; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh01G013460 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh01G013460
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptioncarbon catabolite repressor protein 4 homolog 4
Genome locationCma_Chr01:9617818..9620162
RNA-Seq ExpressionCmaCh01G013460
SyntenyCmaCh01G013460
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052275.1 carbon catabolite repressor protein 4-like protein 4 [Cucumis melo var. makuwa]1.2e-3354.04Show/hide
Query:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL---------------LVTSIQTLG-------------TSVYAAVLGSEPSFTY
        I+ N   Y DPEWAD KLA+AK LLS L RFK+ V+E+FECTPS+ L               L++   + G              SVYA +LGSEPSFT 
Subjt:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL---------------LVTSIQTLG-------------TSVYAAVLGSEPSFTY

Query:  FTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME
        FTPGFT TL +IF S SDS +      LPES+WPEIIGGLPN+S+PSDHLPIAA+FE TME
Subjt:  FTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME

TYK01841.1 carbon catabolite repressor protein 4-like protein 4 [Cucumis melo var. makuwa]1.2e-3352.8Show/hide
Query:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSV----------------------------PLLVTSIQTLGTSVYAAVLGSEPSFTY
        I+ N   Y DPEWAD KLA+AK LLS L RFK+ V+E+FECTPS+                            P  +  +  L  SVYA +LGSEPSFT 
Subjt:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSV----------------------------PLLVTSIQTLGTSVYAAVLGSEPSFTY

Query:  FTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME
        FTPGFT TL +IF S +DS +      LPES+WPEIIGGLPN+S+PSDHLPIAA+FE TME
Subjt:  FTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME

XP_008444261.1 PREDICTED: carbon catabolite repressor protein 4 homolog 4 [Cucumis melo]1.2e-3354.04Show/hide
Query:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL---------------LVTSIQTLG-------------TSVYAAVLGSEPSFTY
        I+ N   Y DPEWAD KLA+AK LLS L RFK+ V+E+FECTPS+ L               L++   + G              SVYA +LGSEPSFT 
Subjt:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL---------------LVTSIQTLG-------------TSVYAAVLGSEPSFTY

Query:  FTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME
        FTPGFT TL +IF S SDS +      LPES+WPEIIGGLPN+S+PSDHLPIAA+FE TME
Subjt:  FTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME

XP_011654304.2 carbon catabolite repressor protein 4 homolog 4 [Cucumis sativus]7.0e-3454.94Show/hide
Query:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL---------------LVTSIQTLG--------------TSVYAAVLGSEPSFT
        I+ N   Y DPEWAD KLA+AK LLS L RFK+ V+E+FECTPS+ L               LV+   + G              +SVYA +LGSEPSFT
Subjt:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL---------------LVTSIQTLG--------------TSVYAAVLGSEPSFT

Query:  YFTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME
         FTPGFT TL +IF S SD  +      LPESEWPEIIGGLPN+S+PSDHLPIAAEFE TME
Subjt:  YFTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME

XP_022936762.1 carbon catabolite repressor protein 4 homolog 4 isoform X2 [Cucurbita moschata]2.2e-3253.42Show/hide
Query:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL---------------LVTSIQTLG-------------TSVYAAVLGSEPSFTY
        I+ N   Y DPEWAD KLA+AK LLS L RFKT VSE+FECTPS+ L               L++   + G             +SVYA  LG EPSFT 
Subjt:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL---------------LVTSIQTLG-------------TSVYAAVLGSEPSFTY

Query:  FTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME
        FTPGFT TL +IF S SDS +      LPESE PE+IGGLPN+S+PSDHLPI A+FE TME
Subjt:  FTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME

TrEMBL top hitse value%identityAlignment
A0A0A0L0V7 Endo/exonuclease/phosphatase domain-containing protein1.3e-3354.94Show/hide
Query:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL---------------LVTSIQTLG--------------TSVYAAVLGSEPSFT
        I+ N   Y DPEWAD KLA+AK LLS L RFK+ V+E+FECTPSV L               LV+   + G              +SVY  +LGSEPSFT
Subjt:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL---------------LVTSIQTLG--------------TSVYAAVLGSEPSFT

Query:  YFTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME
         FTPGFT TL +IF S SD  +      LPESEWPEIIGGLPN+S+PSDHLPIAAEFE TME
Subjt:  YFTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME

A0A1S3B9X8 carbon catabolite repressor protein 4 homolog 45.8e-3454.04Show/hide
Query:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL---------------LVTSIQTLG-------------TSVYAAVLGSEPSFTY
        I+ N   Y DPEWAD KLA+AK LLS L RFK+ V+E+FECTPS+ L               L++   + G              SVYA +LGSEPSFT 
Subjt:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL---------------LVTSIQTLG-------------TSVYAAVLGSEPSFTY

Query:  FTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME
        FTPGFT TL +IF S SDS +      LPES+WPEIIGGLPN+S+PSDHLPIAA+FE TME
Subjt:  FTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME

A0A5A7UEY1 Carbon catabolite repressor protein 4-like protein 45.8e-3454.04Show/hide
Query:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL---------------LVTSIQTLG-------------TSVYAAVLGSEPSFTY
        I+ N   Y DPEWAD KLA+AK LLS L RFK+ V+E+FECTPS+ L               L++   + G              SVYA +LGSEPSFT 
Subjt:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL---------------LVTSIQTLG-------------TSVYAAVLGSEPSFTY

Query:  FTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME
        FTPGFT TL +IF S SDS +      LPES+WPEIIGGLPN+S+PSDHLPIAA+FE TME
Subjt:  FTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME

A0A5D3BPZ3 Carbon catabolite repressor protein 4-like protein 45.8e-3452.8Show/hide
Query:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSV----------------------------PLLVTSIQTLGTSVYAAVLGSEPSFTY
        I+ N   Y DPEWAD KLA+AK LLS L RFK+ V+E+FECTPS+                            P  +  +  L  SVYA +LGSEPSFT 
Subjt:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSV----------------------------PLLVTSIQTLGTSVYAAVLGSEPSFTY

Query:  FTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME
        FTPGFT TL +IF S +DS +      LPES+WPEIIGGLPN+S+PSDHLPIAA+FE TME
Subjt:  FTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME

A0A6J1F8E0 carbon catabolite repressor protein 4 homolog 4 isoform X11.1e-3253.42Show/hide
Query:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL---------------LVTSIQTLG-------------TSVYAAVLGSEPSFTY
        I+ N   Y DPEWAD KLA+AK LLS L RFKT VSE+FECTPS+ L               L++   + G             +SVYA  LG EPSFT 
Subjt:  IMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL---------------LVTSIQTLG-------------TSVYAAVLGSEPSFTY

Query:  FTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME
        FTPGFT TL +IF S SDS +      LPESE PE+IGGLPN+S+PSDHLPI A+FE TME
Subjt:  FTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME

SwissProt top hitse value%identityAlignment
A8MS41 Carbon catabolite repressor protein 4 homolog 46.8e-2444.44Show/hide
Query:  LFIMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL----------LVTSIQTLG-----------------TSVYAAVLGSEPSFT
        + I+ N   Y DPE AD KLA+AK LLS L +FKT +S+ FECTPS+ L          +V S    G                 +SVY    G EP FT
Subjt:  LFIMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL----------LVTSIQTLG-----------------TSVYAAVLGSEPSFT

Query:  YFTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME
          TPGFT+TL +IF+S SD  K      LPE + P+++G LPN+  PSDHLPI AEFE   E
Subjt:  YFTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME

C4V7I7 Probable CCR4-Not complex 3'-5'-exoribonuclease subunit Ccr42.0e-0728.24Show/hide
Query:  MLELCLLSNSRSLFIMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPLLVTSIQTLGTSVYA-------------------------
        ++ +  +S ++   I++N   Y DPE+ D K  +A +LL  L +    VS+ ++  PS+ LL        +SVY+                         
Subjt:  MLELCLLSNSRSLFIMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPLLVTSIQTLGTSVYA-------------------------

Query:  ----AVLGSEPSFTYFTPGFTDTLAFIFLSSS----DSTKLPESEWPEIIGGLPNYSFPSDHLPIAAEFE
            A L  E  FT FTP F   + FIF S +          E+E+ + + GLPN  FPSDH+ +A++F+
Subjt:  ----AVLGSEPSFTYFTPGFTDTLAFIFLSSS----DSTKLPESEWPEIIGGLPNYSFPSDHLPIAAEFE

Q1EA11 CCR4-Not complex 3'-5'-exoribonuclease subunit Ccr42.2e-0644.29Show/hide
Query:  SVYAAVLGSEPSFTYFTPGFTDTLAFIFLSSS--DSTKL---PESEWPEIIGGLPNYSFPSDHLPIAAEF
        S Y+ +   E SFT +TPGFTD + +I+ SS+    T L    + E+ + + G PNY FPSDHL + AEF
Subjt:  SVYAAVLGSEPSFTYFTPGFTDTLAFIFLSSS--DSTKL---PESEWPEIIGGLPNYSFPSDHLPIAAEF

Q5B778 CCR4-Not complex 3'-5'-exoribonuclease subunit Ccr47.1e-0542.86Show/hide
Query:  SVYAAVLGSEPSFTYFTPGFTDTLAFIFLSSSD---STKLPE--SEWPEIIGGLPNYSFPSDHLPIAAEF
        S Y A+   E SFT +TP F D L +I+ SS+    S  L E   ++ + + G PNY FPSDH+ + AEF
Subjt:  SVYAAVLGSEPSFTYFTPGFTDTLAFIFLSSSD---STKLPE--SEWPEIIGGLPNYSFPSDHLPIAAEF

Q8SU52 Probable CCR4-Not complex 3'-5'-exoribonuclease subunit Ccr43.2e-0536.99Show/hide
Query:  GTSVYAAVLGSEPSFTYFTPGFTDTLAFIF----LSSSDSTKLPESEWPEIIGGLPNYSFPSDHLPIAAEFEF
        G  +  A    +  FT FTPGF   + +IF    +S +      E E+ E + GLPN  FPSDH+ + A+F F
Subjt:  GTSVYAAVLGSEPSFTYFTPGFTDTLAFIF----LSSSDSTKLPESEWPEIIGGLPNYSFPSDHLPIAAEFEF

Arabidopsis top hitse value%identityAlignment
AT1G31500.1 DNAse I-like superfamily protein4.8e-2544.44Show/hide
Query:  LFIMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL----------LVTSIQTLG-----------------TSVYAAVLGSEPSFT
        + I+ N   Y DPE AD KLA+AK LLS L +FKT +S+ FECTPS+ L          +V S    G                 +SVY    G EP FT
Subjt:  LFIMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL----------LVTSIQTLG-----------------TSVYAAVLGSEPSFT

Query:  YFTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME
          TPGFT+TL +IF+S SD  K      LPE + P+++G LPN+  PSDHLPI AEFE   E
Subjt:  YFTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME

AT1G31500.2 DNAse I-like superfamily protein4.8e-2544.44Show/hide
Query:  LFIMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL----------LVTSIQTLG-----------------TSVYAAVLGSEPSFT
        + I+ N   Y DPE AD KLA+AK LLS L +FKT +S+ FECTPS+ L          +V S    G                 +SVY    G EP FT
Subjt:  LFIMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL----------LVTSIQTLG-----------------TSVYAAVLGSEPSFT

Query:  YFTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME
          TPGFT+TL +IF+S SD  K      LPE + P+++G LPN+  PSDHLPI AEFE   E
Subjt:  YFTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME

AT1G31500.3 DNAse I-like superfamily protein7.0e-0857.14Show/hide
Query:  LFIMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL
        + I+ N   Y DPE AD KLA+AK LLS L +FKT +S+ FECTPS+ L
Subjt:  LFIMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL

AT1G31500.4 DNAse I-like superfamily protein4.8e-2544.44Show/hide
Query:  LFIMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL----------LVTSIQTLG-----------------TSVYAAVLGSEPSFT
        + I+ N   Y DPE AD KLA+AK LLS L +FKT +S+ FECTPS+ L          +V S    G                 +SVY    G EP FT
Subjt:  LFIMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPL----------LVTSIQTLG-----------------TSVYAAVLGSEPSFT

