; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh01G017530 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh01G017530
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionRNA-binding protein 1-like
Genome locationCma_Chr01:11815269..11816427
RNA-Seq ExpressionCmaCh01G017530
SyntenyCmaCh01G017530
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608405.1 RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia]3.6e-11097.49Show/hide
Query:  KNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSCGYTVYPGFTP
        K+YFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSCGYTVYPGFTP
Subjt:  KNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSCGYTVYPGFTP

Query:  FPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVYPTYSSNGLSTPVAGYETADARRKVEPPTRAQKNMSADAVPFHAKDRA
        FPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWY PNFFGMFPPPHK+SLVYPTYSSNGLSTPVAGYETADARRKV+PPTRAQKNMSADAVPFHAKD+A
Subjt:  FPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVYPTYSSNGLSTPVAGYETADARRKVEPPTRAQKNMSADAVPFHAKDRA

KAG7037746.1 RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]9.3e-13596.71Show/hide
Query:  VYGKETVELARDQRMSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEV
        + GKETVELAR+QRMSNGTRMEDQFRGRKIFVGGLSAELTEDDFK+YFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEV
Subjt:  VYGKETVELARDQRMSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEV

Query:  KRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVYPTYS
        KRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWY PNFFGMFPPPHK+SLVYPTYS
Subjt:  KRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVYPTYS

Query:  SNGLSTPVAGYETADARRKVEPPTRAQKNMSADAVPFHAKDRA
        SNGLSTPVAGYETADARRKV+PPTRAQKNMSADAVPFHAKD+A
Subjt:  SNGLSTPVAGYETADARRKVEPPTRAQKNMSADAVPFHAKDRA

XP_022940975.1 RNA-binding protein 1-like [Cucurbita moschata]1.1e-12797.82Show/hide
Query:  MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGH
        M NGT MEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGH
Subjt:  MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGH

Query:  ISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVYPTYSSNGLSTPVAGYETA
        ISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWY PNFFGMFPPPHKNSLVYPTYSSNGLSTPVAGYETA
Subjt:  ISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVYPTYSSNGLSTPVAGYETA

Query:  DARRKVEPPTRAQKNMSADAVPFHAKDRA
        DARRKV+PPTRAQKNMSADAVPFHAKD+A
Subjt:  DARRKVEPPTRAQKNMSADAVPFHAKDRA

XP_022982410.1 RNA-binding protein 1-like [Cucurbita maxima]1.4e-130100Show/hide
Query:  MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGH
        MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGH
Subjt:  MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGH

Query:  ISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVYPTYSSNGLSTPVAGYETA
        ISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVYPTYSSNGLSTPVAGYETA
Subjt:  ISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVYPTYSSNGLSTPVAGYETA

Query:  DARRKVEPPTRAQKNMSADAVPFHAKDRA
        DARRKVEPPTRAQKNMSADAVPFHAKDRA
Subjt:  DARRKVEPPTRAQKNMSADAVPFHAKDRA

XP_023524364.1 RNA-binding protein 1-like [Cucurbita pepo subsp. pepo]1.3e-12898.25Show/hide
Query:  MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGH
        MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGH
Subjt:  MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGH

Query:  ISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVYPTYSSNGLSTPVAGYETA
        ISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWY PNFFGMFPPPHKNSLVYPTYSSNGLSTPVAGYETA
Subjt:  ISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVYPTYSSNGLSTPVAGYETA

Query:  DARRKVEPPTRAQKNMSADAVPFHAKDRA
        D RRKVEPP+RAQKNMSADAVPFHAKD+A
Subjt:  DARRKVEPPTRAQKNMSADAVPFHAKDRA

TrEMBL top hitse value%identityAlignment
A0A0A0L563 RRM domain-containing protein1.9e-6458.51Show/hide
Query:  TRME---DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI
        TRM+   DQ RGRKIFVGGLSAELTE++F++YFE FG++TDVVVM DSVT RPRGFGF+TF+S++SVDSVLQ NFHELNGRRVEVKRAIPKKGNYNG HI
Subjt:  TRME---DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI

Query:  -----SKSPL--SESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFF--GMFPPPHKNSLVYPTY-----SS
             +KSPL     NV   YPYY  GY +YPGFT FP YG     YGS+ YGNWF P    +AS   W+GPNFF  GM PP  +NSL++P+      S 
Subjt:  -----SKSPL--SESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFF--GMFPPPHKNSLVYPTY-----SS

Query:  NGLSTPVAGYETADARRKVEPPTRAQKNMSADAVPFHAKDR
        NG++    G        +++  T  ++ MSADA PF  KDR
Subjt:  NGLSTPVAGYETADARRKVEPPTRAQKNMSADAVPFHAKDR

A0A5N6R9D7 Uncharacterized protein4.1e-4349.76Show/hide
Query:  LARDQRMSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKG
        L++     NG   ++QFR +KIFVGGLSA LTE++FKNYF++FGRVTDVVVM DS T RPRGFGFITFDS +SV++V+QN+FHELNGR VEVKRA+PK+ 
Subjt:  LARDQRMSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKG

Query:  NYNGGHISKSPLSESNVLP-SYPYYSCGYTVYPGFTPFPPY-GPGFGLYGSDPYGNWFSPSFG---------PMASPAAWYGPNFF--GMFPPPHKNSLV
        N        + +      P S+P YS  Y + PG+ PFP + G G  LYG+  Y  W+ PS G         P+A    WYGP     G FP P  ++ +
Subjt:  NYNGGHISKSPLSESNVLP-SYPYYSCGYTVYPGFTPFPPY-GPGFGLYGSDPYGNWFSPSFG---------PMASPAAWYGPNFF--GMFPPPHKNSLV

Query:  YPTYSSNGL
        YP Y + G+
Subjt:  YPTYSSNGL

A0A6J1C724 RNA-binding protein 1-like6.0e-5554.73Show/hide
Query:  NGTRME---DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGG
        +  RME   DQ RG+KIFVGGL ++LTE++FK+YFEKFG++TDVVVM+DSVT RPRGFGFITFDSV+SV+ VLQNNFHELNGRRVEVKRA+PK  N N  
Subjt:  NGTRME---DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGG

Query:  H--ISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNW-FSPSFG------PMASPAAWYGPNFF--GMFPPPHKNSLVYPTYSSN
        +    KSPLS  +V   YP++S G  VYPG+ PFP Y      YGS  YG+W ++  +G      P+   +AWY PN F  GMFP P+ NS+++P YSS 
Subjt:  H--ISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNW-FSPSFG------PMASPAAWYGPNFF--GMFPPPHKNSLVYPTYSSN

Query:  G--LSTPVAGYETADARRKVEPPTRAQKNMSADAVPFHAKDRA
        G  L  P+AG              R   NMSADAVPF   +RA
Subjt:  G--LSTPVAGYETADARRKVEPPTRAQKNMSADAVPFHAKDRA

A0A6J1FS87 RNA-binding protein 1-like5.4e-12897.82Show/hide
Query:  MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGH
        M NGT MEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGH
Subjt:  MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGH

Query:  ISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVYPTYSSNGLSTPVAGYETA
        ISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWY PNFFGMFPPPHKNSLVYPTYSSNGLSTPVAGYETA
Subjt:  ISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVYPTYSSNGLSTPVAGYETA

Query:  DARRKVEPPTRAQKNMSADAVPFHAKDRA
        DARRKV+PPTRAQKNMSADAVPFHAKD+A
Subjt:  DARRKVEPPTRAQKNMSADAVPFHAKDRA

A0A6J1J2K5 RNA-binding protein 1-like6.8e-131100Show/hide
Query:  MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGH
        MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGH
Subjt:  MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGH

Query:  ISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVYPTYSSNGLSTPVAGYETA
        ISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVYPTYSSNGLSTPVAGYETA
Subjt:  ISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVYPTYSSNGLSTPVAGYETA

Query:  DARRKVEPPTRAQKNMSADAVPFHAKDRA
        DARRKVEPPTRAQKNMSADAVPFHAKDRA
Subjt:  DARRKVEPPTRAQKNMSADAVPFHAKDRA

SwissProt top hitse value%identityAlignment
O88569 Heterogeneous nuclear ribonucleoproteins A2/B11.4e-1944.44Show/hide
Query:  ETVELARDQRMSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAI
        ETV L R +      R ++QF  RK+F+GGLS E TE+  +NY+E++G++TD VVMRD  +KR RGFGF+TF S+  VD+ +    H ++GR VE KRA+
Subjt:  ETVELARDQRMSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAI

Query:  PK-KGNYNGGHISKSPL
         + +    G H++   L
Subjt:  PK-KGNYNGGHISKSPL

P22626 Heterogeneous nuclear ribonucleoproteins A2/B11.4e-1944.44Show/hide
Query:  ETVELARDQRMSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAI
        ETV L R +      R ++QF  RK+F+GGLS E TE+  +NY+E++G++TD VVMRD  +KR RGFGF+TF S+  VD+ +    H ++GR VE KRA+
Subjt:  ETVELARDQRMSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAI

Query:  PK-KGNYNGGHISKSPL
         + +    G H++   L
Subjt:  PK-KGNYNGGHISKSPL

Q5RBU8 Heterogeneous nuclear ribonucleoproteins A2/B11.4e-1944.44Show/hide
Query:  ETVELARDQRMSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAI
        ETV L R +      R ++QF  RK+F+GGLS E TE+  +NY+E++G++TD VVMRD  +KR RGFGF+TF S+  VD+ +    H ++GR VE KRA+
Subjt:  ETVELARDQRMSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAI

Query:  PK-KGNYNGGHISKSPL
         + +    G H++   L
Subjt:  PK-KGNYNGGHISKSPL

Q8W034 Heterogeneous nuclear ribonucleoprotein 14.1e-2437.08Show/hide
Query:  RKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISK----------
        +KIFVGGL   LT+++F+ YFE +G VTDV +M D  T RPRGFGF++FDS  +VDSVL   FH+L+G++VEVKRA+PK  N  GG  S           
Subjt:  RKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISK----------

Query:  ------------------SPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYG-----SDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSL
                             S  N LPSY   S GY    G       G G+G YG     +  YG   +  +G    P A YG +  G+ P   +NS 
Subjt:  ------------------SPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYG-----SDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSL

Query:  VYPTYSSNGLSTPVAGYETADARRKV---EPPTRAQKNMS
         + T +S+G   P  G   A +   V    PPT++    S
Subjt:  VYPTYSSNGLSTPVAGYETADARRKV---EPPTRAQKNMS

Q9C652 RNA-binding protein 11.9e-2942.72Show/hide
Query:  QRMSNGTRMEDQ----FRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKG
        Q+M+ G R         R +KIFVGGLS+  TE++FK+YFE+FGR TDVVVM D VT RPRGFGF+T+DS  SV+ V+Q+NFHEL+ +RVEVKRAIPK+G
Subjt:  QRMSNGTRMEDQ----FRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKG

Query:  --NYNGGHISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSD-PYGNWFSPSFGPMASPAAWYGPNFFGMFP----PPHKNSLVYPTYSS
          + NG  ++  P   S     Y     GY +   F P P +G    +     PYG  F+     ++       P  F   P    PP  N+L Y  Y  
Subjt:  --NYNGGHISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSD-PYGNWFSPSFGPMASPAAWYGPNFFGMFP----PPHKNSLVYPTYSS

Query:  NGL---STPVAGY
        NG     T ++GY
Subjt:  NGL---STPVAGY

Arabidopsis top hitse value%identityAlignment
AT1G58470.1 RNA-binding protein 11.3e-3042.72Show/hide
Query:  QRMSNGTRMEDQ----FRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKG
        Q+M+ G R         R +KIFVGGLS+  TE++FK+YFE+FGR TDVVVM D VT RPRGFGF+T+DS  SV+ V+Q+NFHEL+ +RVEVKRAIPK+G
Subjt:  QRMSNGTRMEDQ----FRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKG

Query:  --NYNGGHISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSD-PYGNWFSPSFGPMASPAAWYGPNFFGMFP----PPHKNSLVYPTYSS
          + NG  ++  P   S     Y     GY +   F P P +G    +     PYG  F+     ++       P  F   P    PP  N+L Y  Y  
Subjt:  --NYNGGHISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSD-PYGNWFSPSFGPMASPAAWYGPNFFGMFP----PPHKNSLVYPTYSS

Query:  NGL---STPVAGY
        NG     T ++GY
Subjt:  NGL---STPVAGY

AT5G55550.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.4e-2948.08Show/hide
Query:  RGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSE-SN
        R +KIFVGGL + +TE++FKNYF++FG + DVVVM D  T+RPRGFGFITFDS  +VD VL   FHELNG+ VEVKRA+PK+          SP+S   +
Subjt:  RGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSE-SN

Query:  VLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGS-DPYGNWFSPSFGPMASPAAWYG
         L S   Y  G    P  + F  + PG G Y S  P G  FSP  G   +  + +G
Subjt:  VLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGS-DPYGNWFSPSFGPMASPAAWYG

AT5G55550.2 RNA-binding (RRM/RBD/RNP motifs) family protein7.4e-2948.08Show/hide
Query:  RGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSE-SN
        R +KIFVGGL + +TE++FKNYF++FG + DVVVM D  T+RPRGFGFITFDS  +VD VL   FHELNG+ VEVKRA+PK+          SP+S   +
Subjt:  RGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSE-SN

Query:  VLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGS-DPYGNWFSPSFGPMASPAAWYG
         L S   Y  G    P  + F  + PG G Y S  P G  FSP  G   +  + +G
Subjt:  VLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGS-DPYGNWFSPSFGPMASPAAWYG

AT5G55550.3 RNA-binding (RRM/RBD/RNP motifs) family protein7.4e-2948.08Show/hide
Query:  RGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSE-SN
        R +KIFVGGL + +TE++FKNYF++FG + DVVVM D  T+RPRGFGFITFDS  +VD VL   FHELNG+ VEVKRA+PK+          SP+S   +
Subjt:  RGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSE-SN

Query:  VLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGS-DPYGNWFSPSFGPMASPAAWYG
         L S   Y  G    P  + F  + PG G Y S  P G  FSP  G   +  + +G
Subjt:  VLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGS-DPYGNWFSPSFGPMASPAAWYG

AT5G55550.4 RNA-binding (RRM/RBD/RNP motifs) family protein7.4e-2948.08Show/hide
Query:  RGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSE-SN
        R +KIFVGGL + +TE++FKNYF++FG + DVVVM D  T+RPRGFGFITFDS  +VD VL   FHELNG+ VEVKRA+PK+          SP+S   +
Subjt:  RGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSE-SN

