CuGenDBv2

Gene ID	CmaCh00G005390
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	Ribulose bisphosphate carboxylase large chain
Genome location	Cma_Chr00:38808863..38809382
RNA-Seq Expression	CmaCh00G005390
Synteny	CmaCh00G005390
Gene Ontology terms	GO:0009853 - photorespiration (biological process) GO:0019253 - reductive pentose-phosphate cycle (biological process) GO:0009507 - chloroplast (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0004497 - monooxygenase activity (molecular function) GO:0016984 - ribulose-bisphosphate carboxylase activity (molecular function)
InterPro domains	IPR000685 - Ribulose bisphosphate carboxylase, large subunit, C-terminal IPR036376 - Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AAP88011.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Cucumis anguria]

1.4e-37

59.38

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Query:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN
        + +PFRVLAKALR+SGGDHIHAGTVV                                  DWV+LPGVLPVA GGIHVWHMP LTE+     +       
Subjt:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN

Query:  FGAG------GNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV
        FG G      GNAP AVANRVALEACVQARN+ RDLAREGNEIIREASKWSPELAAACEV
Subjt:  FGAG------GNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV

CAA75414.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Muntingia calabura]

2.3e-37

60.65

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Query:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN
        + +PFRVLAKALRLSGGDHIH+GTVV                                  DWV+LPGVLPVA GGIHVWHMP LTE+        I    
Subjt:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN

Query:  FG-AGGNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV
         G   GNAP AVANRVALEACVQARN+ RDLAREGNEIIREASKWSPELAAACEV
Subjt:  FG-AGGNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV

KAG9438618.1 hypothetical protein H6P81_021441 [Aristolochia fimbriata]

1.5e-41

73.81

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Query:  YALPFRVLAKALRLSGGDHIHAGTVVDWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRNFGAG------GNAPSAVANRVALEACVQARNQCR
        + + FRVLAKALRLSGGDHIHAGTVVDWV+LPGVLPVA GGIHVWHMP LTE+     +       FG G      GNAP AVANRVALEACVQARN+ R
Subjt:  YALPFRVLAKALRLSGGDHIHAGTVVDWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRNFGAG------GNAPSAVANRVALEACVQARNQCR

Query:  DLAREGNEIIREASKWSPELAAACEV
        DLAREGNE+IREA+KWSPELAAACEV
Subjt:  DLAREGNEIIREASKWSPELAAACEV

TKR74941.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Populus alba]

3.5e-41

73.81

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Query:  YALPFRVLAKALRLSGGDHIHAGTVVDWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRNFGAG------GNAPSAVANRVALEACVQARNQCR
        + + FRVLAKALR+SGGDHIH GTVVDWV+LPGVLPVA GGIHVWHMP LTE+     +       FG G      GNAP AVANRVALEACVQARN+ R
Subjt:  YALPFRVLAKALRLSGGDHIHAGTVVDWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRNFGAG------GNAPSAVANRVALEACVQARNQCR

Query:  DLAREGNEIIREASKWSPELAAACEV
        DLAREGNEIIREASKWSPELAAACEV
Subjt:  DLAREGNEIIREASKWSPELAAACEV

XP_024200458.1 LOW QUALITY PROTEIN: ribulose bisphosphate carboxylase large chain [Rosa chinensis]

4.7e-38

66.67

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Query:  YALPFRVLAKALRLSGGDHIHAGTVV-----------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRNFG-AGGNAPSAVANRVA
        + + FRVLAKALR+SGGDHIHAGTVV                 DWV+LPGVLPVA GGIHVWHMP LTE+              G   GNAP AVANRVA
Subjt:  YALPFRVLAKALRLSGGDHIHAGTVV-----------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRNFG-AGGNAPSAVANRVA

Query:  LEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV
        LEACVQARN+ RDLAREGNEIIREASKWSPELAAACEV
Subjt:  LEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV

TrEMBL top hits

e value

%identity

Alignment

A0A4U5MY68 Ribulose bisphosphate carboxylase large chain

1.7e-41

73.81

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Query:  YALPFRVLAKALRLSGGDHIHAGTVVDWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRNFGAG------GNAPSAVANRVALEACVQARNQCR
        + + FRVLAKALR+SGGDHIH GTVVDWV+LPGVLPVA GGIHVWHMP LTE+     +       FG G      GNAP AVANRVALEACVQARN+ R
Subjt:  YALPFRVLAKALRLSGGDHIHAGTVVDWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRNFGAG------GNAPSAVANRVALEACVQARNQCR

Query:  DLAREGNEIIREASKWSPELAAACEV
        DLAREGNEIIREASKWSPELAAACEV
Subjt:  DLAREGNEIIREASKWSPELAAACEV

A6XHZ1 Ribulose bisphosphate carboxylase large chain (Fragment)

2.5e-37

58.13

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Query:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN
        + +PFRVLAKALR+SGGDHIH GTVV                                  DWV+LPGVLPVA GGIHVWHMP LTE+     +       
Subjt:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN

Query:  FGAG------GNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV
        FG G      GNAP AVANRVALEACVQARN+ RDLAREGNEI+REASKWSPELAAACEV
Subjt:  FGAG------GNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV

O20259 Ribulose bisphosphate carboxylase large chain (Fragment)

1.1e-37

60.65

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Query:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN
        + +PFRVLAKALRLSGGDHIH+GTVV                                  DWV+LPGVLPVA GGIHVWHMP LTE+        I    
Subjt:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN

Query:  FG-AGGNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV
         G   GNAP AVANRVALEACVQARN+ RDLAREGNEIIREASKWSPELAAACEV
Subjt:  FG-AGGNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV

Q646K5 Ribulose bisphosphate carboxylase large chain (Fragment)

2.5e-37

60.65

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Query:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN
        + + FRVLAKALRLSGGDHIHAGTVV                                  DWV+LPGVLPVA GGIHVWHMP LTE+           R 
Subjt:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN

Query:  FG-AGGNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV
         G   GNAP AVANRVALEACVQARN+ RDLAREGNEIIREASKWSPELAAACEV
Subjt:  FG-AGGNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV

Q7YKG0 Ribulose bisphosphate carboxylase large chain

6.6e-38

59.38

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Query:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN
        + +PFRVLAKALR+SGGDHIHAGTVV                                  DWV+LPGVLPVA GGIHVWHMP LTE+     +       
Subjt:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN

Query:  FGAG------GNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV
        FG G      GNAP AVANRVALEACVQARN+ RDLAREGNEIIREASKWSPELAAACEV
Subjt:  FGAG------GNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV

SwissProt top hits

e value

%identity

Alignment

O20304 Ribulose bisphosphate carboxylase large chain (Fragment)

1.2e-39

59.38

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Query:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN
        + + FRVLAKALRLSGGDHIHAGTVV                                  DWV+LPGVLPVA GGIHVWHMP LTE+     +       
Subjt:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN

Query:  FGAG------GNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV
        FG G      GNAP AVANRVALEACVQARN+ RDLAREGNEIIREASKWSPELAAACEV
Subjt:  FGAG------GNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV

O20346 Ribulose bisphosphate carboxylase large chain (Fragment)

1.2e-39

59.38

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Query:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN
        + + FRVLAKALRLSGGDHIHAGTVV                                  DWV+LPGVLPVA GGIHVWHMP LTE+     +       
Subjt:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN

Query:  FGAG------GNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV
        FG G      GNAP AVANRVALEACVQARN+ RDLAREGNEIIREASKWSPELAAACEV
Subjt:  FGAG------GNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV

P48688 Ribulose bisphosphate carboxylase large chain

1.2e-39

59.38

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Query:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN
        + + FRVLAKALRLSGGDHIHAGTVV                                  DWV+LPGVLPVA GGIHVWHMP LTE+     +       
Subjt:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN

Query:  FGAG------GNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV
        FG G      GNAP AVANRVALEACVQARN+ RDLAREGNEIIREASKWSPELAAACEV
Subjt:  FGAG------GNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV

P48697 Ribulose bisphosphate carboxylase large chain (Fragment)

1.2e-39

59.38

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Query:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN
        + + FRVLAKALRLSGGDHIHAGTVV                                  DWV+LPGVLPVA GGIHVWHMP LTE+     +       
Subjt:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN

Query:  FGAG------GNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV
        FG G      GNAP AVANRVALEACVQARN+ RDLAREGNEIIREASKWSPELAAACEV
Subjt:  FGAG------GNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV

Q07209 Ribulose bisphosphate carboxylase large chain (Fragment)

1.2e-39

59.38

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Query:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN
        + + FRVLAKALRLSGGDHIHAGTVV                                  DWV+LPGVLPVA GGIHVWHMP LTE+     +       
Subjt:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN

Query:  FGAG------GNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV
        FG G      GNAP AVANRVALEACVQARN+ RDLAREGNEIIREASKWSPELAAACEV
Subjt:  FGAG------GNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV

Arabidopsis top hits

e value

%identity

Alignment

ATCG00490.1 ribulose-bisphosphate carboxylases

2.6e-39

58.13

Show/hide

Query:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN
        + + FRVLAKALRLSGGDHIHAGTVV                                  DWV+LPGVLPVA GGIHVWHMP LTE+     +       
Subjt:  YALPFRVLAKALRLSGGDHIHAGTVV----------------------------------DWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRN

Query:  FGAG------GNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV
        FG G      GNAP AVANRVALEACVQARN+ RDLA EGNEIIREA KWSPELAAACEV
Subjt:  FGAG------GNAPSAVANRVALEACVQARNQCRDLAREGNEIIREASKWSPELAAACEV

Sequences

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CDS sequence

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ATGGTCTACTTCTTCACATTCACCGTGCAATGCATGTCGTTATTCATAGAAGAATCATGGTATGCGCTTCCCTTCCGTGTACTAGCTAAAGCGTTACGTTTGTCTGGTGG
AGACCATATTCACGCTGGAACCGTAGTAGATTGGGTCACTTTACCAGGTGTTCTGCCAGTGGCTTTCGGTGGTATTCACGTTTGGCATATGCCTACTCTAACCGAGATGG
AGATGATTCCGTACTACACTCCAATTCGGCGGAGGAACTTTGGGGCTGGGGGGAATGCACCAAGTGCTGTAGCAAACCGAGTAGCTCTAGAAGCATGTGTACAAGCTCGT
AATCAGTGTCGTGATCTTGCTCGTGAGGGTAATGAAATTATCCGTGAGGCTAGTAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAAGTATGA

mRNA sequence

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Protein sequence

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MVYFFTFTVQCMSLFIEESWYALPFRVLAKALRLSGGDHIHAGTVVDWVTLPGVLPVAFGGIHVWHMPTLTEMEMIPYYTPIRRRNFGAGGNAPSAVANRVALEACVQAR
NQCRDLAREGNEIIREASKWSPELAAACEV

CmaCh00G005390 (gene) of Cucurbita maxima (Rimu) v1.1 genome