Query:  YFTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME
          TPGFT+TL +IF+S SD  K      LPE + P+++G LPN+  PSDHLPI AEFE   E
Subjt:  YFTPGFTDTLAFIFLSSSDSTK------LPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME

AT1G31530.1 DNAse I-like superfamily protein2.6e-1037.69Show/hide
Query:  WADDKLAKAKLLLSCLTRFKTSVSERFECTPSV---------PLLVTSIQTLG-------TSVYAAVLGSEPSFTYFTPGFTDTLAFIFLSSSD---STK
        W D KLA+ K L++ L  FK  +S    C+PSV         P +   I +          SVY    G EP FT   PGF +TL ++F + S+     K
Subjt:  WADDKLAKAKLLLSCLTRFKTSVSERFECTPSV---------PLLVTSIQTLG-------TSVYAAVLGSEPSFTYFTPGFTDTLAFIFLSSSD---STK

Query:  LPESEWPEIIGGLPNYSFPSDHLPIAAEFE
        L +S  P+ +  LPN   PSDHLPI  EFE
Subjt:  LPESEWPEIIGGLPNYSFPSDHLPIAAEFE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATCCAGATATCTGGTTTAACACATCTATATATAATGGTAATGGCTATAAAATTAGCTATAAATTTAAACCAGTAAGTCTTGTGAAAATATTACCAGGTCAGTTA
TGTTGCACTACACAGGATATTATGTTGGAATTATGCCTGCTTTCAAACTCAAGAAGCCTTTTCATCATGTTAAATGATATTTATTACACGGATCCAGAATGGGCT
GATGACAAGCTTGCCAAGGCCAAATTGCTTTTATCATGCCTAACTCGATTCAAGACATCAGTGTCTGAAAGGTTTGAATGCACACCCTCAGTACCTTTGCTGGTG
ACTTCAATTCAAACCCTGGGGACAAGCGTATATGCTGCTGTACTAGGGAGTGAACCTTCATTTACATACTTCACTCCTGGCTTCACTGATACTCTTGCATTTATA
TTTCTTTCATCTTCTGACTCTACAAAACTCCCAGAATCAGAATGGCCGGAGATTATTGGTGGGTTGCCCAATTATAGCTTCCCAAGTGATCATCTTCCTATTGCT
GCTGAATTTGAATTCACAATGGAATAA
mRNA sequenceShow/hide mRNA sequence
GATCCAGATATCTGGTTTAACACATCTATATATAATGGTAATGGCTATAAAATTAGCTATAAATTTAAACCAGTAAGTCTTGTGAAAATATTACCAGGTCAGTTA
TGTTGCACTACACAGGATATTATGTTGGAATTATGCCTGCTTTCAAACTCAAGAAGCCTTTTCATCATGTTAAATGATATTTATTACACGGATCCAGAATGGGCT
GATGACAAGCTTGCCAAGGCCAAATTGCTTTTATCATGCCTAACTCGATTCAAGACATCAGTGTCTGAAAGGTTTGAATGCACACCCTCAGTACCTTTGCTGGTG
ACTTCAATTCAAACCCTGGGGACAAGCGTATATGCTGCTGTACTAGGGAGTGAACCTTCATTTACATACTTCACTCCTGGCTTCACTGATACTCTTGCATTTATA
TTTCTTTCATCTTCTGACTCTACAAAACTCCCAGAATCAGAATGGCCGGAGATTATTGGTGGGTTGCCCAATTATAGCTTCCCAAGTGATCATCTTCCTATTGCT
GCTGAATTTGAATTCACAATGGAATAA
Protein sequenceShow/hide protein sequence
DPDIWFNTSIYNGNGYKISYKFKPVSLVKILPGQLCCTTQDIMLELCLLSNSRSLFIMLNDIYYTDPEWADDKLAKAKLLLSCLTRFKTSVSERFECTPSVPLLV
TSIQTLGTSVYAAVLGSEPSFTYFTPGFTDTLAFIFLSSSDSTKLPESEWPEIIGGLPNYSFPSDHLPIAAEFEFTME