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CmaCh01G016190 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh01G016190
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionHistone H2A
Genome locationCma_Chr01:11121258..11125993
RNA-Seq ExpressionCmaCh01G016190
SyntenyCmaCh01G016190
Gene Ontology termsGO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8010232.1 hypothetical protein FH972_006618 [Carpinus fangiana]1.4e-0444.87Show/hide
Query:  KSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIAIMNHQQNHFPTVEAKYAA---PLDGAVLGLKKSMP
        KSVK  L F  GRI R+LKKGRY +RT   A ++L  VL+Y+A    + +H PT E ++ +   PL  AV G  K++P
Subjt:  KSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIAIMNHQQNHFPTVEAKYAA---PLDGAVLGLKKSMP
KAG7028431.1 putative histone H2A.5, partial [Cucurbita argyrosperma subsp. argyrosperma]8.3e-0568.18Show/hide
Query:  SVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIAIM
        S K  L  LDGR  RYLKKGRY KRT VDALI+LV+V KY+A M
Subjt:  SVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIAIM
TrEMBL top hitse value%identityAlignment
A0A5N6QWC4 Uncharacterized protein6.9e-0544.87Show/hide
Query:  KSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIAIMNHQQNHFPTVEAKYAA---PLDGAVLGLKKSMP
        KSVK  L F  GRI R+LKKGRY +RT   A ++L  VL+Y+A    + +H PT E ++ +   PL  AV G  K++P
Subjt:  KSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIAIMNHQQNHFPTVEAKYAA---PLDGAVLGLKKSMP
SwissProt top hitse value%identityAlignment
A2XZN0 Probable histone H2A.61.9e-0452.17Show/hide
Query:  PSCKSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA
        P  +SVK  L F  GRI RYLKKGRY +R    A ++L  VL+Y+A
Subjt:  PSCKSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA
P02276 Histone H2A.2.17.3e-0453.49Show/hide
Query:  KSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA
        KS+K  L F  GRI RYLKKGRY +R    A ++L  VL+Y+A
Subjt:  KSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA
P25469 Histone H2A.15.6e-0455.81Show/hide
Query:  KSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA
        KS+K  L F  GRI RYLKKGRY +R    A I+L  VL+Y+A
Subjt:  KSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA
Q75L11 Probable histone H2A.61.9e-0452.17Show/hide
Query:  PSCKSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA
        P  +SVK  L F  GRI RYLKKGRY +R    A ++L  VL+Y+A
Subjt:  PSCKSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA
Q9LZ46 Probable histone H2A.41.1e-0454.35Show/hide
Query:  PSCKSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA
        P  +SVK  L F  GRI RYLKKGRY KR    A ++L  VL+Y+A
Subjt:  PSCKSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA
Arabidopsis top hitse value%identityAlignment
AT5G02560.1 histone H2A 128.0e-0654.35Show/hide
Query:  PSCKSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA
        P  +SVK  L F  GRI RYLKKGRY KR    A ++L  VL+Y+A
Subjt:  PSCKSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA
AT5G02560.2 histone H2A 124.7e-0653.06Show/hide
Query:  PSCKSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIAIMN
        P  +SVK  L F  GRI RYLKKGRY KR    A ++L  VL+Y+A  N
Subjt:  PSCKSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIAIMN
AT5G27670.1 histone H2A 71.2e-0455.81Show/hide
Query:  KSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA
        KSVK  L F  GRI RYLKKGRY  R    A ++L  VL+Y+A
Subjt:  KSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA
AT5G59870.1 histone H2A 65.7e-0448.84Show/hide
Query:  KSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA
        KS+K  L F  GRI R+LKKGRY +R    A +++  VL+Y+A
Subjt:  KSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCAGTGGTCAAAAGAAGCTAAAGGATCCAGTGGTCACTTGACAAGGTGCAAAAATATGGAAATGGAGGACGTAGACGAAGACAATAAAGTTGAGGTCATTCTACA
AGGAATCCAACTCTGGTTGCTACTTTCAATGCCTCCATCATGTAAATCTGTGAAGGTTGAACTCCTATTCCTAGATGGAAGAATCGAACGGTACCTTAAGAAAGGCCGCT
ATGGAAAGCGCACTGTCGTAGATGCTCTAATCCACCTGGTTATCGTCCTCAAATACATTGCCATTATGAATCACCAGCAGAACCATTTCCCGACAGTGGAAGCAAAATAT
GCAGCACCTCTAGATGGGGCGGTGCTGGGTTTGAAGAAAAGCATGCCATCCTTATCAGAAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGATCCAGTGGTCAAAAGAAGCTAAAGGATCCAGTGGTCACTTGACAAGGTGCAAAAATATGGAAATGGAGGACGTAGACGAAGACAATAAAGTTGAGGTCATTCTACA
AGGAATCCAACTCTGGTTGCTACTTTCAATGCCTCCATCATGTAAATCTGTGAAGGTTGAACTCCTATTCCTAGATGGAAGAATCGAACGGTACCTTAAGAAAGGCCGCT
ATGGAAAGCGCACTGTCGTAGATGCTCTAATCCACCTGGTTATCGTCCTCAAATACATTGCCATTATGAATCACCAGCAGAACCATTTCCCGACAGTGGAAGCAAAATAT
GCAGCACCTCTAGATGGGGCGGTGCTGGGTTTGAAGAAAAGCATGCCATCCTTATCAGAAGGATGA
Protein sequenceShow/hide protein sequence
MIQWSKEAKGSSGHLTRCKNMEMEDVDEDNKVEVILQGIQLWLLLSMPPSCKSVKVELLFLDGRIERYLKKGRYGKRTVVDALIHLVIVLKYIAIMNHQQNHFPTVEAKY
AAPLDGAVLGLKKSMPSLSEG