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CmaCh01G012190 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh01G012190
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionpre-mRNA-splicing factor CWC22 homolog isoform X2
Genome locationCma_Chr01:8829829..8830821
RNA-Seq ExpressionCmaCh01G012190
SyntenyCmaCh01G012190
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607889.1 hypothetical protein SDJN03_01231, partial [Cucurbita argyrosperma subsp. sororia]5.4e-2691.3Show/hide
Query:  MGKLSSRNKGRSKTSSSQRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKKQSRDRQRRD
        MGK SSR KGRSKTSSSQRSRRKS SSRKLKSKKLRYRHDSPSGSD D E+STSLSSSSTEDDEKVGRSRSKMRKNAKKRAKK+S DRQRRD
Subjt:  MGKLSSRNKGRSKTSSSQRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKKQSRDRQRRD

KAG7037416.1 hypothetical protein SDJN02_01042 [Cucurbita argyrosperma subsp. argyrosperma]5.4e-2691.3Show/hide
Query:  MGKLSSRNKGRSKTSSSQRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKKQSRDRQRRD
        MGK SSR KGRSKTSSSQRSRRKS SSRKLKSKKLRYRHDSPSGSD D E+STSLSSSSTEDDEKVGRSRSKMRKNAKKRAKK+S DRQRRD
Subjt:  MGKLSSRNKGRSKTSSSQRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKKQSRDRQRRD

XP_022941380.1 pre-mRNA-splicing factor CWC22 homolog isoform X2 [Cucurbita moschata]1.1e-2389.13Show/hide
Query:  MGKLSSRNKGRSKTSSSQRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKKQSRDRQRRD
        MGK SSR KGRSKTSSSQRSRRKS SSRKLKS  +RYRHDSPSGSD D ESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKK+S DRQRRD
Subjt:  MGKLSSRNKGRSKTSSSQRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKKQSRDRQRRD

XP_023525531.1 uncharacterized protein LOC111789118 isoform X1 [Cucurbita pepo subsp. pepo]2.0e-2093.33Show/hide
Query:  QRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKKQSRDRQRRD
        +RSRRKS SSRKLKSKKLRYRHDSPSGSD DFESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKK+S DRQRRD
Subjt:  QRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKKQSRDRQRRD

XP_023525532.1 pre-mRNA-splicing factor CWC22 homolog isoform X2 [Cucurbita pepo subsp. pepo]2.0e-2093.33Show/hide
Query:  QRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKKQSRDRQRRD
        +RSRRKS SSRKLKSKKLRYRHDSPSGSD DFESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKK+S DRQRRD
Subjt:  QRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKKQSRDRQRRD

TrEMBL top hitse value%identityAlignment
A0A6J1CDR0 uncharacterized protein LOC1110106017.7e-1881.05Show/hide
Query:  MGKLSSRNKGRSKTSSSQRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKNA---KKRAKKQSRDRQRRD
        MGK  SR K RSKTSSSQRSRRK+ SSRKLKSKKLRYRHDSPS SD DFESSTSLSSSS+EDDEKVGRSRS   KNA   KKRAKK+SRD Q RD
Subjt:  MGKLSSRNKGRSKTSSSQRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKNA---KKRAKKQSRDRQRRD

A0A6J1FN60 pre-mRNA-splicing factor CWC22 homolog isoform X13.8e-1788Show/hide
Query:  QRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKKQSRDRQRRD
        +RSRRKS SSRKLKS  +RYRHDSPSGSD D ESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKK+S DRQRRD
Subjt:  QRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKKQSRDRQRRD

A0A6J1FTH5 pre-mRNA-splicing factor CWC22 homolog isoform X25.5e-2489.13Show/hide
Query:  MGKLSSRNKGRSKTSSSQRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKKQSRDRQRRD
        MGK SSR KGRSKTSSSQRSRRKS SSRKLKS  +RYRHDSPSGSD D ESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKK+S DRQRRD
Subjt:  MGKLSSRNKGRSKTSSSQRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKKQSRDRQRRD

A0A6J1IFS1 probable replication factor C subunit 1 isoform X21.7e-1773.79Show/hide
Query:  MGKL-SSRNKGRSKTSSSQRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKN---AKKRAKKQSRDRQRRDSPLI
        MGK  SSR K RSKTSSSQRSRRKS SSRKLKSKKLRYRHDSPS SD DFESSTS+SSSS+EDD+KV RSRSK RKN   +KKR+KKQS D Q R+    
Subjt:  MGKL-SSRNKGRSKTSSSQRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKN---AKKRAKKQSRDRQRRDSPLI

Query:  PER
        P +
Subjt:  PER

A0A6J1IGY0 uncharacterized protein LOC111476850 isoform X11.7e-1773.79Show/hide
Query:  MGKL-SSRNKGRSKTSSSQRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKN---AKKRAKKQSRDRQRRDSPLI
        MGK  SSR K RSKTSSSQRSRRKS SSRKLKSKKLRYRHDSPS SD DFESSTS+SSSS+EDD+KV RSRSK RKN   +KKR+KKQS D Q R+    
Subjt:  MGKL-SSRNKGRSKTSSSQRSRRKS-SSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKN---AKKRAKKQSRDRQRRDSPLI

Query:  PER
        P +
Subjt:  PER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAGCTCTCTTCTCGCAACAAGGGGCGTTCCAAGACTTCCTCATCCCAGAGAAGTAGGAGAAAGAGTAGTAGTAGGAAACTGAAGTCCAAGAAGTTGCGGTATCG
CCATGATTCTCCCTCTGGCTCTGACAAGGATTTTGAAAGCTCAACTTCATTGTCTTCTTCTAGCACGGAGGATGATGAAAAAGTGGGAAGATCTCGATCCAAGATGCGTA
AGAATGCTAAAAAGAGAGCCAAGAAGCAATCTCGTGACCGTCAAAGAAGGGATTCTCCCCTCATCCCAGAAAGAGGAAGCATTCAAAGAGAGACGAGTGTTGTGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATAATATTTTATAATTTAAAATTGTTTTGAAAAAAAAAAAAACTTAACTCAAAAGTGGACACGAATAAAGTCGGAGAAAGAGTGTGAAGGACAGCGGTTGTCAACGAACA
GAGAAACGGACCTCCTCCAGTTTGCGATGAGATCCGTCGGAAACAGAGCAAACCCTTCATCAACCTCCAATCCCTTCACTTTTCTAATTTCCCAACCCTAATTCCCTCAT
TCAATTTAATTCTTCTCTTTTTGCTTTCAATTTCCCCTTTTTTATCTGTTTTTTCGTTCTTCTCCCTGGTAATTGCAGGTTAAATCCCGATGGGAAAGCTCTCTTCTCGC
AACAAGGGGCGTTCCAAGACTTCCTCATCCCAGAGAAGTAGGAGAAAGAGTAGTAGTAGGAAACTGAAGTCCAAGAAGTTGCGGTATCGCCATGATTCTCCCTCTGGCTC
TGACAAGGATTTTGAAAGCTCAACTTCATTGTCTTCTTCTAGCACGGAGGATGATGAAAAAGTGGGAAGATCTCGATCCAAGATGCGTAAGAATGCTAAAAAGAGAGCCA
AGAAGCAATCTCGTGACCGTCAAAGAAGGGATTCTCCCCTCATCCCAGAAAGAGGAAGCATTCAAAGAGAGACGAGTGTTGTGAGATGA
Protein sequenceShow/hide protein sequence
MGKLSSRNKGRSKTSSSQRSRRKSSSRKLKSKKLRYRHDSPSGSDKDFESSTSLSSSSTEDDEKVGRSRSKMRKNAKKRAKKQSRDRQRRDSPLIPERGSIQRETSVVR