; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh01G014800 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh01G014800
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description60S ribosomal protein L39
Genome locationCma_Chr01:10418899..10419848
RNA-Seq ExpressionCmaCh01G014800
SyntenyCmaCh01G014800
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0006520 - cellular amino acid metabolic process (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity (molecular function)
GO:0030170 - pyridoxal phosphate binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5748142.1 hypothetical protein HS088_TW04G00092 [Tripterygium wilfordii]6.4e-1069.64Show/hide
Query:  IRFSHLFQFAAVSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASH
        +R+ HL     VSQD Q+QE+AREEDEAEQAYP LDP ENRQY Q+QC+AQALAS+
Subjt:  IRFSHLFQFAAVSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASH

KAG5225968.1 60S ribosomal protein [Salix suchowensis]2.4e-0970Show/hide
Query:  AAVSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASHQAR
        AAV+QD Q+QE+A EEDEAEQA+P+LDP E+RQ++Q+QC+AQALA +QAR
Subjt:  AAVSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASHQAR

KAG7031772.1 hypothetical protein SDJN02_05813, partial [Cucurbita argyrosperma subsp. argyrosperma]5.9e-1696.08Show/hide
Query:  VSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASHQARVLR
        VSQDFQNQE+AREEDEAEQAYPALDPSENRQYYQIQ KAQALASHQARVLR
Subjt:  VSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASHQARVLR

RXH73108.1 hypothetical protein DVH24_012792, partial [Malus domestica]3.2e-0965.38Show/hide
Query:  AVSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASHQARVLR
        AV+Q+  +QE+A EEDEAEQA+P+LDP E+RQ++Q+QC+ QALA HQAR+LR
Subjt:  AVSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASHQARVLR

VVA11576.1 unknown partial [Prunus dulcis]5.4e-0962.3Show/hide
Query:  SHLFQFAAVSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASHQARVLRFF
        S     +AV QD  NQE+A EEDEAEQA+P+LDP E+RQ++Q+Q +AQALA HQAR LR F
Subjt:  SHLFQFAAVSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASHQARVLRFF

TrEMBL top hitse value%identityAlignment
A0A498HNJ3 Uncharacterized protein (Fragment)1.5e-0965.38Show/hide
Query:  AVSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASHQARVLR
        AV+Q+  +QE+A EEDEAEQA+P+LDP E+RQ++Q+QC+ QALA HQAR+LR
Subjt:  AVSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASHQARVLR

A0A5E4E8H2 Uncharacterized protein2.6e-0962.3Show/hide
Query:  SHLFQFAAVSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASHQARVLRFF
        S     +AV QD  NQE+A EEDEAEQA+P+LDP E+RQ++Q+Q +AQALA HQAR LR F
Subjt:  SHLFQFAAVSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASHQARVLRFF

A0A6N2M5H5 Uncharacterized protein1.8e-1071.15Show/hide
Query:  AAVSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASHQARVL
        AAV+QD Q+QE+A EEDEAEQA+P+LDP E+RQ++Q+QC+AQALA +QARVL
Subjt:  AAVSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASHQARVL

A0A7J7DP31 Uncharacterized protein3.1e-1069.64Show/hide
Query:  IRFSHLFQFAAVSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASH
        +R+ HL     VSQD Q+QE+AREEDEAEQAYP LDP ENRQY Q+QC+AQALAS+
Subjt:  IRFSHLFQFAAVSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASH

C6SYV0 Uncharacterized protein (Fragment)7.6e-0967.31Show/hide
Query:  AVSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASHQARVLR
        AV+QD QNQE+  EEDEAEQAYP LDP E+RQ++Q+Q +A +LASHQA +LR
Subjt:  AVSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASHQARVLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGTGATTCGATTTTCTCATCTCTTTCAATTCGCAGCCGTCTCACAAGACTTTCAGAATCAAGAAAAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCTATCCCGC
ACTGGATCCGTCTGAGAACCGACAATACTATCAGATACAATGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGGTTCTTTCGATTTATAACTTTAATGC
TCATTTACTTTGAATTTGTTAAGATTGCGGACATAAGTGTTCTTAAAGACCTATTATTATATTTGCGCAACTGA
mRNA sequenceShow/hide mRNA sequence
GTTAGACCGCCGTCTGCTTCCAAGTTCGCCGCGGAACACCGGACTCGAAGATGTTTGTGATTCGATTTTCTCATCTCTTTCAATTCGCAGCCGTCTCACAAGACTTTCAG
AATCAAGAAAAAGCTCGCGAAGAAGATGAGGCAGAACAGGCCTATCCCGCACTGGATCCGTCTGAGAACCGACAATACTATCAGATACAATGCAAAGCGCAGGCACTGGC
GTCGCACCAAGCTAGGGTTCTGAGGTTCTTTCGATTTATAACTTTAATGCTCATTTACTTTGAATTTGTTAAGATTGCGGACATAAGTGTTCTTAAAGACCTATTATTAT
ATTTGCGCAACTGAAATTTAGTTCATATGATATTTTTGTTGAATCATTTCTACACTGAAGTTTAAAGTAGTTCGGGATAGAATGAGTTTACTGGCAGGCATCATGTTTGT
GGATTAGCAGTTTATCCACATATTCATGGCATTTACCTCTTATTTTGAAGAACTTAAGCGAGCTTGATAGACATTCTTCAAGTAATTGATCGAAGTCAAGAGATTTATGG
AAACTATTTACATTAACATATCACGATTTTCCACTCCTTAATGAAGTTATGATTGTTATCAGTATTCGCCTTTAGATTCTTGAAACGTTGCTAGTTCATATTTTCCACCA
TATCATTTACCCCTTGCCTTCAATAACGTTTGGGTTTATAGAAATCTGATAAAATATTTTCTTATAGATAGAATATTTCTGCCGAAGTCCGTCTCGC
Protein sequenceShow/hide protein sequence
MFVIRFSHLFQFAAVSQDFQNQEKAREEDEAEQAYPALDPSENRQYYQIQCKAQALASHQARVLRFFRFITLMLIYFEFVKIADISVLKDLLLYLRN