CuGenDBv2

Gene ID	CmaCh01G004560
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	ATP synthase subunit a, chloroplastic
Genome location	Cma_Chr01:2320343..2320889
RNA-Seq Expression	CmaCh01G004560
Synteny	CmaCh01G004560
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0005886 - plasma membrane (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	IPR000568 - ATP synthase, F0 complex, subunit A IPR045082 - ATP synthase, F0 complex, subunit A, bacterial/chloroplast

Homology

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GenBank top hits

e value

%identity

Alignment

QVG63116.1 ATP synthase CF0 subunit IV [Tricyrtis formosana]

2.3e-34

85.37

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Query:  FIFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP
        F+  +++  VRNPQTIPTDGQNFFEYVLEFIR++SKTQIGEEYGPWVPFIGTMFLFIFVS+WSGALLPWKII LPHGELAAP
Subjt:  FIFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP

YP_009135104.1 ATP synthase CF0 A subunit [Greslania sp. McPherson 19217]

2.3e-34

85.19

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Query:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP
        +  +++ +VRNPQTIPTDGQNFFEYVLEFIR++SKTQIGEEYGPWVPFIGTMFLFIFVS+WSGALLPWKII LPHGELAAP
Subjt:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP

YP_009327292.1 ATP synthase CF0 A subunit [Agave americana]

2.3e-34

85.19

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Query:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP
        +  +++ +VRNPQTIPTDGQNFFEYVLEFIR++SKTQIGEEYGPWVPFIGTMFLFIFVS+WSGALLPWKII LPHGELAAP
Subjt:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP

YP_009651648.1 ATP synthase CF0 subunit IV [Dillenia indica]

1.7e-34

86.42

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Query:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP
        +  + + +VRNPQTIPTDGQNFFEYVLEFIR+VSKTQIGEEYGPWVPFIGTMFLFIFVS+WSGALLPWKII LPHGELAAP
Subjt:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP

YP_009688068.1 ATP synthase CF0 subunit IV [Platanthera chlorantha]

2.3e-34

85.19

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Query:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP
        +  +++ +VRNPQTIPTDGQNFFEYVLEFIR++SKTQIGEEYGPWVPFIGTMFLFIFVS+WSGALLPWKII LPHGELAAP
Subjt:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP

TrEMBL top hits

e value

%identity

Alignment

A0A1B0YW41 ATP synthase subunit a, chloroplastic

1.1e-34

85.37

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Query:  FIFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP
        F+  +++  VRNPQTIPTDGQNFFEYVLEFIR++SKTQIGEEYGPWVPFIGTMFLFIFVS+WSGALLPWKII LPHGELAAP
Subjt:  FIFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP

A0A2P1EPA5 ATP synthase subunit a, chloroplastic

1.1e-34

85.19

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Query:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP
        +  +++ +VRNPQTIPTDGQNFFEYVLEFIR++SKTQIGEEYGPWVPFIGTMFLFIFVS+WSGALLPWKII LPHGELAAP
Subjt:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP

A0A387JTK0 ATP synthase subunit a, chloroplastic

1.1e-34

85.19

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Query:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP
        +  +++ +VRNPQTIPTDGQNFFEYVLEFIR++SKTQIGEEYGPWVPFIGTMFLFIFVS+WSGALLPWKII LPHGELAAP
Subjt:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP

A0A4Y5RB97 ATP synthase subunit a, chloroplastic

8.5e-35

86.42

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Query:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP
        +  + + +VRNPQTIPTDGQNFFEYVLEFIR+VSKTQIGEEYGPWVPFIGTMFLFIFVS+WSGALLPWKII LPHGELAAP
Subjt:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP

H2F4X4 ATP synthase subunit a, chloroplastic

1.1e-34

85.19

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Query:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP
        +  +++ +VRNPQTIPTDGQNFFEYVLEFIR++SKTQIGEEYGPWVPFIGTMFLFIFVS+WSGALLPWKII LPHGELAAP
Subjt:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP

SwissProt top hits

e value

%identity

Alignment

B3TN45 ATP synthase subunit a, chloroplastic

6.7e-37

85.19

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Query:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP
        +  ++L  VRNPQTIPTDGQNFFEY+LEFIR++SKTQIGEEYGPWVPFIGTMFLFIFVS+WSGALLPWKII LPHGELAAP
Subjt:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP

P0C2Y5 ATP synthase subunit a, chloroplastic

8.7e-37

85.19

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Query:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP
        +  +++  VRNPQTIPTDGQNFFEYVLEFIR++SKTQIGEEYGPWVPFIGTMFLFIFVS+WSGALLPWKII LPHGELAAP
Subjt:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP

P17344 ATP synthase subunit a, chloroplastic

8.7e-37

85.19

Show/hide

Query:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP
        +  +++  VRNPQTIPTDGQNFFEYVLEFIR++SKTQIGEEYGPWVPFIGTMFLFIFVS+WSGALLPWKII LPHGELAAP
Subjt:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP

Q4VZP5 ATP synthase subunit a, chloroplastic

6.7e-37

86.42

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Query:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP
        +  + +  VRNPQTIPTDGQNFFEYVLEFIR+VSKTQIGEEYGPWVPFIGTMFLFIFVS+WSGALLPWKII LPHGELAAP
Subjt:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP

Q6ENI0 ATP synthase subunit a, chloroplastic

8.7e-37

85.19

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Query:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP
        +  +++  VRNPQTIPTDGQNFFEYVLEFIR++SKTQIGEEYGPWVPFIGTMFLFIFVS+WSGALLPWKII LPHGELAAP
Subjt:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP

Arabidopsis top hits

e value

%identity

Alignment

ATCG00150.1 ATPase, F0 complex, subunit A protein

4.4e-36

81.48

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Query:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP
        +  + +  +RNPQTIPTDGQNFFE+VLEFIR+VSKTQIGEEYGPWVPFIGT+FLFIFVS+WSGALLPWKII LP GELAAP
Subjt:  IFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAP

Sequences

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CDS sequence

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ATGGAGGGGAAACGCCGAGATCTATTTTTTCTTTTCTTTTACCCTCTAAATTTTTTCATTTTTAATAATTTGCTATTTATTGTTCGTAATCCACAAACCATTCCTACTGA
CGGTCAGAATTTCTTCGAATATGTCCTTGAATTCATTCGAAACGTGAGCAAAACCCAAATTGGCGAAGAATATGGTCCGTGGGTTCCCTTTATTGGAACTATGTTTCTAT
TTATTTTTGTTTCGGATTGGTCAGGGGCTCTTTTACCTTGGAAAATCATACCGTTACCTCACGGAGAGTTAGCCGCACCCGTTAAATAA

mRNA sequence

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Protein sequence

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MEGKRRDLFFLFFYPLNFFIFNNLLFIVRNPQTIPTDGQNFFEYVLEFIRNVSKTQIGEEYGPWVPFIGTMFLFIFVSDWSGALLPWKIIPLPHGELAAPVK

CmaCh01G004560 (gene) of Cucurbita maxima (Rimu) v1.1 genome