CuGenDBv2

Gene ID	CmaCh01G014860
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	DNA ligase
Genome location	Cma_Chr01:10456219..10456593
RNA-Seq Expression	CmaCh01G014860
Synteny	CmaCh01G014860
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7031776.1 hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.0e-58

92.68

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Query:  MLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF
        MLN+YHPFSFTRKLKSSI CFRRDH DF E+E DSSPRTPRSPLKSMAAEFPE+RGMCRNLVARIGR RRRYHHSADFRYDPSSYALNFEDEQVRDDDEF
Subjt:  MLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF

Query:  PIRDFASRLPASPPTSRRLSPAK
        PIRDFASRLPASPPTS RLSPAK
Subjt:  PIRDFASRLPASPPTSRRLSPAK

XP_022138148.1 uncharacterized protein LOC111009386 [Momordica charantia]

3.6e-42

73.81

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Query:  MMLNEYH--PFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDD
        M+ NEY+  PFSFT KLKSSI CFR DH D  + ED++S R+PRSPLKS A+E  E+RGMCRNLVARIGR RRRYHHSADFRYDPSSYALNFEDE  R D
Subjt:  MMLNEYH--PFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDD

Query:  DEFPIRDFASRLPASPPTSRRLSPAK
        D+FPIRDFASRLPASP +S    PAK
Subjt:  DEFPIRDFASRLPASPPTSRRLSPAK

XP_022940408.1 uncharacterized protein LOC111446022 [Cucurbita moschata]

2.1e-58

92.74

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Query:  MMLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDE
        MMLN+YHPFSFTRKLKSSI CFRRDH DF E+E DSSPRTPRSPLKSMAAEFPE+RGMCRNLVARIGR RRRYHHSADFRYDPSSYALNFEDEQVRDDDE
Subjt:  MMLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDE

Query:  FPIRDFASRLPASPPTSRRLSPAK
        FPIRDFASRLPASPPTS RLSPAK
Subjt:  FPIRDFASRLPASPPTSRRLSPAK

XP_022981208.1 uncharacterized protein LOC111480417 [Cucurbita maxima]

4.4e-64

100

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Query:  MMLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDE
        MMLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDE
Subjt:  MMLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDE

Query:  FPIRDFASRLPASPPTSRRLSPAK
        FPIRDFASRLPASPPTSRRLSPAK
Subjt:  FPIRDFASRLPASPPTSRRLSPAK

XP_023523424.1 uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo]

1.9e-59

94.31

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Query:  MLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF
        MLN+YHPFSFTRKLKSSI CFRRDH DF E+EDDSSPRTPRSPLKSMAAEFPE+RGMCRNLVARIGR RRRYHHSADFRYDPSSYALNFEDEQVRDDDEF
Subjt:  MLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDEF

Query:  PIRDFASRLPASPPTSRRLSPAK
        PIRDFASRLPASPPTSRRLSPAK
Subjt:  PIRDFASRLPASPPTSRRLSPAK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BVQ9 uncharacterized protein LOC103493778

2.3e-34

70.94

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Query:  MLNEYHPFSFTRKLKSSI-RCFRRDH-SDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIG-RCRRRYHHSADFRYDPSSYALNFEDEQVRDD
        M N Y+PFSFT KLKSSI  CFR DH ++  E+EDD+        LKSM ++ PE+RGMCR+LVARI    RRRYHHSADFRYDPSSYALNFEDEQVRDD
Subjt:  MLNEYHPFSFTRKLKSSI-RCFRRDH-SDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIG-RCRRRYHHSADFRYDPSSYALNFEDEQVRDD

Query:  DEFPIRDFASRLPASPP
        +EFPIRDF SRLPASPP
Subjt:  DEFPIRDFASRLPASPP

A0A5A7VBS3 DNA ligase

2.3e-34

70.94

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Query:  MLNEYHPFSFTRKLKSSI-RCFRRDH-SDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIG-RCRRRYHHSADFRYDPSSYALNFEDEQVRDD
        M N Y+PFSFT KLKSSI  CFR DH ++  E+EDD+        LKSM ++ PE+RGMCR+LVARI    RRRYHHSADFRYDPSSYALNFEDEQVRDD
Subjt:  MLNEYHPFSFTRKLKSSI-RCFRRDH-SDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIG-RCRRRYHHSADFRYDPSSYALNFEDEQVRDD

