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CmaCh01G004130 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh01G004130
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Genome locationCma_Chr01:2087020..2091640
RNA-Seq ExpressionCmaCh01G004130
SyntenyCmaCh01G004130
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042447.1 hypothetical protein E6C27_scaffold266G00270 [Cucumis melo var. makuwa]1.0e-2560Show/hide
Query:  MAATLLTPSMTILFIILLLNPPTIS-HAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDSNTFETSHTINPDNQSVPECGRPPRYASCLGQ
        MA T   P+M I+ +ILL N  TI  +  +N+TA EWC G  ENCLIGD +SDSEFLMET+TSRMLLD    +T  T NP+ QSVPECGRPPRY SC+G+
Subjt:  MAATLLTPSMTILFIILLLNPPTIS-HAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDSNTFETSHTINPDNQSVPECGRPPRYASCLGQ

Query:  RYSIPPPENCGPWNR
        + SI  PENC   NR
Subjt:  RYSIPPPENCGPWNR

KAE8649335.1 hypothetical protein Csa_014907 [Cucumis sativus]7.7e-2655.74Show/hide
Query:  MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDSNTFETSHTINPDNQSVPECGRPPRYASCLGQR
        MA T   P+M IL + LL N PT  +  +N+T +EWC G  ENCL+GD + DSEFLMETETSRMLLD    +T  TI+P+ QSV ECGRPPRY SC G+ 
Subjt:  MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDSNTFETSHTINPDNQSVPECGRPPRYASCLGQR

Query:  YSIPPPENCGPWNRAAGQRRFD
          IP PENC   NRA      D
Subjt:  YSIPPPENCGPWNRAAGQRRFD

KAG6607065.1 hypothetical protein SDJN03_00407, partial [Cucurbita argyrosperma subsp. sororia]1.5e-4584.21Show/hide
Query:  MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDSNTFETSHTINPDNQSVPECGRPPRYASCLGQR
        MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLD N+F+T +T NPD QS PEC RPPRY  CLGQ+
Subjt:  MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDSNTFETSHTINPDNQSVPECGRPPRYASCLGQR

Query:  YSIPPPENCGPWNR
          IP PENC   NR
Subjt:  YSIPPPENCGPWNR

KAG7011063.1 hypothetical protein SDJN02_27861, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-4685.96Show/hide
Query:  MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDSNTFETSHTINPDNQSVPECGRPPRYASCLGQR
        MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLD N+F+T +T NPD QS PEC RPPRY SCLGQ+
Subjt:  MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDSNTFETSHTINPDNQSVPECGRPPRYASCLGQR

Query:  YSIPPPENCGPWNR
         SIP PENC   NR
Subjt:  YSIPPPENCGPWNR

KGN53798.1 hypothetical protein Csa_014747 [Cucumis sativus]4.2e-2458.62Show/hide
Query:  MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGR-LENCLIGDLNSDSEFLMETETSRMLLDS-NTFETSHTINPDNQSVPECGRPPRYASCLG
        MAATL  PSM  L  ILLLN P IS+A +N T ++WCD   LENCL+GDLNS SEFLM TE+S ML+D   TF+T    + + +SVP+C RPPRY SCLG
Subjt:  MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGR-LENCLIGDLNSDSEFLMETETSRMLLDS-NTFETSHTINPDNQSVPECGRPPRYASCLG

Query:  QRYSIPPPENCGPWNR
         + SIP PE C   NR
Subjt:  QRYSIPPPENCGPWNR

TrEMBL top hitse value%identityAlignment
A0A0A0KVZ2 Uncharacterized protein6.4e-2658.26Show/hide
Query:  MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDSNTFETSHTINPDNQSVPECGRPPRYASCLGQR
        MA T   P+M IL + LL N PT  +  +N+T +EWC G  ENCL+GD + DSEFLMETETSRMLLD    +T  TI+P+ QSV ECGRPPRY SC G+ 
Subjt:  MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDSNTFETSHTINPDNQSVPECGRPPRYASCLGQR

Query:  YSIPPPENCGPWNRA
          IP PENC   NRA
Subjt:  YSIPPPENCGPWNRA

A0A0A0KW62 Uncharacterized protein2.1e-2458.62Show/hide
Query:  MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGR-LENCLIGDLNSDSEFLMETETSRMLLDS-NTFETSHTINPDNQSVPECGRPPRYASCLG
        MAATL  PSM  L  ILLLN P IS+A +N T ++WCD   LENCL+GDLNS SEFLM TE+S ML+D   TF+T    + + +SVP+C RPPRY SCLG
Subjt:  MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGR-LENCLIGDLNSDSEFLMETETSRMLLDS-NTFETSHTINPDNQSVPECGRPPRYASCLG