Query:  VLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGS-DPYGNWFSPSFGPMASPAAWYG
         L S   Y  G    P  + F  + PG G Y S  P G  FSP  G   +  + +G
Subjt:  VLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGS-DPYGNWFSPSFGPMASPAAWYG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTACGGAAAAGAAACTGTGGAGCTAGCTAGAGATCAAAGAATGAGTAATGGTACTAGGATGGAAGATCAGTTTAGGGGCAGAAAGATTTTTGTTGGAGGATTATC
GGCTGAATTGACTGAAGATGACTTCAAAAATTACTTTGAAAAGTTTGGTCGGGTAACTGACGTAGTCGTGATGCGTGATAGTGTAACTAAACGCCCTAGAGGATTTGGAT
TTATCACGTTTGATTCTGTACAATCTGTTGACTCTGTTCTTCAAAATAACTTTCATGAGTTAAATGGTAGGCGTGTGGAGGTGAAGAGAGCCATCCCCAAAAAGGGGAAC
TACAATGGCGGCCATATTTCCAAAAGCCCTCTTTCTGAAAGCAATGTTCTTCCCTCTTACCCATATTATAGCTGTGGTTATACAGTTTATCCTGGTTTTACACCTTTTCC
ACCTTATGGACCAGGTTTTGGTTTATATGGCTCAGACCCCTATGGGAATTGGTTTTCCCCCAGTTTTGGTCCCATGGCTTCACCAGCTGCATGGTATGGTCCAAATTTCT
TTGGAATGTTTCCTCCACCTCATAAAAATTCTCTAGTTTATCCAACGTATTCAAGCAATGGGCTATCTACTCCGGTGGCTGGATATGAAACTGCTGATGCGAGAAGAAAG
GTTGAGCCCCCCACTCGTGCACAGAAAAATATGTCGGCTGACGCAGTGCCATTTCATGCTAAGGATAGAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTACGGAAAAGAAACTGTGGAGCTAGCTAGAGATCAAAGAATGAGTAATGGTACTAGGATGGAAGATCAGTTTAGGGGCAGAAAGATTTTTGTTGGAGGATTATC
GGCTGAATTGACTGAAGATGACTTCAAAAATTACTTTGAAAAGTTTGGTCGGGTAACTGACGTAGTCGTGATGCGTGATAGTGTAACTAAACGCCCTAGAGGATTTGGAT
TTATCACGTTTGATTCTGTACAATCTGTTGACTCTGTTCTTCAAAATAACTTTCATGAGTTAAATGGTAGGCGTGTGGAGGTGAAGAGAGCCATCCCCAAAAAGGGGAAC
TACAATGGCGGCCATATTTCCAAAAGCCCTCTTTCTGAAAGCAATGTTCTTCCCTCTTACCCATATTATAGCTGTGGTTATACAGTTTATCCTGGTTTTACACCTTTTCC
ACCTTATGGACCAGGTTTTGGTTTATATGGCTCAGACCCCTATGGGAATTGGTTTTCCCCCAGTTTTGGTCCCATGGCTTCACCAGCTGCATGGTATGGTCCAAATTTCT
TTGGAATGTTTCCTCCACCTCATAAAAATTCTCTAGTTTATCCAACGTATTCAAGCAATGGGCTATCTACTCCGGTGGCTGGATATGAAACTGCTGATGCGAGAAGAAAG
GTTGAGCCCCCCACTCGTGCACAGAAAAATATGTCGGCTGACGCAGTGCCATTTCATGCTAAGGATAGAGCTTGAAAGGATCCGTTTTGTACATGGAAACTTGGGCTTTA
TGATTGGATTTGCTCTTGATCTTGTTCTGAGGGCATTTAGCTTGTAAATTCTGTAGATTTGTCCAGTTCTTTCTATTATATTTTTTCTAATCTCTGTTTTTTTTTATCTG
CTTGTGAATTCATGGTTGTGTGGAACACTCAGGCAACTGTTACAGTGGTTTTAGATTTTTTTTAATATCTTTTATTAACATTTGAGACAAGAAGGCTTGGTCTGGTCTGT
AGAAGAGGGTGGGGTCTTCCATATAGCCTAACAAGTTAAGTAGCA
Protein sequenceShow/hide protein sequence
MVYGKETVELARDQRMSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGN
YNGGHISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSLVYPTYSSNGLSTPVAGYETADARRK
VEPPTRAQKNMSADAVPFHAKDRA