Query:  DEFPIRDFASRLPASPP
        +EFPIRDF SRLPASPP
Subjt:  DEFPIRDFASRLPASPP

A0A6J1CC83 uncharacterized protein LOC111009386

1.7e-42

73.81

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Query:  MMLNEYH--PFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDD
        M+ NEY+  PFSFT KLKSSI CFR DH D  + ED++S R+PRSPLKS A+E  E+RGMCRNLVARIGR RRRYHHSADFRYDPSSYALNFEDE  R D
Subjt:  MMLNEYH--PFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDD

Query:  DEFPIRDFASRLPASPPTSRRLSPAK
        D+FPIRDFASRLPASP +S    PAK
Subjt:  DEFPIRDFASRLPASPPTSRRLSPAK

A0A6J1FP70 uncharacterized protein LOC111446022

1.0e-58

92.74

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Query:  MMLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDE
        MMLN+YHPFSFTRKLKSSI CFRRDH DF E+E DSSPRTPRSPLKSMAAEFPE+RGMCRNLVARIGR RRRYHHSADFRYDPSSYALNFEDEQVRDDDE
Subjt:  MMLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDE

Query:  FPIRDFASRLPASPPTSRRLSPAK
        FPIRDFASRLPASPPTS RLSPAK
Subjt:  FPIRDFASRLPASPPTSRRLSPAK

A0A6J1J1H3 uncharacterized protein LOC111480417

2.1e-64

100

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Query:  MMLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDE
        MMLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDE
Subjt:  MMLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDE

Query:  FPIRDFASRLPASPPTSRRLSPAK
        FPIRDFASRLPASPPTSRRLSPAK
Subjt:  FPIRDFASRLPASPPTSRRLSPAK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G48020.1 unknown protein

5.4e-04

42.86

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Query:  RNLVARIGRCRRR---YHHSADFRYDPSSYALNFEDEQVRDDDEF---PIRDFASRLPASPPTSRRLSPA
        +  + R  R  RR   +  S  FRYDP SY L+FEDE   DDDE     +R F+ R  AS P +   SPA
Subjt:  RNLVARIGRCRRR---YHHSADFRYDPSSYALNFEDEQVRDDDEF---PIRDFASRLPASPPTSRRLSPA

AT5G11070.1 unknown protein

2.1e-11

46.46

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Query:  RTPRSP---LKSMAAEFPEIRGMCRNLVARI-----------GRCRRRYHHS----ADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSRR
        RTPRSP   LKS A E  E+R  CR + +RI             C   +HHS     DF YDP SYALNFED  VR DD+    +F +RLP SP T  R
Subjt:  RTPRSP---LKSMAAEFPEIRGMCRNLVARI-----------GRCRRRYHHS----ADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSRR

AT5G35090.1 unknown protein

5.1e-10

33.58

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Query:  SFTRKLKSSI---RCFRRDHSDFFESEDDSSPRTPRSPLKS--------MAAEFPEI-------RGMCRNLVARI--------GRCRRRYHHSADFRYDP
        S  +KLKS      CFR  +    ++  D  P +P +  KS        M  + P +          C++L+ R+        G  +    H+ADF YDP
Subjt:  SFTRKLKSSI---RCFRRDHSDFFESEDDSSPRTPRSPLKS--------MAAEFPEI-------RGMCRNLVARI--------GRCRRRYHHSADFRYDP

Query:  SSYALNFEDEQVRDD-DEFPIRDFASRLPASPPTSRR
        SSYALNF+     D+ D FP+R+F++RLP SPP+S +
Subjt:  SSYALNFEDEQVRDD-DEFPIRDFASRLPASPPTSRR

Sequences

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CDS sequence

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ATGATGTTGAACGAGTACCATCCATTTTCATTTACTCGCAAGCTCAAATCCTCAATCCGCTGTTTCCGTCGCGATCATAGCGATTTCTTTGAAAGCGAAGACGATTCTTC
ACCAAGAACCCCTAGATCGCCGCTGAAATCAATGGCTGCAGAGTTCCCGGAGATTCGAGGAATGTGCAGGAATCTCGTCGCTCGGATCGGCAGGTGTCGCCGCCGGTACC
ATCACTCCGCCGATTTCCGATACGATCCTTCTAGCTATGCGCTTAATTTCGAGGACGAACAGGTTCGGGATGATGATGAGTTTCCGATTAGGGATTTCGCTTCGAGATTG
CCGGCGTCTCCGCCGACTTCCCGGAGACTTTCGCCCGCGAAATGA

mRNA sequence

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Protein sequence

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MMLNEYHPFSFTRKLKSSIRCFRRDHSDFFESEDDSSPRTPRSPLKSMAAEFPEIRGMCRNLVARIGRCRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRL
PASPPTSRRLSPAK

CmaCh01G014860 (gene) of Cucurbita maxima (Rimu) v1.1 genome