Query:  QRYSIPPPENCGPWNR
         + SIP PE C   NR
Subjt:  QRYSIPPPENCGPWNR

A0A5D3BZL1 Uncharacterized protein4.9e-2660Show/hide
Query:  MAATLLTPSMTILFIILLLNPPTIS-HAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDSNTFETSHTINPDNQSVPECGRPPRYASCLGQ
        MA T   P+M I+ +ILL N  TI  +  +N+TA EWC G  ENCLIGD +SDSEFLMET+TSRMLLD    +T  T NP+ QSVPECGRPPRY SC+G+
Subjt:  MAATLLTPSMTILFIILLLNPPTIS-HAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDSNTFETSHTINPDNQSVPECGRPPRYASCLGQ

Query:  RYSIPPPENCGPWNR
        + SI  PENC   NR
Subjt:  RYSIPPPENCGPWNR

A0A6J1G927 uncharacterized protein LOC1114520444.3e-1447.79Show/hide
Query:  AATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDSNTFETSHTINPDNQSVPECGRPPRYASCLGQRY
        AA ++  +M I+  ILLLN PT S A  +              LIGD + DSEFLME+  SR+L  S  F+TS T + +  S   CGRPPRY SCLGQ+ 
Subjt:  AATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDSNTFETSHTINPDNQSVPECGRPPRYASCLGQRY

Query:  SIPPPENCGPWNR
        + PPPENCG +NR
Subjt:  SIPPPENCGPWNR

A0A6J1KBP5 uncharacterized protein LOC1114928548.1e-1346.9Show/hide
Query:  AATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDSNTFETSHTINPDNQSVPECGRPPRYASCLGQRY
        AA ++  +M I+  ILLLN PT S A                 LIGD + DSEFLME+  SR+L  S  F+TS T + +  S   C RPPRY SCLGQ+ 
Subjt:  AATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDSNTFETSHTINPDNQSVPECGRPPRYASCLGQRY

Query:  SIPPPENCGPWNR
        + PPPENCG +NR
Subjt:  SIPPPENCGPWNR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCAACTCTACTGACACCATCAATGACGATTCTGTTCATAATTCTGCTGCTGAACCCCCCAACCATTTCCCATGCAGCCATCAACAAGACCGCCGCCGAGTGGTG
CGACGGCCGCCTGGAGAACTGCCTCATCGGCGACCTGAACTCCGATTCGGAGTTTCTGATGGAAACCGAGACCAGCCGGATGCTGCTGGACTCCAATACTTTCGAAACTT
CCCACACCATTAACCCTGACAACCAATCGGTTCCGGAGTGTGGTCGGCCGCCGCGGTACGCCAGCTGCCTCGGCCAGAGATACAGTATTCCACCCCCGGAAAATTGCGGC
CCCTGGAATCGCGCAGCAGGACAGAGACGATTTGATGGGGAAATTGGTAATAAGGCGTTTTTGGCAACGGTTATGAAGTTAGGAATTAACACTTTGGTGAGTCGAATTTG
TTGTGGTGGAAGAAGAGGGAACAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCAACTCTACTGACACCATCAATGACGATTCTGTTCATAATTCTGCTGCTGAACCCCCCAACCATTTCCCATGCAGCCATCAACAAGACCGCCGCCGAGTGGTG
CGACGGCCGCCTGGAGAACTGCCTCATCGGCGACCTGAACTCCGATTCGGAGTTTCTGATGGAAACCGAGACCAGCCGGATGCTGCTGGACTCCAATACTTTCGAAACTT
CCCACACCATTAACCCTGACAACCAATCGGTTCCGGAGTGTGGTCGGCCGCCGCGGTACGCCAGCTGCCTCGGCCAGAGATACAGTATTCCACCCCCGGAAAATTGCGGC
CCCTGGAATCGCGCAGCAGGACAGAGACGATTTGATGGGGAAATTGGTAATAAGGCGTTTTTGGCAACGGTTATGAAGTTAGGAATTAACACTTTGGTGAGTCGAATTTG
TTGTGGTGGAAGAAGAGGGAACAAATAG
Protein sequenceShow/hide protein sequence
MAATLLTPSMTILFIILLLNPPTISHAAINKTAAEWCDGRLENCLIGDLNSDSEFLMETETSRMLLDSNTFETSHTINPDNQSVPECGRPPRYASCLGQRYSIPPPENCG
PWNRAAGQRRFDGEIGNKAFLATVMKLGINTLVSRICCGGRRGNK