| GenBank top hits | e value | %identity | Alignment |
|---|
| ALO22570.1 RpoC2 [Cucurbita pepo subsp. fraterna] | 2.1e-58 | 96.55 | Show/hide |
Query: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
MGPRCIGIRNQDIGIGLINRFITFQTQPI PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Subjt: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Query: PSNGKIKFNEDLVHPT
PSNGKIKFNEDLVHPT
Subjt: PSNGKIKFNEDLVHPT
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| QJD26635.1 RNA polymerase beta'' subunit [Trichosanthes rosthornii] | 2.1e-58 | 96.55 | Show/hide |
Query: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
MGPRCIGIRNQDIGIGLINRFITFQTQPI PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Subjt: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Query: PSNGKIKFNEDLVHPT
PSNGKIKFNEDLVHPT
Subjt: PSNGKIKFNEDLVHPT
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| YP_009525176.1 RNA polymerase beta subunit [Hodgsonia macrocarpa] | 2.1e-58 | 96.55 | Show/hide |
Query: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
MGPRCIGIRNQDIGIGLINRFITFQTQPI PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Subjt: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Query: PSNGKIKFNEDLVHPT
PSNGKIKFNEDLVHPT
Subjt: PSNGKIKFNEDLVHPT
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| YP_009560825.1 RpoC2 [Trichosanthes kirilowii] | 2.1e-58 | 96.55 | Show/hide |
Query: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
MGPRCIGIRNQDIGIGLINRFITFQTQPI PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Subjt: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Query: PSNGKIKFNEDLVHPT
PSNGKIKFNEDLVHPT
Subjt: PSNGKIKFNEDLVHPT
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| YP_009751980.1 RNA polymerase beta'' subunit [Cionosicys macranthus] | 2.1e-58 | 96.55 | Show/hide |
Query: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
MGPRCIGIRNQDIGIGLINRFITFQTQPI PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Subjt: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Query: PSNGKIKFNEDLVHPT
PSNGKIKFNEDLVHPT
Subjt: PSNGKIKFNEDLVHPT
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A346QNZ0 DNA-directed RNA polymerase subunit beta'' | 1.0e-58 | 96.55 | Show/hide |
Query: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
MGPRCIGIRNQDIGIGLINRFITFQTQPI PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Subjt: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Query: PSNGKIKFNEDLVHPT
PSNGKIKFNEDLVHPT
Subjt: PSNGKIKFNEDLVHPT
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| A0A514YKS0 DNA-directed RNA polymerase subunit beta'' | 1.0e-58 | 96.55 | Show/hide |
Query: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
MGPRCIGIRNQDIGIGLINRFITFQTQPI PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Subjt: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Query: PSNGKIKFNEDLVHPT
PSNGKIKFNEDLVHPT
Subjt: PSNGKIKFNEDLVHPT
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| A0A6H0EPT4 DNA-directed RNA polymerase subunit beta'' | 1.0e-58 | 96.55 | Show/hide |
Query: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
MGPRCIGIRNQDIGIGLINRFITFQTQPI PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Subjt: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Query: PSNGKIKFNEDLVHPT
PSNGKIKFNEDLVHPT
Subjt: PSNGKIKFNEDLVHPT
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| A0A6M3RTH8 DNA-directed RNA polymerase subunit beta'' | 1.0e-58 | 96.55 | Show/hide |
Query: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
MGPRCIGIRNQDIGIGLINRFITFQTQPI PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Subjt: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Query: PSNGKIKFNEDLVHPT
PSNGKIKFNEDLVHPT
Subjt: PSNGKIKFNEDLVHPT
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| A0A6M3S448 DNA-directed RNA polymerase subunit beta'' | 1.0e-58 | 96.55 | Show/hide |
Query: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
MGPRCIGIRNQDIGIGLINRFITFQTQPI PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Subjt: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Query: PSNGKIKFNEDLVHPT
PSNGKIKFNEDLVHPT
Subjt: PSNGKIKFNEDLVHPT
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| Q33C48 DNA-directed RNA polymerase subunit beta'' | 9.7e-59 | 91.38 | Show/hide |
Query: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
MGPRCI RNQDIGIGL+NRFITF+ QPI PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RA
Subjt: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Query: PSNGKIKFNEDLVHPT
PSNGKIKFNEDLVHPT
Subjt: PSNGKIKFNEDLVHPT
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| Q3C1G9 DNA-directed RNA polymerase subunit beta'' | 9.7e-59 | 91.38 | Show/hide |
Query: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
MGPRCI RNQDIGIGL+NRFITF+ QPI PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RA
Subjt: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Query: PSNGKIKFNEDLVHPT
PSNGKIKFNEDLVHPT
Subjt: PSNGKIKFNEDLVHPT
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| Q49L08 DNA-directed RNA polymerase subunit beta'' | 1.5e-59 | 92.24 | Show/hide |
Query: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
MGPRCI IRNQDIGIGL+NRFITF+TQPI PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RA
Subjt: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Query: PSNGKIKFNEDLVHPT
PSNGKIKFN+DLVHPT
Subjt: PSNGKIKFNEDLVHPT
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| Q4VZP3 DNA-directed RNA polymerase subunit beta'' | 3.5e-61 | 95.69 | Show/hide |
Query: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
MGPRCIG+RNQDIGIGLINRFITFQTQPI PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Subjt: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Query: PSNGKIKFNEDLVHPT
PSNGKIKFNEDLVHPT
Subjt: PSNGKIKFNEDLVHPT
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| Q8S8Y1 DNA-directed RNA polymerase subunit beta'' | 9.7e-59 | 91.38 | Show/hide |
Query: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
MGPRCI RNQDIGIGL+NRFITF+ QPI PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RA
Subjt: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Query: PSNGKIKFNEDLVHPT
PSNGKIKFNEDLVHPT
Subjt: PSNGKIKFNEDLVHPT
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT3G57660.1 nuclear RNA polymerase A1 | 1.7e-05 | 51.28 | Show/hide |
Query: RSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGG
+S L + GE VG++A QS+GEP TQ+TL TFH G
Subjt: RSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGG
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| AT4G35800.1 RNA polymerase II large subunit | 8.2e-05 | 33.33 | Show/hide |
Query: LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGT---AEHIRAPSN--GKIKFNEDLVHPTPMSSNLKRNSREVTSLSDRPIPTHFTPFSTSVNNP
LV GE +G +A QSIGEP TQ+TL TFH GV +R N +IK V+ TP +S K ++ V + T + +P
Subjt: LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGT---AEHIRAPSN--GKIKFNEDLVHPTPMSSNLKRNSREVTSLSDRPIPTHFTPFSTSVNNP
Query: SPFPTNISTPF
P T I F
Subjt: SPFPTNISTPF
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| AT5G60040.1 nuclear RNA polymerase C1 | 2.6e-06 | 41.89 | Show/hide |
Query: VELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTPMSSNLKRNSREVTS
+E G A+G I QSIGEPGTQ+TL+TFH GV + + + P +I N TP+ S N E+TS
Subjt: VELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTPMSSNLKRNSREVTS
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| AT5G60040.2 nuclear RNA polymerase C1 | 2.6e-06 | 41.89 | Show/hide |
Query: VELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTPMSSNLKRNSREVTS
+E G A+G I QSIGEPGTQ+TL+TFH GV + + + P +I N TP+ S N E+TS
Subjt: VELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKIKFNEDLVHPTPMSSNLKRNSREVTS
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| ATCG00170.1 DNA-directed RNA polymerase family protein | 3.5e-56 | 86.21 | Show/hide |
Query: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
+G RC+ RNQD+GIGL+NR ITF TQ I PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RA
Subjt: MGPRCIGIRNQDIGIGLINRFITFQTQPIQ---PFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA
Query: PSNGKIKFNEDLVHPT
P NGKIKFNEDLVHPT
Subjt: PSNGKIKFNEDLVHPT
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