; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh01G012680 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh01G012680
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description50S ribosomal protein L13
Genome locationCma_Chr01:9136742..9139310
RNA-Seq ExpressionCmaCh01G012680
SyntenyCmaCh01G012680
Gene Ontology termsGO:0017148 - negative regulation of translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005822 - Ribosomal protein L13
IPR005823 - Ribosomal protein L13, bacterial-type
IPR023563 - Ribosomal protein L13, conserved site
IPR036899 - Ribosomal protein L13 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607943.1 50S ribosomal protein L13, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.8e-13497.98Show/hide
Query:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP
        MAMLCASSSTATFSLHST NNANASNRAIPR SLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMF+GDEIDGPDIWN TWYP
Subjt:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP

Query:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH
        KA DHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH
Subjt:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH

Query:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
        AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
Subjt:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER

KAG7037458.1 50S ribosomal protein L13, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]2.3e-13397.58Show/hide
Query:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP
        MAMLCASSSTATFSLHST NNANASNRA+PR SLVAGFPL QSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWN TWYP
Subjt:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP

Query:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH
        KA DHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH
Subjt:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH

Query:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
        AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
Subjt:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER

XP_022941245.1 50S ribosomal protein L13, chloroplastic-like [Cucurbita moschata]9.5e-13598.39Show/hide
Query:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP
        MAMLCASSSTATFSLHST NNANASNRAIPR SLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWN TWYP
Subjt:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP

Query:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH
        KA DHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH
Subjt:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH

Query:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
        AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
Subjt:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER

XP_022981281.1 50S ribosomal protein L13, chloroplastic-like [Cucurbita maxima]9.2e-138100Show/hide
Query:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP
        MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP
Subjt:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP

Query:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH
        KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH
Subjt:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH

Query:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
        AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
Subjt:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER

XP_023524699.1 50S ribosomal protein L13, chloroplastic-like [Cucurbita pepo subsp. pepo]2.6e-13296.77Show/hide
Query:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP
        MAMLCASSSTATFSLHST NN NASNRA+PR SLVAGFPL QSKSSFLQTQTTITLTSKPKSSV QVRAQELDRVPLEQRWMFEGDEIDGPDIWN TWYP
Subjt:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP

Query:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH
        KA DHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH
Subjt:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH

Query:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
        AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
Subjt:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER

TrEMBL top hitse value%identityAlignment
A0A6J1C1B3 50S ribosomal protein L13, chloroplastic2.1e-12491.13Show/hide
Query:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP
        MAMLCASSSTATF LHST NN   SNR IPRKSLVAGFPLP SKSSFLQTQT ITL SKP+SSV Q+RAQELDRVPLEQRWMFEGDE+DGPDIWN TWYP
Subjt:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP

Query:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH
        KA DHVNTEK WYVVDATDKILGRLASTIA HIRGK+LPTYTPSVDMGAFVIVVNAEKVAVSGRKRT+KLYRRHSGRPGGM VETF+QLQQRIPERIIEH
Subjt:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH

Query:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
        AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIRDKRINKER
Subjt:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER

A0A6J1F6Z3 50S ribosomal protein L13, chloroplastic-like5.6e-12591.53Show/hide
Query:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP
        MAMLCASSST TF +HST NN + SNR IPRKS V GFPLPQSKS  L TQTTITL S+ KSS  QVRAQELDRVPLEQRWMFEGDE+DGPDIWN TWYP
Subjt:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP

Query:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH
        KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH
Subjt:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH

Query:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
        AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIRDKRINKER
Subjt:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER

A0A6J1FT16 50S ribosomal protein L13, chloroplastic-like4.6e-13598.39Show/hide
Query:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP
        MAMLCASSSTATFSLHST NNANASNRAIPR SLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWN TWYP
Subjt:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP

Query:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH
        KA DHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH
Subjt:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH

Query:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
        AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
Subjt:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER

A0A6J1IPT4 50S ribosomal protein L13, chloroplastic-like1.8e-12390.73Show/hide
Query:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP
        MAMLCASSST TF +HST NN + SNR I RKS V GF LPQSKS  L TQTTITL S+ KSS  QVRAQELDRVPLEQRWMFEGDE+DGPDIWN TWYP
Subjt:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP

Query:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH
        KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH
Subjt:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH

Query:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
        AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIRDKRINKER
Subjt:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER

A0A6J1IW42 50S ribosomal protein L13, chloroplastic-like4.4e-138100Show/hide
Query:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP
        MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP
Subjt:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYP

Query:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH
        KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH
Subjt:  KAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEH

Query:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
        AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
Subjt:  AVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER

SwissProt top hitse value%identityAlignment
B1WQT8 50S ribosomal protein L133.7e-4968.7Show/hide
Query:  EKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPK
        ++ WYV+DATD+ LGRLA  +A  +RGK+ PTYTP +D G FVI++NA+KVAV+GRK TQKLYRRHSGRPGGM +ETF++LQQRIPERIIE AV+GMLPK
Subjt:  EKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPK

Query:  GRLGRALFNHLKVYKGPDHPHEAQKPVDLPI
          LGR LF  LKVY GP+HPH+AQKP +L +
Subjt:  GRLGRALFNHLKVYKGPDHPHEAQKPVDLPI

B8HMT1 50S ribosomal protein L131.3e-4966.44Show/hide
Query:  NNTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIP
        N T+ P      + E  WYVVDAT++ LGRLA+ IA  +RGK  P YTPS+D G FVIVVNAEKVAV+G+KRTQK+YRRHSGRPGGM  ETF +LQ R+P
Subjt:  NNTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIP

Query:  ERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR
        ERIIEHAV+GMLPK  LGR LF  LKVY GPDHPH+AQKP  L ++
Subjt:  ERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR

P12629 50S ribosomal protein L13, chloroplastic4.1e-8063.1Show/hide
Query:  MLCASSSTATFSLHSTPNNANASN------RAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNN
        M CASS   TF    T  +   +N       + PR ++ A   +   KS+   T+ T     + K +V +  A  +  VPL+QRWMF  +E  GPDIWN 
Subjt:  MLCASSSTATFSLHSTPNNANASN------RAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNN

Query:  TWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPER
        TWYPK+ DHV T+K WYVVDATD ILGR+ASTIA HIRGK+L +YTPSVDMGAFVIVVNA+KVAVSG+KRTQKLYRRHSGRPGG+  ETFDQLQ+RIPER
Subjt:  TWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPER

Query:  IIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
        IIEHAVRGMLPKGRLGR LFNHLKVYKG +HPH+AQ+P+DLP+RDKRI  E+
Subjt:  IIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER

Q3MF94 50S ribosomal protein L132.8e-4972.52Show/hide
Query:  EKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPK
        E+ WYVVDATDK LGRLAS IA  +RGK+   YTP +D G FVIVVNAEKVAV+G+KRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK
Subjt:  EKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPK

Query:  GRLGRALFNHLKVYKGPDHPHEAQKPVDLPI
          LG+ LF  LKVY GP HPH+AQKP +L I
Subjt:  GRLGRALFNHLKVYKGPDHPHEAQKPVDLPI

Q9SYL9 50S ribosomal protein L13, chloroplastic2.4e-8867.59Show/hide
Query:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQ-----ELDRVPLEQRWMFEGDEIDGPDIWN
        MA+LC SSST   S  S  ++ +       RKS   GF L    ++  +    + + +  K  + QV+ +         VP  QRWMF+ +E +GPDIWN
Subjt:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQ-----ELDRVPLEQRWMFEGDEIDGPDIWN

Query:  NTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPE
         TWYPKA DHVNT+KPW+VVDATDKILGRLASTIANHIRGK+L +YTPSVDMGAFVIVVNAEKVAVSG+KR QKLYRRHSGRPGGMTVETFDQLQQRIPE
Subjt:  NTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPE

Query:  RIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
        RI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+DLPIRDKRI  ++
Subjt:  RIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER

Arabidopsis top hitse value%identityAlignment
AT1G78630.1 Ribosomal protein L13 family protein1.7e-8967.59Show/hide
Query:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQ-----ELDRVPLEQRWMFEGDEIDGPDIWN
        MA+LC SSST   S  S  ++ +       RKS   GF L    ++  +    + + +  K  + QV+ +         VP  QRWMF+ +E +GPDIWN
Subjt:  MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQ-----ELDRVPLEQRWMFEGDEIDGPDIWN

Query:  NTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPE
         TWYPKA DHVNT+KPW+VVDATDKILGRLASTIANHIRGK+L +YTPSVDMGAFVIVVNAEKVAVSG+KR QKLYRRHSGRPGGMTVETFDQLQQRIPE
Subjt:  NTWYPKAVDHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPE

Query:  RIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER
        RI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+DLPIRDKRI  ++
Subjt:  RIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER

AT3G01790.1 Ribosomal protein L13 family protein2.0e-1837.6Show/hide
Query:  WYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRL
        W V DA  ++LGRLAS I+  ++ KD PTY P+ D G   IV+NA+++  +GRK T K YR H+G  G +   +      + P  +I  AV  MLP   L
Subjt:  WYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRL

Query:  GRALFNHLKVYKGPDHPHEAQKPVD
               L++++G +HP    KP++
Subjt:  GRALFNHLKVYKGPDHPHEAQKPVD

AT3G01790.2 Ribosomal protein L13 family protein2.0e-1837.6Show/hide
Query:  WYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRL
        W V DA  ++LGRLAS I+  ++ KD PTY P+ D G   IV+NA+++  +GRK T K YR H+G  G +   +      + P  +I  AV  MLP   L
Subjt:  WYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRL

Query:  GRALFNHLKVYKGPDHPHEAQKPVD
               L++++G +HP    KP++
Subjt:  GRALFNHLKVYKGPDHPHEAQKPVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATGCTCTGTGCTTCCTCATCTACAGCCACTTTTTCTTTACATTCCACTCCTAACAATGCGAACGCAAGTAACAGAGCCATTCCTAGAAAGTCACTCGTT
GCTGGATTTCCTCTCCCTCAATCAAAATCTTCTTTTCTTCAAACTCAGACTACGATTACTCTAACCTCCAAGCCGAAGAGTTCTGTCTTTCAAGTGCGAGCTCAG
GAGCTGGATCGTGTCCCTTTGGAGCAGCGGTGGATGTTCGAGGGCGACGAGATTGACGGCCCTGATATATGGAATAATACATGGTACCCGAAGGCTGTTGATCAT
GTGAACACTGAAAAACCTTGGTATGTGGTTGATGCTACTGATAAGATTTTGGGAAGATTAGCTTCAACCATTGCCAATCATATCCGAGGGAAAGATTTACCAACC
TACACTCCTAGTGTGGATATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCCGTGTCTGGTAGAAAGAGGACACAAAAACTGTACAGGAGGCATTCG
GGGCGGCCGGGTGGCATGACAGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGCGGTATGCTTCCGAAGGGGAGG
CTTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGAGGCACAAAAGCCAGTTGATCTGCCAATTAGGGACAAAAGGATAAAC
AAGGAAAGATAG
mRNA sequenceShow/hide mRNA sequence
CTTACCAAAAACCAAAGCAAGGCGCCACTTGCATTCACAAAAGGCAGAGTCTTATCCACACTCGACAGCGGAAATTCCCCAACTGAAAGAGCAACAGAGCTACAA
TGGCGATGCTCTGTGCTTCCTCATCTACAGCCACTTTTTCTTTACATTCCACTCCTAACAATGCGAACGCAAGTAACAGAGCCATTCCTAGAAAGTCACTCGTTG
CTGGATTTCCTCTCCCTCAATCAAAATCTTCTTTTCTTCAAACTCAGACTACGATTACTCTAACCTCCAAGCCGAAGAGTTCTGTCTTTCAAGTGCGAGCTCAGG
AGCTGGATCGTGTCCCTTTGGAGCAGCGGTGGATGTTCGAGGGCGACGAGATTGACGGCCCTGATATATGGAATAATACATGGTACCCGAAGGCTGTTGATCATG
TGAACACTGAAAAACCTTGGTATGTGGTTGATGCTACTGATAAGATTTTGGGAAGATTAGCTTCAACCATTGCCAATCATATCCGAGGGAAAGATTTACCAACCT
ACACTCCTAGTGTGGATATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTTGCCGTGTCTGGTAGAAAGAGGACACAAAAACTGTACAGGAGGCATTCGG
GGCGGCCGGGTGGCATGACAGTAGAAACTTTTGACCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGCGGTATGCTTCCGAAGGGGAGGC
TTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGAGGCACAAAAGCCAGTTGATCTGCCAATTAGGGACAAAAGGATAAACA
AGGAAAGATAGTATGAACTACAAAGAAGCAAAGCTTTCTTGCTCTTGGATTCCAATGTTCATAGACTCTGAGTTAGAGTTTTCATGCTTCAGCCCAATTTGACGT
TAGTATTTGAGTTGTAATTTCATTCCAAGTTCTAGTCTTCTCTCTGATATCATGATGCTTGGCCTGAGTGGCATTTGAGAGTTATTTATTCACAAGTGGAAATCT
TTAAATCTTGTCTGGTTGAAGGTTGTGATTATGATAATTTTGATCGATTGATTTCTCCATCTAGAGAGTTTTGACTTTCTCTCAAAGTTTCAAAACACGTCCATT
AGAGAGAGATTCTCATACCCTTATGAATGTTTTTGTTCTCCTCTACAATCGATGTAAGATCTCACACCGCACTTTAAGTTTCACTTCATTTCAGTCATCAAAGTT
CAAGAAACTATTGCTACAGAACAAGC
Protein sequenceShow/hide protein sequence
MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKPKSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYPKAVDH
VNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGR
LGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER