALEACVQARNEG DLACEGNEIIREAS WSP+LAAACEVWK IK
Subjt:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK

SwissProt top hits

e value

%identity

Alignment

P28390 Ribulose bisphosphate carboxylase large chain (Fragment)

1.4e-24

79.17

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Query:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK
        GDDSVL          WGNAPGAVANRVALEACVQARNEG DLA EGNEIIREAS WSP+LAAACEVWK IK
Subjt:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK

P92306 Ribulose bisphosphate carboxylase large chain (Fragment)

2.3e-24

79.17

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Query:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK
        GDDSVL          WGNAPGAVANRVALEACVQARNEG DLA EGNEIIREAS+WSP+LAAACEVWK IK
Subjt:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK

Q06025 Ribulose bisphosphate carboxylase large chain

1.8e-24

77.78

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Query:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK
        GDDSVL          WGNAPGAVANRVALEACVQARNEG DLACEGNEIIR A+ WSP+LAAACEVWK IK
Subjt:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK

Q09MH0 Ribulose bisphosphate carboxylase large chain

2.3e-24

79.17

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Query:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK
        GDDSVL          WGNAPGAVANRVALEACVQARNEG DLA EGNEIIREAS WSP+LAAACEVWK+IK
Subjt:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK

Q31948 Ribulose bisphosphate carboxylase large chain (Fragment)

2.3e-24

79.17

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Query:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK
        GDDSVL          WGNAPGAVANRVALEACVQARNEG DLA EGNEIIREAS WSP+LAAACEVWK IK
Subjt:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTIK

Arabidopsis top hits

e value

%identity

Alignment

ATCG00490.1 ribulose-bisphosphate carboxylases

2.4e-24

77.46

Show/hide

Query:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTI
        GDDSVL          WGNAPGAVANRVALEACVQARNEG DLA EGNEIIREA  WSP+LAAACEVWK I
Subjt:  GDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLACEGNEIIREASNWSPKLAAACEVWKTI

Sequences

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CDS sequence

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ATGGCTTTGCTCGAGAATTGGGAGTTATTCTTTCACGAACTACTCTTCATATTCAAGATTCATTCCCCTTCACTTCTATTCCCTTCTGTTATGATCGAACGATATTTATT
TCACTCAAGATTGGATCTCTTTACCAGGTGTTCTGCCAGTGGCTTCCGGTGGTATTCACGTTTAACATATGCCTGCTCTAACCGAGATGGAGATGATTCCGTACTACACT
CCAATTCGGTGGAGGAACTTTGGGGCTGGGGGAATGCACCAGGTGCCGTAGCTAACCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGTAATGAGGGCAGTGATCTTGCT
TGTGAGGGTAATGAAATTATCCGTGAGGCTAGTAATTGGAGTCCTAAACTAGCTGCTGCTTGTGAAGTATGGAAGACGATAAAATTATAA

mRNA sequence

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Protein sequence

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MALLENWELFFHELLFIFKIHSPSLLFPSVMIERYLFHSRLDLFTRCSASGFRWYSRLTYACSNRDGDDSVLHSNSVEELWGWGNAPGAVANRVALEACVQARNEGSDLA
CEGNEIIREASNWSPKLAAACEVWKTIKL

CmaCh00G002500 (gene) of Cucurbita maxima (Rimu) v1.1 genome