CuGenDBv2

Gene ID	CmaCh00G003280
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	ATP synthase epsilon chain, chloroplastic
Genome location	Cma_Chr00:26735866..26736286
RNA-Seq Expression	CmaCh00G003280
Synteny	CmaCh00G003280
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0005524 - ATP binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ALO22005.1 AtpE [Cucurbita digitata]

1.7e-11

100

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Query:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

ASY96329.1 ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis]

1.7e-11

100

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Query:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

YP_009751744.1 CF1 subunit epsilon [Herpetospermum pedunculosum]

1.7e-11

100

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Query:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

YP_009751996.1 CF1 subunit epsilon [Cionosicys macranthus]

1.7e-11

100

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Query:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

YP_009752081.1 CF1 subunit epsilon [Dendrosicyos socotranus]

1.7e-11

100

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Query:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU14 ATP synthase epsilon chain, chloroplastic

8.4e-12

100

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Query:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

A0A1X9Q1L0 ATP synthase epsilon chain, chloroplastic

8.4e-12

100

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Query:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

A0A218KG49 ATP synthase epsilon chain, chloroplastic

8.4e-12

100

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Query:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

A0A249RZA2 ATP synthase epsilon chain, chloroplastic

8.4e-12

100

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Query:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

G3ETZ1 ATP synthase epsilon chain, chloroplastic

8.4e-12

100

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Query:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

SwissProt top hits

e value

%identity

Alignment

A0A341 ATP synthase epsilon chain, chloroplastic

1.4e-11

92.5

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Query:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGV
        QQTLEIAEANL+KA+GKRQTIEANLALRRARTRVEAIN V
Subjt:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGV

P07138 ATP synthase epsilon chain, chloroplastic

2.4e-11

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Query:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGV
        QQTLEIAEAN RKA+GKRQTIEANLALRRARTRVEAIN +
Subjt:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGV

P09468 ATP synthase epsilon chain, chloroplastic

2.4e-11

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Query:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGV
        QQTLEIAEANLRKA+GKRQTIEANLALRRARTRVEA+N +
Subjt:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGV

Q49KZ2 ATP synthase epsilon chain, chloroplastic

3.1e-11

87.5

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Query:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGV
        Q+TLE+AEANLRKA+GKRQTIEANLALRRARTRVEAIN +
Subjt:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGV

Q4VZG9 ATP synthase epsilon chain, chloroplastic

2.3e-14

100

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Query:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
        QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS
Subjt:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

Arabidopsis top hits

e value

%identity

Alignment

ATCG00470.1 ATP synthase epsilon chain

1.7e-12

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Query:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGV
        QQTLEIAEANLRKA+GKRQTIEANLALRRARTRVEA+N +
Subjt:  QQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGV

Sequences

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CDS sequence

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ATGATTTTAGTTACGAATAGTGGACAACAAACTCTTGAAATAGCAGAAGCTAACTTGAGGAAAGCTCAGGGCAAGAGACAAACAATCGAGGCAAATTTAGCTCTCAGACG
AGCTAGGACACGAGTAGAGGCTATCAATGGCGTACCTAGT

mRNA sequence

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AACCCAGTCAAGATGATACGGATCAACCCCTTCTTCTTGTGCCAAAGATCTTACCATTTCTGAAGAAACTGAAAGAAATGATTTTAGTTACGAATAGTGGACAACAAACT
CTTGAAATAGCAGAAGCTAACTTGAGGAAAGCTCAGGGCAAGAGACAAACAATCGAGGCAAATTTAGCTCTCAGACGAGCTAGGACACGAGTAGAGGCTATCAATGGCGT
ACCTAGT

Protein sequence

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MILVTNSGQQTLEIAEANLRKAQGKRQTIEANLALRRARTRVEAINGVPS

CmaCh00G003280 (gene) of Cucurbita maxima (Rimu) v1.1 genome