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CmaCh01G006030 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh01G006030
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationCma_Chr01:3162096..3163768
RNA-Seq ExpressionCmaCh01G006030
SyntenyCmaCh01G006030
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607243.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. sororia]1.9e-6672.68Show/hide
Query:  MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYREADGGHDDECAICLDEFE
        MPLPPSFAASPPPI+AIV+TYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSY+EADGGHDDECAICLDEFE
Subjt:  MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYREADGGHDDECAICLDEFE

Query:  DGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHP
        D QKCRKMN CGHIFH RCI                                        DRWLKV+  CPLCRSCVC VVHP
Subjt:  DGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHP

KAG7036928.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma]9.9e-9264.26Show/hide
Query:  MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYREADGGHDDECAICLDEFE
        MPLPPSFAASPPPI+AIV+TYGLRWTNNNLALIAICFL+ILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSY+EADGGHDDECAICLDEFE
Subjt:  MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYREADGGHDDECAICLDEFE

Query:  DGQKCRKMNKCGHIFHRRCID-------------------------------------------------------------------------------
        D QKCRKMN CGHIFHRRCID                                                                               
Subjt:  DGQKCRKMNKCGHIFHRRCID-------------------------------------------------------------------------------

Query:  ---------READGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHPSSFWRR
                 READGGH  +CAICLDGFEDGQKCRMMNKCGHIFHCRC DRWLKVECHCPLCRSCVCAVVHPSSF RR
Subjt:  ---------READGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHPSSFWRR

XP_022998666.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]2.1e-7076.5Show/hide
Query:  MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYREADGGHDDECAICLDEFE
        MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYREADGGHDDECAICLDEFE
Subjt:  MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYREADGGHDDECAICLDEFE

Query:  DGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHP
        DGQKCRKMNKCGHIFHRRCI                                        DRWLKV+ HCPLCRSCVC VVHP
Subjt:  DGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHP

XP_023524566.1 RING-H2 finger protein ATL66-like [Cucurbita pepo subsp. pepo]4.1e-5361.14Show/hide
Query:  MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFFKS----ELESGSEPAGALPVVREPEIVRIEASVFSYREADGGHDDECAICL
        MP PPS  ASPPPIS +V T GL W +  LALIA+C +IILYLI+LN  KS    E +SG E  GALP    P IVRIEASVF YREADGGH        
Subjt:  MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFFKS----ELESGSEPAGALPVVREPEIVRIEASVFSYREADGGHDDECAICL

Query:  DEFEDGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHPSSFWRR
                                     GG   +CAICLDGFEDGQKCRMMNKCGHIFHCRC DRWLKVECHCPLCRSCVCAVVHPSSFWRR
Subjt:  DEFEDGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHPSSFWRR

XP_023524567.1 RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo]1.7e-6773.22Show/hide
Query:  MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYREADGGHDDECAICLDEFE
        MP PPSFAASPPPISAIV+TYGLRWTNNNLA+IAICFLIILYLILLNFFKSELESGS+PAGALPVVREPEIVRIEASVFSY+EADGGHDDECAICLDEFE
Subjt:  MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYREADGGHDDECAICLDEFE

Query:  DGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHP
        D QKCRKMNKCGHIFHRRCI                                        DRWLKV+ HCPLCRSCVC VVHP
Subjt:  DGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHP

TrEMBL top hitse value%identityAlignment
A0A0A0LXE1 RING-type domain-containing protein3.0e-2541.05Show/hide
Query:  MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFF------KSELESGSEPAGALPVVREPEIVRIEASVFS-YREADGGHDDECA
        M  PP  AASP P +     +     ++   L AICF II+Y +   F+      +SE ++G+     LPV RE EIV+IE  VFS YREA G  +D+  
Subjt:  MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFF------KSELESGSEPAGALPVVREPEIVRIEASVFS-YREADGGHDDECA

Query:  ICLDEFEDGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHP
                                           D +C ICL+ FEDGQKC+ M KCGHIFHC C DRWL+ E  CPLCRSCVC VV+P
Subjt:  ICLDEFEDGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHP

A0A5A7VPW6 RING-H2 finger protein ATL66-like1.5e-2138.78Show/hide
Query:  MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFF----KSELESGSEPAGA---LPVVRE------PEIVRIEASVFSYREADGG
        M  P   AASP P++ I   +     ++   + AICF II+Y I    +     ++ +S     G    LP  RE       EIV+IEA VFSYREA   
Subjt:  MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFF----KSELESGSEPAGA---LPVVRE------PEIVRIEASVFSYREADGG

Query:  HDDECAICLDEFEDGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHP
         +D+     D+ +D                           D +C ICL+ FED QKCR M KCGHIFH  C DRWLK E  CPLCR+CVC VV P
Subjt:  HDDECAICLDEFEDGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHP

A0A5D3BGV5 RING-H2 finger protein ATL66-like1.5e-2138.27Show/hide
Query:  MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFF----KSELESGSEPAGA---LPVVRE------PEIVRIEASVFSYREADGG
        M  P   AASP P++ I   +     ++   + AICF II+Y I    +     ++ +S     G    LP  RE       EIV+IEA VFSYREA   
Subjt:  MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFF----KSELESGSEPAGA---LPVVRE------PEIVRIEASVFSYREADGG

Query:  HDDECAICLDEFEDGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHP
         +D+                                 D   D +C ICL+ FED QKCR M KCGHIFH  C DRWLK E  CPLCR+CVC VV P
Subjt:  HDDECAICLDEFEDGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHP

A0A6J1DN25 RING-H2 finger protein ATL1-like8.9e-2240.96Show/hide
Query:  PPSFAASPPPI---SAIVKTY---GLRWTNNNLALIAICFLIILYLILLNFFKSEL---ESGSEPAGALPVVREPEIVRIEASVFSYREADGGHDDECAI
        PPS+ AS P +   SAI   Y   GL   +   A+ AIC + ILY I  + +KS L   E      GA P VRE E+VRIEAS F+    D G  +EC I
Subjt:  PPSFAASPPPI---SAIVKTY---GLRWTNNNLALIAICFLIILYLILLNFFKSEL---ESGSEPAGALPVVREPEIVRIEASVFSYREADGGHDDECAI

Query:  CLDEFEDGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVH
        CL EF+ G+KC  M+KC H+FHR CI                                        DRWLK E HCPLCRSCVC  VH
Subjt:  CLDEFEDGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVH

A0A6J1KAT3 RING-type E3 ubiquitin transferase1.0e-7076.5Show/hide
Query:  MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYREADGGHDDECAICLDEFE
        MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYREADGGHDDECAICLDEFE
Subjt:  MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYREADGGHDDECAICLDEFE

Query:  DGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHP
        DGQKCRKMNKCGHIFHRRCI                                        DRWLKV+ HCPLCRSCVC VVHP
Subjt:  DGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHP

SwissProt top hitse value%identityAlignment
P0C034 RING-H2 finger protein ATL102.9e-0947.06Show/hide
Query:  GHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCV
        G D++C ICL  F  G++ R++ KC H FH RC D+WL+    CP CR+C+
Subjt:  GHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCV

Q9LF64 RING-H2 finger protein ATL527.5e-1043.08Show/hide
Query:  READGGHD-DDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHPSS
        +  DG  D  DC++CL  FE+ +  R++ KC H FH  C D WLK   +CPLCR+ V  V +P++
Subjt:  READGGHD-DDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHPSS

Q9M0C3 RING-H2 finger protein ATL142.6e-1040Show/hide
Query:  EFEDGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCV
        E+ DG   R + +      + C      GG  DDC +C+DGF  GQ CR + +CGH+FH +C D WL     CP+CR  V
Subjt:  EFEDGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCV

Q9SRM0 RING-H2 finger protein ATL661.4e-1148.21Show/hide
Query:  CIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCR
        C    A+   + +C ICL GFE+G+K +++  C H +HC C DRWLK E  CPLCR
Subjt:  CIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCR

Q9ZV51 RING-H2 finger protein ATL562.2e-0948Show/hide
Query:  HDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCV
        ++ DC +C DGF  GQ CR +  CGH+FH +C D WL     CP+CR+ V
Subjt:  HDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCV

Arabidopsis top hitse value%identityAlignment
AT1G49220.1 RING/U-box superfamily protein2.0e-1047.06Show/hide
Query:  GHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCV
        G D++C ICL  F  G++ R++ KC H FH RC D+WL+    CP CR+C+
Subjt:  GHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCV

AT2G18670.1 RING/U-box superfamily protein1.6e-1048Show/hide
Query:  HDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCV
        ++ DC +C DGF  GQ CR +  CGH+FH +C D WL     CP+CR+ V
Subjt:  HDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCV

AT3G11110.1 RING/U-box superfamily protein9.8e-1348.21Show/hide
Query:  CIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCR
        C    A+   + +C ICL GFE+G+K +++  C H +HC C DRWLK E  CPLCR
Subjt:  CIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCR

AT4G30370.1 RING/U-box superfamily protein1.8e-1140Show/hide
Query:  EFEDGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCV
        E+ DG   R + +      + C      GG  DDC +C+DGF  GQ CR + +CGH+FH +C D WL     CP+CR  V
Subjt:  EFEDGQKCRKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCV

AT5G17600.1 RING/U-box superfamily protein5.4e-1143.08Show/hide
Query:  READGGHD-DDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHPSS
        +  DG  D  DC++CL  FE+ +  R++ KC H FH  C D WLK   +CPLCR+ V  V +P++
Subjt:  READGGHD-DDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHPSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTTGCCGCCATCTTTTGCCGCTTCACCGCCGCCAATTAGCGCCATCGTGAAGACTTACGGACTGAGATGGACGAATAACAATTTGGCTCTGATAGCCATT
TGTTTCCTGATTATACTCTACCTCATCCTCTTAAATTTCTTCAAATCCGAATTAGAATCCGGCAGTGAGCCAGCCGGAGCATTGCCGGTGGTGCGAGAGCCGGAG
ATTGTACGGATTGAGGCCTCGGTTTTCAGTTACAGGGAAGCCGATGGAGGTCACGACGATGAATGTGCGATTTGCCTTGACGAATTTGAAGATGGGCAAAAGTGC
CGGAAGATGAATAAGTGTGGCCATATATTCCACCGCCGCTGCATTGACCGGGAAGCCGACGGAGGTCACGACGACGACTGTGCGATTTGCCTGGACGGATTTGAA
GATGGGCAAAAGTGTCGAATGATGAATAAGTGCGGCCATATATTCCACTGCCGCTGCAGTGACCGGTGGCTCAAGGTGGAGTGCCATTGTCCCCTTTGCCGCAGC
TGCGTTTGTGCCGTCGTTCATCCATCATCTTTTTGGAGAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGTTGCCGCCATCTTTTGCCGCTTCACCGCCGCCAATTAGCGCCATCGTGAAGACTTACGGACTGAGATGGACGAATAACAATTTGGCTCTGATAGCCATT
TGTTTCCTGATTATACTCTACCTCATCCTCTTAAATTTCTTCAAATCCGAATTAGAATCCGGCAGTGAGCCAGCCGGAGCATTGCCGGTGGTGCGAGAGCCGGAG
ATTGTACGGATTGAGGCCTCGGTTTTCAGTTACAGGGAAGCCGATGGAGGTCACGACGATGAATGTGCGATTTGCCTTGACGAATTTGAAGATGGGCAAAAGTGC
CGGAAGATGAATAAGTGTGGCCATATATTCCACCGCCGCTGCATTGACCGGGAAGCCGACGGAGGTCACGACGACGACTGTGCGATTTGCCTGGACGGATTTGAA
GATGGGCAAAAGTGTCGAATGATGAATAAGTGCGGCCATATATTCCACTGCCGCTGCAGTGACCGGTGGCTCAAGGTGGAGTGCCATTGTCCCCTTTGCCGCAGC
TGCGTTTGTGCCGTCGTTCATCCATCATCTTTTTGGAGAAGATGA
Protein sequenceShow/hide protein sequence
MPLPPSFAASPPPISAIVKTYGLRWTNNNLALIAICFLIILYLILLNFFKSELESGSEPAGALPVVREPEIVRIEASVFSYREADGGHDDECAICLDEFEDGQKC
RKMNKCGHIFHRRCIDREADGGHDDDCAICLDGFEDGQKCRMMNKCGHIFHCRCSDRWLKVECHCPLCRSCVCAVVHPSSFWRR