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CmaCh00G005990 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh00G005990
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionChloroplast envelope membrane protein
Genome locationCma_Chr00:43317611..43323584
RNA-Seq ExpressionCmaCh00G005990
SyntenyCmaCh00G005990
Gene Ontology termsGO:1902600 - proton transmembrane transport (biological process)
GO:0009706 - chloroplast inner membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0015078 - proton transmembrane transporter activity (molecular function)
InterPro domainsIPR004282 - Chloroplast envelope membrane protein, CemA
IPR033966 - RuBisCO
IPR036376 - Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB5537841.1 hypothetical protein DKX38_015374 [Salix brachista]1.2e-1432.43Show/hide
Query:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVD-------------------------------------------------SLQILAW-
        M TSIV NVFGFKALRAL L     P AYI+TFQGPPHGIQV+                                                 S   + W 
Subjt:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVD-------------------------------------------------SLQILAW-

Query:  ----------------------------------------------------------------LIHYCRDNGLLLHIHRAKHAVI--------HRRVMT
                                                                        L HYCRDNGLLLHIHRA HAVI        H RV+ 
Subjt:  ----------------------------------------------------------------LIHYCRDNGLLLHIHRAKHAVI--------HRRVMT

Query:  PIRRRN-------------FGAG------GNAPSAIANRVALEACVHARNQSRDLAHEG
           R +             FG G      GNA  A+ANRVALEACV ARN+ RDLA EG
Subjt:  PIRRRN-------------FGAG------GNAPSAIANRVALEACVHARNQSRDLAHEG

KAF1888206.1 hypothetical protein Lal_00030088 [Lupinus albus]3.6e-1945.16Show/hide
Query:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVDS------------------------------LQILAW-------LIHYCRDNGLLLH
        M TSIV NVFGFK+LRAL L     P AY++TFQGPPHGIQV+                               L  +A        L HYCRDNGL LH
Subjt:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVDS------------------------------LQILAW-------LIHYCRDNGLLLH

Query:  IHRAKHAVIHRRVMTPIRRRNFGAGGNAPSAIANRVALEACVHARNQSRDLAHEG
        IHRA H VI        R++N G       ++ANRVALEACV  RN+ RDL++EG
Subjt:  IHRAKHAVIHRRVMTPIRRRNFGAGGNAPSAIANRVALEACVHARNQSRDLAHEG

KAG6468433.1 hypothetical protein ZIOFF_073118 [Zingiber officinale]1.4e-1838.69Show/hide
Query:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVDSLQILAW-----------------------------------------LIHYCRDNG
        M TSIV +VFGFKALRAL L      T+Y +TFQGPPHGIQ ++ +I                                            L HYCRDNG
Subjt:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVDSLQILAW-----------------------------------------LIHYCRDNG

Query:  LLLHIHRAKHAVI--------HRRVMTPIRRRN--------------------------FGAG------GNAPSAIANRVALEACVHARNQSRDLAHEG
        LLLHIHRA H VI        H RV+    R +                          FG G      GNAP  +ANRVALEACV A N+  DLAHEG
Subjt:  LLLHIHRAKHAVI--------HRRVMTPIRRRN--------------------------FGAG------GNAPSAIANRVALEACVHARNQSRDLAHEG

OMP12921.1 hypothetical protein COLO4_02576 [Corchorus olitorius]5.7e-1734.41Show/hide
Query:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVD-------------------------------------------------SLQILAW-
        M TSIV NVFGFKALRAL L     P AYI+TFQGPPHGIQV+                                                 S   + W 
Subjt:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVD-------------------------------------------------SLQILAW-

Query:  -------------------------LIHYCRDNGLLLHIHRAKHAVI--------HRRVMTPIRRRN---------------------------------
                                 L HYCRDNGLLLHIHRA HAVI        H RV+    R +                                 
Subjt:  -------------------------LIHYCRDNGLLLHIHRAKHAVI--------HRRVMTPIRRRN---------------------------------

Query:  -------FGAG------GNAPSAIANRVALEACVHARNQSRDLAHEG
               FG G      GNAP A+ANRVALEACV ARN+ RDLA EG
Subjt:  -------FGAG------GNAPSAIANRVALEACVHARNQSRDLAHEG

PHT78021.1 Ribulose bisphosphate carboxylase large chain [Capsicum annuum]2.4e-1532.44Show/hide
Query:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVD-------------------------------------------------SLQILAW-
        M TSIV NVFGFKALRAL L     PTAYI+TFQGPPHGIQV+                                                 S   + W 
Subjt:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVD-------------------------------------------------SLQILAW-

Query:  ------------------------------------LIHYCRDNGLLLHIHRAKHAVI--------HRRVMTPIRRRN----------------------
                                            L HYCRDNGLLLHIHRA HAVI        H RV+    R +                      
Subjt:  ------------------------------------LIHYCRDNGLLLHIHRAKHAVI--------HRRVMTPIRRRN----------------------

Query:  ----------------------FGAG------GNAPSAIANRVALEACVHARNQSRDLAHEG
                              FG G      GN P A+ANRVALEACV ARN+ RDLA EG
Subjt:  ----------------------FGAG------GNAPSAIANRVALEACVHARNQSRDLAHEG

TrEMBL top hitse value%identityAlignment
A0A1R3L0R8 Ribulose bisphosphate carboxylase large chain2.7e-1734.41Show/hide
Query:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVD-------------------------------------------------SLQILAW-
        M TSIV NVFGFKALRAL L     P AYI+TFQGPPHGIQV+                                                 S   + W 
Subjt:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVD-------------------------------------------------SLQILAW-

Query:  -------------------------LIHYCRDNGLLLHIHRAKHAVI--------HRRVMTPIRRRN---------------------------------
                                 L HYCRDNGLLLHIHRA HAVI        H RV+    R +                                 
Subjt:  -------------------------LIHYCRDNGLLLHIHRAKHAVI--------HRRVMTPIRRRN---------------------------------

Query:  -------FGAG------GNAPSAIANRVALEACVHARNQSRDLAHEG
               FG G      GNAP A+ANRVALEACV ARN+ RDLA EG
Subjt:  -------FGAG------GNAPSAIANRVALEACVHARNQSRDLAHEG

A0A251VFK2 Putative chloroplast envelope membrane protein, CemA2.3e-1680.33Show/hide
Query:  IGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT--ANIGSLFKSSISVTCSD
        IGFHSPHGWELMIG VYKDFGF HNDQI+SGLVST PVILDT       LFKS ISVTCSD
Subjt:  IGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT--ANIGSLFKSSISVTCSD

A0A2G2Z7Z2 Ribulose bisphosphate carboxylase large chain1.2e-1532.44Show/hide
Query:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVD-------------------------------------------------SLQILAW-
        M TSIV NVFGFKALRAL L     PTAYI+TFQGPPHGIQV+                                                 S   + W 
Subjt:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVD-------------------------------------------------SLQILAW-

Query:  ------------------------------------LIHYCRDNGLLLHIHRAKHAVI--------HRRVMTPIRRRN----------------------
                                            L HYCRDNGLLLHIHRA HAVI        H RV+    R +                      
Subjt:  ------------------------------------LIHYCRDNGLLLHIHRAKHAVI--------HRRVMTPIRRRN----------------------

Query:  ----------------------FGAG------GNAPSAIANRVALEACVHARNQSRDLAHEG
                              FG G      GN P A+ANRVALEACV ARN+ RDLA EG
Subjt:  ----------------------FGAG------GNAPSAIANRVALEACVHARNQSRDLAHEG

A0A2N9GZW2 Ribulose bisphosphate carboxylase large chain2.5e-1837.1Show/hide
Query:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVDS--------LQILAWLIHYCRDNGLLLHI-HRAKHAV--------IHRRVMTPIRRR
        M TSIV NVFGFKALRAL L     PT+Y +TFQGPPHGIQ +         L+    L HYCRDNGLLLHI HRA HAV        IH RV+    R 
Subjt:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVDS--------LQILAWLIHYCRDNGLLLHI-HRAKHAV--------IHRRVMTPIRRR

Query:  N--------------------------------------------------------------------------------FGAG------GNAPSAIAN
        +                                                                                FG G      GNAP A+AN
Subjt:  N--------------------------------------------------------------------------------FGAG------GNAPSAIAN

Query:  RVALEACVHARNQSRDLAHEG
        RVALEACV ARN+ RDLA EG
Subjt:  RVALEACVHARNQSRDLAHEG

A0A6A5NKM5 Ribulose bisphosphate carboxylase large chain1.7e-1945.16Show/hide
Query:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVDS------------------------------LQILAW-------LIHYCRDNGLLLH
        M TSIV NVFGFK+LRAL L     P AY++TFQGPPHGIQV+                               L  +A        L HYCRDNGL LH
Subjt:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVDS------------------------------LQILAW-------LIHYCRDNGLLLH

Query:  IHRAKHAVIHRRVMTPIRRRNFGAGGNAPSAIANRVALEACVHARNQSRDLAHEG
        IHRA H VI        R++N G       ++ANRVALEACV  RN+ RDL++EG
Subjt:  IHRAKHAVIHRRVMTPIRRRNFGAGGNAPSAIANRVALEACVHARNQSRDLAHEG

SwissProt top hitse value%identityAlignment
A6MM48 Chloroplast envelope membrane protein1.0e-1692.86Show/hide
Query:  IGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT
        IGFHSPHGWELMIGSVYKDFGF+HNDQI+SGLVST PVILDT
Subjt:  IGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT

B1NWG2 Chloroplast envelope membrane protein1.0e-1692.86Show/hide
Query:  IGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT
        IGFHSPHGWELMIGSVYKDFGF+HNDQI+SGLVST PVILDT
Subjt:  IGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT

Q0G9K7 Chloroplast envelope membrane protein1.0e-1692.86Show/hide
Query:  IGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT
        IGFHSPHGWELMIGSVYKDFGF+HNDQI+SGLVST PVILDT
Subjt:  IGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT

Q0ZJ08 Chloroplast envelope membrane protein1.0e-1692.86Show/hide
Query:  IGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT
        IGFHSPHGWELMIGSVYKDFGF+HNDQI+SGLVST PVILDT
Subjt:  IGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT

Q70XZ1 Chloroplast envelope membrane protein4.5e-1795.24Show/hide
Query:  IGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT
        IGFHSPHGWELMIGSVYKDFGFSHNDQI+SGLVST PVILDT
Subjt:  IGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT

Arabidopsis top hitse value%identityAlignment
ATCG00490.1 ribulose-bisphosphate carboxylases4.2e-1025.46Show/hide
Query:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVD-------------------------------------------------SLQILAW-
        M TSIV NVFGFKAL AL L     P AY +TFQGPPHGIQV+                                                 S   + W 
Subjt:  MLTSIVVNVFGFKALRALHL--FANPTAYIQTFQGPPHGIQVD-------------------------------------------------SLQILAW-

Query:  ----------------------------------------------------------------LIHYCRDNGLLLHIHRAKHAVI--------HRRVMT
                                                                        L HYCRDNGLLLHIHRA HAVI        H RV+ 
Subjt:  ----------------------------------------------------------------LIHYCRDNGLLLHIHRAKHAVI--------HRRVMT

Query:  PIRRRN--------------------------------------------------------------------------------FGAG------GNAP
           R +                                                                                FG G      GNAP
Subjt:  PIRRRN--------------------------------------------------------------------------------FGAG------GNAP

Query:  SAIANRVALEACVHARNQSRDLAHEG
         A+ANRVALEACV ARN+ RDLA EG
Subjt:  SAIANRVALEACVHARNQSRDLAHEG

ATCG00530.1 CemA-like proton extrusion protein-related6.7e-1685.71Show/hide
Query:  IGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT
        IGFHSPHGWELMIG +YKDFGF+H +QILSGLVST PVILDT
Subjt:  IGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGACTTCCATTGTGGTTAATGTATTTGGATTCAAGGCTCTGCGTGCTCTACATCTGTTTGCGAACCCTACTGCTTATATTCAAACTTTCCAAGGCCCGCCTCATGG
TATTCAGGTGGATTCACTGCAAATACTAGCTTGGCTCATTCATTATTGTCGAGATAATGGTCTACTTCTTCACATTCACCGTGCAAAGCATGCCGTTATTCATAGAAGAG
TCATGACTCCAATTCGGCGGAGGAACTTTGGGGCTGGGGGGAATGCACCAAGTGCCATAGCTAACCGAGTAGCTCTTGAAGCATGTGTACATGCTCGTAATCAGAGCCGT
GATCTTGCTCATGAGGGTATAGGATTCCATTCGCCCCATGGTTGGGAACTAATGATTGGTTCTGTCTACAAAGATTTTGGATTTTCTCATAACGATCAAATTCTATCCGG
TCTTGTTTCCACTTTGCCGGTCATTCTGGACACAGCAAATATTGGATCGTTATTTAAATCGTCTATCTCCGTCACTTGTAGTGAT
mRNA sequenceShow/hide mRNA sequence
CTTATCCCCTAGACCCTATTGAAGAAGGTTCTGTTACTAACATGTTGACTTCCATTGTGGTTAATGTATTTGGATTCAAGGCTCTGCGTGCTCTACATCTGTTTGCGAAC
CCTACTGCTTATATTCAAACTTTCCAAGGCCCGCCTCATGGTATTCAGGTGGATTCACTGCAAATACTAGCTTGGCTCATTCATTATTGTCGAGATAATGGTCTACTTCT
TCACATTCACCGTGCAAAGCATGCCGTTATTCATAGAAGAGTCATGACTCCAATTCGGCGGAGGAACTTTGGGGCTGGGGGGAATGCACCAAGTGCCATAGCTAACCGAG
TAGCTCTTGAAGCATGTGTACATGCTCGTAATCAGAGCCGTGATCTTGCTCATGAGGGTATAGGATTCCATTCGCCCCATGGTTGGGAACTAATGATTGGTTCTGTCTAC
AAAGATTTTGGATTTTCTCATAACGATCAAATTCTATCCGGTCTTGTTTCCACTTTGCCGGTCATTCTGGACACAGCAAATATTGGATCGTTATTTAAATCGTCTATCTC
CGTCACTTGTAGTGAT
Protein sequenceShow/hide protein sequence
MLTSIVVNVFGFKALRALHLFANPTAYIQTFQGPPHGIQVDSLQILAWLIHYCRDNGLLLHIHRAKHAVIHRRVMTPIRRRNFGAGGNAPSAIANRVALEACVHARNQSR
DLAHEGIGFHSPHGWELMIGSVYKDFGFSHNDQILSGLVSTLPVILDTANIGSLFKSSISVTCSD