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CmaCh01G002060 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh01G002060
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionTranscription termination factor like
Genome locationCma_Chr01:936643..936930
RNA-Seq ExpressionCmaCh01G002060
SyntenyCmaCh01G002060
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581607.1 hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sororia]5.8e-2472.53Show/hide
Query:  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSDN
        M+ ILE D    F+KIAMF+ VQ+LVY ILS+SS+LFS D+KL+SLSFKPARSVSIRRLLAALSD+P GGELSPS  V TPSS+ RERSD+
Subjt:  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSDN

KAG6606858.1 hypothetical protein SDJN03_00200, partial [Cucurbita argyrosperma subsp. sororia]2.7e-3793.68Show/hide
Query:  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSDNGGRF
        MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRR LAALSDMPSGGELSPS RV+TPS IHRE SD+GGRF
Subjt:  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSDNGGRF

KAG7018107.1 hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyrosperma]4.7e-2672.63Show/hide
Query:  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSDNGGRF
        M+ ILE D    F+KIAMF+ VQ+LVY ILS+SS+LFS D+KL+SLSFKPARSVSIRRLLAALSD+P GGELSPS  V TPSS+ RERSD+ GRF
Subjt:  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSDNGGRF

XP_011651805.2 uncharacterized protein LOC105434941 [Cucumis sativus]1.9e-2773.4Show/hide
Query:  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSDNGGR
        M PI + DAGE FV+IAMF+ +QLLVY ILS+SS+LFS DQK++SLSFKPARSVSIRR LAALSD+P GGELSPS +V TPSS  R+RSD+GGR
Subjt:  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSDNGGR

XP_038905322.1 uncharacterized protein LOC120091388 [Benincasa hispida]1.0e-2876.84Show/hide
Query:  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSDNGGRF
        M PILE D  E FVKIAMF  VQLLVY ILS+SS+LFS DQKL+SLSFKPARSVSIRR LAALSD+P GGE+SP+PRVQTPSS  R+ SD+GGRF
Subjt:  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSDNGGRF

TrEMBL top hitse value%identityAlignment
A0A059D9L9 Uncharacterized protein (Fragment)6.9e-1557.14Show/hide
Query:  MPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSDNG
        M +      +   KIAMFL+VQ LVY ILS+SSD+FSKD+K +SLSFKPARS SIRR+LAA+SD+P+G ELSP P         R R+D G
Subjt:  MPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSDNG

A0A1S3CFW1 uncharacterized protein LOC1035002811.2e-2271.74Show/hide
Query:  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSDNG
        M PI E DAGE FV+IAMF+ VQLLVY ILS+SS+LFS DQKL+SLSFKPARSVSIRR LAALSD+P GGELS       PSS+ R RSD+G
Subjt:  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSDNG

A0A218WLF6 uncharacterized protein LOC1161988358.2e-1662.96Show/hide
Query:  GEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSD
        G+  +K+ MF+LVQ LVY ILS+SSD+FSKD+  KSLSF+P RSVSIRR +AALSDMP+GGE SPSPR  +P S+     D
Subjt:  GEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSD

A0A5A7UC63 Uncharacterized protein1.2e-2271.74Show/hide
Query:  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSDNG
        M PI E DAGE FV+IAMF+ VQLLVY ILS+SS+LFS DQKL+SLSFKPARSVSIRR LAALSD+P GGELS       PSS+ R RSD+G
Subjt:  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSDNG

A0A6A4LYS5 Uncharacterized protein (Fragment)2.0e-1465.71Show/hide
Query:  LEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSP
        +E    +  VK+ MF+LVQ LVY ILS SSD+FS D KL+SLSFKPA SVSIRR+LAA+SD+P GGE SP
Subjt:  LEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G05575.1 unknown protein7.1e-1257.14Show/hide
Query:  VKIAMFLLVQLLVYFILSESSDLFSKDQKLK-SLSFKPARSVSIRRLLAALSDMPSGGELSPS
        +K+++F L+Q LVY ILS+SS +FS  + +K + SF+ ARS+SIRR+LA L DMP+GGE+SPS
Subjt:  VKIAMFLLVQLLVYFILSESSDLFSKDQKLK-SLSFKPARSVSIRRLLAALSDMPSGGELSPS

AT2G31945.1 unknown protein5.4e-1252Show/hide
Query:  GEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLK-SLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSS
        G   +K+A+F LVQ LVY IL +SS +F++   LK + SF+P RSVSIRR+LAAL D+P+G ++SPS    + SS
Subjt:  GEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLK-SLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCCTATTTTGGAAATTGACGCCGGCGAGTTCTTCGTCAAAATCGCCATGTTCCTCTTAGTTCAACTTCTTGTTTATTTTATCCTCTCCGAATCCTCTGAT
CTCTTCTCTAAGGACCAGAAATTGAAATCTCTCAGCTTCAAACCGGCGAGATCCGTCAGTATTCGCCGGTTGTTAGCAGCCCTTTCCGACATGCCTTCCGGCGGC
GAGCTGTCACCGTCGCCGAGAGTTCAGACTCCGTCGTCTATTCACCGGGAGCGTTCCGATAACGGCGGCAGGTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGCCTATTTTGGAAATTGACGCCGGCGAGTTCTTCGTCAAAATCGCCATGTTCCTCTTAGTTCAACTTCTTGTTTATTTTATCCTCTCCGAATCCTCTGAT
CTCTTCTCTAAGGACCAGAAATTGAAATCTCTCAGCTTCAAACCGGCGAGATCCGTCAGTATTCGCCGGTTGTTAGCAGCCCTTTCCGACATGCCTTCCGGCGGC
GAGCTGTCACCGTCGCCGAGAGTTCAGACTCCGTCGTCTATTCACCGGGAGCGTTCCGATAACGGCGGCAGGTTTTAG
Protein sequenceShow/hide protein sequence
MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRLLAALSDMPSGGELSPSPRVQTPSSIHRERSDNGGRF