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CmaCh00G003360 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh00G003360
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionarabinogalactan peptide 20-like
Genome locationCma_Chr00:27484463..27484930
RNA-Seq ExpressionCmaCh00G003360
SyntenyCmaCh00G003360
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597108.1 Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia]5.5e-3195.06Show/hide
Query:  ASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
        +SSSDSTPTAFSGFFTCFALIFFIL PLVHAHSSAS  APAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
Subjt:  ASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN

XP_022147463.1 arabinogalactan peptide 20-like [Momordica charantia]2.7e-2583.75Show/hide
Query:  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
        +SS ST  AFS  FT FALIFFI+ PLV AHSSA APAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSY FFLN
Subjt:  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN

XP_022934029.1 arabinogalactan peptide 20-like [Cucurbita moschata]5.9e-3397.5Show/hide
Query:  ASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
        +SSSDSTPTAFSGFFTCFALIFFIL PLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
Subjt:  ASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL

XP_022974647.1 arabinogalactan peptide 16-like [Cucurbita maxima]2.2e-35100Show/hide
Query:  MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
        MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
Subjt:  MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN

XP_023538848.1 arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo]1.1e-3498.78Show/hide
Query:  MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
        MASSSDSTPTAFSGFFTCFALIFFIL PLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
Subjt:  MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN

TrEMBL top hitse value%identityAlignment
A0A6J1D1D7 arabinogalactan peptide 20-like1.3e-2583.75Show/hide
Query:  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
        +SS ST  AFS  FT FALIFFI+ PLV AHSSA APAPAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSY FFLN
Subjt:  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN

A0A6J1E8M6 arabinogalactan peptide 16-like5.4e-2480.49Show/hide
Query:  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSS--ASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
        +SS+ST  AFSG FT F LI FIL PLV AHSS  A APAPAPASDGTSIDQG+AYVLML+ALVLTYLIHPLDASSY FFLN
Subjt:  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSS--ASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN

A0A6J1F1F2 arabinogalactan peptide 20-like2.9e-3397.5Show/hide
Query:  ASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
        +SSSDSTPTAFSGFFTCFALIFFIL PLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
Subjt:  ASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL

A0A6J1IAU1 arabinogalactan peptide 16-like1.0e-35100Show/hide
Query:  MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
        MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
Subjt:  MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN

A0A6J1IQM6 arabinogalactan peptide 20-like3.9e-2276.83Show/hide
Query:  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSS--ASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
        +SS+ST  AFSG FT F LI FIL PL+ AHSS  + APAPAPASDGTSIDQG+AYVLML+ALVLTYLIHPLDASS  FFLN
Subjt:  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSS--ASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 169.8e-1568.18Show/hide
Query:  FTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA-SSYQFF
        F  F+ +F ++L L  A S   APAPAP SDGTSIDQGIAY+LM++ALVLTYLIHPLDA SSY FF
Subjt:  FTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA-SSYQFF

Q8L9T8 Arabinogalactan protein 412.4e-1371.19Show/hide
Query:  FSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH
        F G  T  ++IF ILLP+ HA S  +APAPAP SDGT+IDQGIAYVLML+ALVLTYLIH
Subjt:  FSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH

Q9FK16 Arabinogalactan protein 223.0e-1169.23Show/hide
Query:  FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH
        F +I  ILLP+  +HS  S+PAPAP SDGTSIDQGIAYVLM++AL LTY IH
Subjt:  FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH

Q9M373 Arabinogalactan protein 208.3e-1467.19Show/hide
Query:  FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SSYQFF
        FA +F ++ P   A S   APAP+P SDGTSIDQGIAY+LM++ALVLTYLIHPLDA  SSY FF
Subjt:  FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SSYQFF

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 167.0e-1668.18Show/hide
Query:  FTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA-SSYQFF
        F  F+ +F ++L L  A S   APAPAP SDGTSIDQGIAY+LM++ALVLTYLIHPLDA SSY FF
Subjt:  FTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA-SSYQFF

AT3G61640.1 arabinogalactan protein 205.9e-1567.19Show/hide
Query:  FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SSYQFF
        FA +F ++ P   A S   APAP+P SDGTSIDQGIAY+LM++ALVLTYLIHPLDA  SSY FF
Subjt:  FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SSYQFF

AT5G24105.1 arabinogalactan protein 411.7e-1471.19Show/hide
Query:  FSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH
        F G  T  ++IF ILLP+ HA S  +APAPAP SDGT+IDQGIAYVLML+ALVLTYLIH
Subjt:  FSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH

AT5G53250.1 arabinogalactan protein 222.1e-1269.23Show/hide
Query:  FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH
        F +I  ILLP+  +HS  S+PAPAP SDGTSIDQGIAYVLM++AL LTY IH
Subjt:  FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATTGCCACTCGTTCACGCGCACTCTTCG
GCTTCTGCTCCCGCTCCCGCTCCCGCTAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCAT
CCTCTCGATGCATCTTCCTACCAATTTTTTCTGAATTGA
mRNA sequenceShow/hide mRNA sequence
GATCTCTCTCTTTCTCTCTCTTCTTCATCATTTCTTCCACAGATTTGTTTCTTTGGAGAGGGACAGCAACAATGGCGTCGTCCTCCGATTCTACTCCTACGGCCT
TCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATTGCCACTCGTTCACGCGCACTCTTCGGCTTCTGCTCCCGCTCCCGCTCCCGCTAGCGACG
GGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCATCTTCCTACCAATTTTTTCTGA
ATTGA
Protein sequenceShow/hide protein sequence
MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN