; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh01G012060 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh01G012060
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptiontranslation initiation factor IF-1, chloroplastic-like
Genome locationCma_Chr01:8744228..8744656
RNA-Seq ExpressionCmaCh01G012060
SyntenyCmaCh01G012060
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR004368 - Translation initiation factor IF-1
IPR006196 - RNA-binding domain, S1, IF1 type
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064332.1 translation initiation factor IF-1 [Cucumis melo var. makuwa]1.5e-5583.22Show/hide
Query:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLLQFPLLQ   RPP T LFP  KSHLSVVSI FP+SQFLH PSH P  FA MAKSPK+++SEQK SHEGSV+ESLPNGMFRV+LDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRST-KDPSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RS+ KD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRST-KDPSS

KAG6607876.1 Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.4e-6895.77Show/hide
Query:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLLQFPLLQFQCRPP T LFP  KSHLSVVSIPFPSSQFLHNPSHG ASF PMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS

XP_011654076.1 uncharacterized protein LOC101206284 [Cucumis sativus]3.3e-5580.99Show/hide
Query:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLLQFPLLQ   RPP T LFP  KSHLS+ SI FP+SQFLH PSH   +F  MAKSPK+++SEQK SHEGSV+ESLPNGMFRV+LDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RSTKD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS

XP_022940969.1 translation initiation factor IF-1, chloroplastic-like [Cucurbita moschata]2.6e-6895.07Show/hide
Query:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLLQFPLLQFQCRPP T LFP  KSH+SVVSIPFPSSQFLHNPSHGP SF PMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS

XP_022981301.1 translation initiation factor IF-1, chloroplastic-like [Cucurbita maxima]1.3e-72100Show/hide
Query:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS

TrEMBL top hitse value%identityAlignment
A0A0A0L4Q7 S1-like domain-containing protein1.6e-5580.99Show/hide
Query:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLLQFPLLQ   RPP T LFP  KSHLS+ SI FP+SQFLH PSH   +F  MAKSPK+++SEQK SHEGSV+ESLPNGMFRV+LDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RSTKD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS

A0A5A7V7J3 Translation initiation factor IF-17.1e-5683.22Show/hide
Query:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLLQFPLLQ   RPP T LFP  KSHLSVVSI FP+SQFLH PSH P  FA MAKSPK+++SEQK SHEGSV+ESLPNGMFRV+LDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRST-KDPSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RS+ KD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRST-KDPSS

A0A6J1FLU6 translation initiation factor IF-1, chloroplastic-like1.2e-6895.07Show/hide
Query:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLLQFPLLQFQCRPP T LFP  KSH+SVVSIPFPSSQFLHNPSHGP SF PMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS

A0A6J1IP00 uncharacterized protein LOC1114769475.1e-5481.02Show/hide
Query:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLL+FPLL    RPP T  FP  KSHLSVVSI FP+SQFL NPSHGPA FA MAK PKS+S+EQK+S+EGS++ESLPNGMFRV+LDNEDLILGYI 
Subjt:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRST
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR+RS+
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRST

A0A6J1IW62 translation initiation factor IF-1, chloroplastic-like6.4e-73100Show/hide
Query:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS

SwissProt top hitse value%identityAlignment
A0A370 Translation initiation factor IF-1, chloroplastic1.5e-2677.14Show/hide
Query:  EQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS
        EQK++HEG + ESLPNGMFRV+LDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST+GRI+YR R+
Subjt:  EQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS

A6MMP2 Translation initiation factor IF-1, chloroplastic1.1e-2678.57Show/hide
Query:  EQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS
        EQK  HEG +IESLPNGMFRV+LDNEDLILGY+SG+IR++F+RILPGDRV++EVSRYDSTKGRI+YR R+
Subjt:  EQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS

Q09G11 Translation initiation factor IF-1, chloroplastic1.5e-2678.57Show/hide
Query:  EQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS
        EQK+ HEG + ESLPNGMFRV+LDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST+GRI+YR RS
Subjt:  EQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS

Q94KR7 Translation initiation factor IF-1, chloroplastic2.7e-2874.71Show/hide
Query:  PASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRST
        PA  A  A  P  +S EQK+ HEG ++ESLPNGMFRV+LDNEDLILGYISGKIRKN+VRILPGDRV+VEV+RYDS+KGRIVYR RS+
Subjt:  PASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRST

Q94KR9 Translation initiation factor IF-1, chloroplastic2.3e-2773.33Show/hide
Query:  SSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKD
        S EQK++HEGS+ ESLPNGMFRV+LDN D++LGYISGKIRKNF+R+LPGDRV++EVSRYDS+KGRI+YR R  ++
Subjt:  SSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKD

Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein1.5e-2162.07Show/hide
Query:  GPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS
        G A+ +  AK P+ +    K   EG V ESLPNGMFRV L+N D ILGYI GKIRKNF+RILPGD+V+VE+S YDSTKGRI++R  S
Subjt:  GPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAATTCCAATGCCGGCCACCGTATACTTCCCTTTTTCCGACCACCAAATCGCATCTCTCGGTCGTCTCAATCCC
CTTTCCGAGTTCTCAATTCCTCCACAACCCTTCCCATGGTCCGGCGAGTTTCGCTCCAATGGCGAAATCTCCAAAAAGCGAGAGTTCAGAGCAGAAATTCAGTCACGAAG
GCTCGGTTATCGAATCTCTTCCCAACGGAATGTTCAGAGTTCAATTGGACAATGAAGACCTAATTCTTGGCTACATCTCGGGTAAGATTCGGAAGAATTTCGTGCGTATT
TTGCCTGGCGATAGGGTTAGGGTTGAAGTTAGCCGTTATGATTCTACTAAAGGCCGTATTGTCTATAGACATCGAAGTACTAAGGATCCATCTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAATTCCAATGCCGGCCACCGTATACTTCCCTTTTTCCGACCACCAAATCGCATCTCTCGGTCGTCTCAATCCC
CTTTCCGAGTTCTCAATTCCTCCACAACCCTTCCCATGGTCCGGCGAGTTTCGCTCCAATGGCGAAATCTCCAAAAAGCGAGAGTTCAGAGCAGAAATTCAGTCACGAAG
GCTCGGTTATCGAATCTCTTCCCAACGGAATGTTCAGAGTTCAATTGGACAATGAAGACCTAATTCTTGGCTACATCTCGGGTAAGATTCGGAAGAATTTCGTGCGTATT
TTGCCTGGCGATAGGGTTAGGGTTGAAGTTAGCCGTTATGATTCTACTAAAGGCCGTATTGTCTATAGACATCGAAGTACTAAGGATCCATCTTCATGA
Protein sequenceShow/hide protein sequence
MSSTNLLQFPLLQFQCRPPYTSLFPTTKSHLSVVSIPFPSSQFLHNPSHGPASFAPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRI
LPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS