; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh01G013040 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh01G013040
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionObg-like ATPase 1
Genome locationCma_Chr01:9322797..9324758
RNA-Seq ExpressionCmaCh01G013040
SyntenyCmaCh01G013040
Gene Ontology termsGO:0005737 - cytoplasm (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0005525 - GTP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
GO:0043023 - ribosomal large subunit binding (molecular function)
InterPro domainsIPR006073 - GTP binding domain
IPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR031167 - OBG-type guanine nucleotide-binding (G) domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7037484.1 Ribosome-binding ATPase YchF, partial [Cucurbita argyrosperma subsp. argyrosperma]4.9e-4978.38Show/hide
Query:  RSHYSVSAFPSKSLLQLSRTL--GASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQL
        RSHYSVSAFP + +LQL+RTL  GASH SHVTVVGRRFSDT K STSLRAGIVGLINVGKSTLFN VVENGKAQAAK PFCTIEPNVGVVAVPDPRLHQL
Subjt:  RSHYSVSAFPSKSLLQLSRTL--GASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQL

Query:  SDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVEVHTS
        SDLSKSIRAVPASIE  +                NFLSHV EVEVHTS
Subjt:  SDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVEVHTS

XP_022981111.1 uncharacterized protein LOC111480358 isoform X1 [Cucurbita maxima]1.7e-73100Show/hide
Query:  MARSHYSVSAFPSKSLLQLSRTLGASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQL
        MARSHYSVSAFPSKSLLQLSRTLGASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQL
Subjt:  MARSHYSVSAFPSKSLLQLSRTLGASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQL

Query:  SDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVEVHTS
        SDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVEVHTS
Subjt:  SDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVEVHTS

XP_022981112.1 uncharacterized protein LOC111480358 isoform X2 [Cucurbita maxima]7.3e-77100Show/hide
Query:  MARSHYSVSAFPSKSLLQLSRTLGASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQL
        MARSHYSVSAFPSKSLLQLSRTLGASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQL
Subjt:  MARSHYSVSAFPSKSLLQLSRTLGASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQL

Query:  SDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVEVHTSGCALF
        SDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVEVHTSGCALF
Subjt:  SDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVEVHTSGCALF

XP_038898079.1 ribosome-binding ATPase YchF isoform X2 [Benincasa hispida]1.3e-4678.52Show/hide
Query:  PSKSLLQLSRTL--GASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRA
        PSKS    + +L   ASH  HV VVGRRFS  SKIS SLRAGIVGL NVGKSTLFNAVVENGKAQAA  PFCTIEPNVGVVAVPDPRLH+LSDLSKS RA
Subjt:  PSKSLLQLSRTL--GASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRA

Query:  VPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVE
        VPASIEFVD +GLV G SQGEGLGN FLSH+ EV+
Subjt:  VPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVE

XP_038898080.1 ribosome-binding ATPase YchF isoform X3 [Benincasa hispida]1.3e-4678.52Show/hide
Query:  PSKSLLQLSRTL--GASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRA
        PSKS    + +L   ASH  HV VVGRRFS  SKIS SLRAGIVGL NVGKSTLFNAVVENGKAQAA  PFCTIEPNVGVVAVPDPRLH+LSDLSKS RA
Subjt:  PSKSLLQLSRTL--GASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRA

Query:  VPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVE
        VPASIEFVD +GLV G SQGEGLGN FLSH+ EV+
Subjt:  VPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVE

TrEMBL top hitse value%identityAlignment
A0A5A7UAY0 Ribosome-binding ATPase YchF2.7e-4576.3Show/hide
Query:  PSKSLLQLSRTLGA--SHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRA
        PSKS    + +L +  SH  HV V+GRRFS +SKIS SLRAGIVGL NVGKSTLFNAVVENGKAQAA  PFCTIEPNVGVVAVPDPRLH+LSDLSKS RA
Subjt:  PSKSLLQLSRTLGA--SHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRA

Query:  VPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVE
        V ASIEFVD +GLV G SQGEGLGN FLSH+ EV+
Subjt:  VPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVE

A0A6J1CLP3 Obg-like ATPase 19.4e-4682.5Show/hide
Query:  ASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVN
        ASH   V VVGRRFS  SKIS SLRAGIVGL NVGKSTLFNAVVENGKAQAA  PFCTIEPNVG+VAVPDPRLH+LSDLSKS RAVPASIEFVD +GLV 
Subjt:  ASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVN

Query:  GGSQGEGLGNNFLSHVHEVE
        G SQGEGLGN FLSH+ EV+
Subjt:  GGSQGEGLGNNFLSHVHEVE

A0A6J1FB19 Obg-like ATPase 15.5e-4683.33Show/hide
Query:  ASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVN
        ASH   V VVGRRFS +SKIS SLRAGIVGL NVGKSTLFNAVVENGKAQAA  PFCTIEPNVGVVAVPDPRLH+LSDLSKS RAVPASIEFVD +GLV 
Subjt:  ASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVN

Query:  GGSQGEGLGNNFLSHVHEVE
        G SQGEGLGN FLSH+ EV+
Subjt:  GGSQGEGLGNNFLSHVHEVE

A0A6J1IVM0 uncharacterized protein LOC111480358 isoform X18.1e-74100Show/hide
Query:  MARSHYSVSAFPSKSLLQLSRTLGASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQL
        MARSHYSVSAFPSKSLLQLSRTLGASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQL
Subjt:  MARSHYSVSAFPSKSLLQLSRTLGASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQL

Query:  SDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVEVHTS
        SDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVEVHTS
Subjt:  SDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVEVHTS

A0A6J1J126 uncharacterized protein LOC111480358 isoform X23.5e-77100Show/hide
Query:  MARSHYSVSAFPSKSLLQLSRTLGASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQL
        MARSHYSVSAFPSKSLLQLSRTLGASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQL
Subjt:  MARSHYSVSAFPSKSLLQLSRTLGASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQL

Query:  SDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVEVHTSGCALF
        SDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVEVHTSGCALF
Subjt:  SDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVEVHTSGCALF

SwissProt top hitse value%identityAlignment
P0ABU2 Ribosome-binding ATPase YchF7.9e-2660.42Show/hide
Query:  RAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVE
        + GIVGL NVGKSTLFNA+ + G  +AA  PFCTIEPN GVV +PDPRL QL+++ K  R +P ++EFVD +GLV G S+GEGLGN FL+++ E E
Subjt:  RAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVE

P0ABU3 Ribosome-binding ATPase YchF7.9e-2660.42Show/hide
Query:  RAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVE
        + GIVGL NVGKSTLFNA+ + G  +AA  PFCTIEPN GVV +PDPRL QL+++ K  R +P ++EFVD +GLV G S+GEGLGN FL+++ E E
Subjt:  RAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVE

P0ABU4 Ribosome-binding ATPase YchF7.9e-2660.42Show/hide
Query:  RAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVE
        + GIVGL NVGKSTLFNA+ + G  +AA  PFCTIEPN GVV +PDPRL QL+++ K  R +P ++EFVD +GLV G S+GEGLGN FL+++ E E
Subjt:  RAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVE

P37518 Ribosome-binding ATPase YchF6.1e-2658.16Show/hide
Query:  SLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVE
        +L AGIVGL NVGKSTLFNA+ + G A++A  PFCTI+PNVG+V VPD RL +L++L    + VP + EF D +G+V G S+GEGLGN FLSH+ +V+
Subjt:  SLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVE

Q9CP90 Ribosome-binding ATPase YchF1.5e-2458.33Show/hide
Query:  RAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVE
        + GIVGL NVGKSTLFNA+ + G  +AA  PFCTIEPN GVV +PDPRL  L+++ K  R +P ++EFVD +GLV G S+GEGLGN FL+++ E +
Subjt:  RAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVE

Arabidopsis top hitse value%identityAlignment
AT1G07615.1 GTP-binding protein Obg/CgtA3.8e-0733.68Show/hide
Query:  GIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVEV
        G+VG+ N GKSTL  A +   K +     F T+ PN+G V           D S ++  +P         GL+ G  Q  GLG+NFL H+   +V
Subjt:  GIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVEV

AT1G30580.1 GTP binding8.7e-2049.02Show/hide
Query:  KISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHE
        + S+ L+ GIVGL NVGKSTLFN + +     A   PFCTIEPN   V +PD R   L    K    +PA +E  D +GLV G  +G+GLGNNFLSH+  
Subjt:  KISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHE

Query:  VE
        V+
Subjt:  VE

AT1G56050.1 GTP-binding protein-related5.8e-4065.25Show/hide
Query:  SVSAFPSKSLL---QLSRTLGASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDL
        +++  PSKSLL   QL  +  +  +  +T+  R FS  SK+S SL+AGIVGL NVGKSTLFNAVVENGKAQAA  PFCTIEPNVG+VAVPD RL  LS L
Subjt:  SVSAFPSKSLL---QLSRTLGASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDL

Query:  SKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVE
        S S + VPASIEFVD +GLV G SQGEGLGN FLSH+ EV+
Subjt:  SKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVE

AT5G18570.1 GTP1/OBG family protein3.6e-0534.83Show/hide
Query:  GIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSH
        GIVG  N GKSTL  +V+   +   A  PF T+ PN+GVV+                    +++   D  GL+ G  +G GLG+ FL H
Subjt:  GIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSKSIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCGCTCACATTATTCCGTCTCTGCTTTTCCTTCGAAATCCCTGCTTCAGTTATCTCGCACTCTAGGAGCTTCTCATTTAAGCCATGTTACAGTGGTTGGC
CGTCGTTTCTCTGATACATCCAAGATCAGTACGAGCCTCAGAGCCGGCATCGTTGGCCTCATCAATGTTGGAAAATCAACTCTCTTCAATGCCGTCGTCGAAAAT
GGCAAGGCTCAAGCAGCTAAAGTTCCTTTCTGTACAATAGAGCCCAACGTAGGAGTAGTTGCAGTTCCAGATCCTCGCCTGCATCAACTTTCTGATCTCAGCAAG
TCTATACGAGCGGTCCCAGCTTCCATAGAGTTTGTAGATACTTCTGGGTTAGTGAATGGTGGCAGTCAAGGAGAAGGATTGGGAAATAACTTTTTATCCCATGTT
CATGAGGTGGAGGTCCATACTTCAGGCTGTGCGCTGTTTTGA
mRNA sequenceShow/hide mRNA sequence
AACGGATTGTCTGTTTTGGCTTGGTTTGGAGCTCAGGTGGCCACAGCCATGGCGCGCTCACATTATTCCGTCTCTGCTTTTCCTTCGAAATCCCTGCTTCAGTTA
TCTCGCACTCTAGGAGCTTCTCATTTAAGCCATGTTACAGTGGTTGGCCGTCGTTTCTCTGATACATCCAAGATCAGTACGAGCCTCAGAGCCGGCATCGTTGGC
CTCATCAATGTTGGAAAATCAACTCTCTTCAATGCCGTCGTCGAAAATGGCAAGGCTCAAGCAGCTAAAGTTCCTTTCTGTACAATAGAGCCCAACGTAGGAGTA
GTTGCAGTTCCAGATCCTCGCCTGCATCAACTTTCTGATCTCAGCAAGTCTATACGAGCGGTCCCAGCTTCCATAGAGTTTGTAGATACTTCTGGGTTAGTGAAT
GGTGGCAGTCAAGGAGAAGGATTGGGAAATAACTTTTTATCCCATGTTCATGAGGTGGAGGTCCATACTTCAGGCTGTGCGCTGTTTTGAGGATAACGACATTGT
TCACGTGAATGGGAAAATTGATCCAAAAACTGGTATTGATTTGATTAACTTAGAGCTTTATTTTTCAGATCTGGACCAGGTAACATCACTGAAACCTTTTCTATA
TTCATACGCATGTTTTGCACCTTTTAGTATGCAGGGTTACAATCCTTTGTTATTATCTTGCTACTTTTTATTTAATTGTAC
Protein sequenceShow/hide protein sequence
MARSHYSVSAFPSKSLLQLSRTLGASHLSHVTVVGRRFSDTSKISTSLRAGIVGLINVGKSTLFNAVVENGKAQAAKVPFCTIEPNVGVVAVPDPRLHQLSDLSK
SIRAVPASIEFVDTSGLVNGGSQGEGLGNNFLSHVHEVEVHTSGCALF