; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh01G012990 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh01G012990
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionBiogenesis of lysosome-related organelles complex 1 subunit 7
Genome locationCma_Chr01:9302287..9305539
RNA-Seq ExpressionCmaCh01G012990
SyntenyCmaCh01G012990
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0031083 - BLOC-1 complex (cellular component)
InterPro domainsIPR017246 - Snapin
IPR028119 - Snapin/Pallidin/Snn1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022940121.1 uncharacterized protein LOC111445840 isoform X1 [Cucurbita moschata]1.2e-6994.23Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF
        MHSLEKVHDDSANKDSKVSAELEPSISPNGD E+ENDIA MNLG+SNALANGLSSML NIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF

Query:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQNR
        IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDR ISMSNLPALETEEERE+ +NR
Subjt:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQNR
XP_022940122.1 uncharacterized protein LOC111445840 isoform X2 [Cucurbita moschata]5.8e-6488.39Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF
        MHSLEKVHDDSANKDSKVSAELEPSISPNGD E+ENDIA MNLG+SNALANGLSSML NIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF

Query:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQN
        IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDR ISMSNLP + + +   +  N
Subjt:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQN
XP_022976873.1 uncharacterized protein LOC111477110 [Cucurbita maxima]2.1e-5080.99Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF
        MHS EKV DD AN+DS  S ELE SIS NG+ ++END+A  NL NSNALANGLSSML NI+RDFDSKADDTLKSQSQLS SLDR+T+ELDQLLEDAPFPF
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF

Query:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLP
        IMQHA RISSVRKRVLSLNSILRS+QRR+DNIDRAISM N P
Subjt:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLP
XP_022981117.1 uncharacterized protein LOC111480361 [Cucurbita maxima]3.4e-80100Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF
        MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF

Query:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQNRCKLTGGGQ
        IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQNRCKLTGGGQ
Subjt:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQNRCKLTGGGQ
XP_023523877.1 uncharacterized protein LOC111787988 [Cucurbita pepo subsp. pepo]5.8e-6488.39Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF
        MHSLEKVHDDSANKDSKVSAELEPSISPNGD E+EN+IA MNLG+SNALANGLSSML NIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF

Query:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQN
        IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLP + + +   +  N
Subjt:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQN
TrEMBL top hitse value%identityAlignment
A0A6J1FEP4 Biogenesis of lysosome-related organelles complex 1 subunit 76.7e-5074.84Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF
        MHS EKV DD AN+DS VS ELE SIS NGD ++END+A  NL NSNALANGLSSML NI+RDFDSKADDTLKSQSQLS SLDR+T+ELDQLLE APFPF
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF

Query:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQN
        IMQHA RISSVRKRVLSLNSIL S+QRR+DNIDRAISM N P   + +   + Q+
Subjt:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQN
A0A6J1FHK0 Biogenesis of lysosome-related organelles complex 1 subunit 75.8e-7094.23Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF
        MHSLEKVHDDSANKDSKVSAELEPSISPNGD E+ENDIA MNLG+SNALANGLSSML NIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF

Query:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQNR
        IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDR ISMSNLPALETEEERE+ +NR
Subjt:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQNR
A0A6J1FIR1 Biogenesis of lysosome-related organelles complex 1 subunit 72.8e-6488.39Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF
        MHSLEKVHDDSANKDSKVSAELEPSISPNGD E+ENDIA MNLG+SNALANGLSSML NIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF

Query:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQN
        IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDR ISMSNLP + + +   +  N
Subjt:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQN
A0A6J1IKP2 Biogenesis of lysosome-related organelles complex 1 subunit 71.0e-5080.99Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF
        MHS EKV DD AN+DS  S ELE SIS NG+ ++END+A  NL NSNALANGLSSML NI+RDFDSKADDTLKSQSQLS SLDR+T+ELDQLLEDAPFPF
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF

Query:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLP
        IMQHA RISSVRKRVLSLNSILRS+QRR+DNIDRAISM N P
Subjt:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLP
A0A6J1J178 Biogenesis of lysosome-related organelles complex 1 subunit 71.6e-80100Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF
        MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPF

Query:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQNRCKLTGGGQ
        IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQNRCKLTGGGQ
Subjt:  IMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQNRCKLTGGGQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G79070.1 SNARE-associated protein-related2.7e-2765.96Show/hide
Query:  GNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAIS
        G   A+A GLS+ML+++++DFDSKA DTL SQ +LS SLDRL  ELDQLLE+AP PFI+QHA RISSV++RV SLN +L+SVQRR+DNID  +S
Subjt:  GNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRAIS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACAGTCTGGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGATTTCGAGAAAGAAAATGA
TATCGCAAAGATGAATTTGGGAAACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTAAGAACATCATGAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAA
GCCAAAGCCAGCTTTCATTTTCCCTTGACCGACTTACTTCAGAACTGGATCAATTACTTGAAGATGCTCCTTTTCCATTCATCATGCAGCATGCCTTGAGGATTTCTAGT
GTAAGAAAGAGAGTGTTGTCTCTAAATTCCATCTTAAGATCCGTACAACGAAGAGTAGATAACATAGATCGGGCGATCTCGATGAGTAATTTACCAGCTCTGGAGACGGA
AGAAGAGAGAGAGAAACACCAAAACAGATGCAAGTTGACTGGTGGAGGGCAGTAG
mRNA sequenceShow/hide mRNA sequence
CAGGAATCTTTAAGCTGATCTCCGTTTCCGACGATTCCACCGGCGACGACGAACAGTTCGTGAAGTTTGGCGAGACTGTGAACTGCGAAATTGCAAGGGATGCACAGTCT
GGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGATTTCGAGAAAGAAAATGATATCGCAAAGA
TGAATTTGGGAAACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTAAGAACATCATGAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAAGCCAAAGCCAG
CTTTCATTTTCCCTTGACCGACTTACTTCAGAACTGGATCAATTACTTGAAGATGCTCCTTTTCCATTCATCATGCAGCATGCCTTGAGGATTTCTAGTGTAAGAAAGAG
AGTGTTGTCTCTAAATTCCATCTTAAGATCCGTACAACGAAGAGTAGATAACATAGATCGGGCGATCTCGATGAGTAATTTACCAGCTCTGGAGACGGAAGAAGAGAGAG
AGAAACACCAAAACAGATGCAAGTTGACTGGTGGAGGGCAGTAGGGTTTGACAATGGGGAAAAAGATTGATTTTGGAACTTAGTCGAGGAAATATGGTATTTACCTTTTT
AAAATGCTGCGTATGAAGAATGAAGTAAAATTTTGGAGTGACTCCAAATGGAAGTTTATGTATGAACTCTCATAATGTCACTAGATACTTAAGGTCCCTAGATACTTAAG
GTCCGAGTGGACTATTTAAGAGATATTACTCTACTAGAATCAGTGCCTTGTGTGTTTGTGTGTCCGGGTCACCTTGCGTGTATCTTGACTAATCTCATGGCACAACCATC
TGACTGCACTACATTTGGTTGCCAAGGAAACTCTTAATATGTTAAATGCTAGGTAGATGACTACCATGATCGGAACTATATATATATATATATATTCTCTCCTCTCTTTT
CTTTTTTTGAAGGAGTGGACACGAAGCGGCGTGCCAACAAGGACGGTATAAGAGTGTGGAAACCTTAGCCTAAATGATCGAGTCATAATAAAG
Protein sequenceShow/hide protein sequence
MHSLEKVHDDSANKDSKVSAELEPSISPNGDFEKENDIAKMNLGNSNALANGLSSMLKNIMRDFDSKADDTLKSQSQLSFSLDRLTSELDQLLEDAPFPFIMQHALRISS
VRKRVLSLNSILRSVQRRVDNIDRAISMSNLPALETEEEREKHQNRCKLTGGGQ