CuGenDBv2

Gene ID	CmaCh01G018080
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	F-box protein GID2-like
Genome location	Cma_Chr01:12036445..12036999
RNA-Seq Expression	CmaCh01G018080
Synteny	CmaCh01G018080
Gene Ontology terms	GO:0009740 - gibberellic acid mediated signaling pathway (biological process) GO:0009845 - seed germination (biological process) GO:0010162 - seed dormancy process (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR045118 - F-box only protein FBXO9/FBXO48

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6608444.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-97

98.37

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKRLVPDGDGERKMGKKLRVDSVDCE   GGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

KAG7037780.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.0e-98

98.91

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKRLVPDGDGERKMGKKLRVDSVDCE  GGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

XP_022941417.1 F-box protein GID2-like [Cucurbita moschata]

3.8e-96

97.28

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKRLVPDGDGERKMGKKLRVDSVDCE    GGGGGASDR GFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

XP_022982290.1 F-box protein GID2-like [Cucurbita maxima]

1.5e-100

100

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

XP_023521607.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo]

7.6e-97

97.34

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCE---GGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGN
        MKRLVPDGDGERKMGKKLRVDSVDCE   GGGGGGGGGASDRTGFVNLDDNLLFEV KHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGN
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCE---GGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGN

Query:  QQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASA-SSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        QQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASA SSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  QQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASA-SSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2H5 F-box domain-containing protein

7.7e-79

81.05

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKR+VPDG G+RKMGKK + ++ D     GGGG   SD+TGF+NLDDNLLFEVFKHVDA TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSS--------PWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR
        RSVVLALGGFRRLHSLFIWPLTKPQ+ S+S+S+SSSSSSS         WS FPAMIGSKPP RWGKDEVHLSLSLLSIRYYEKMNFSNR
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSS--------PWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR

A0A6J1FA22 F-box protein GID2-like

2.0e-79

82.97

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKR+VP+G G+RK  KK R  S DC+      GGG SD+TGF+NLDDNLLFEVFKHVDA TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR
        RSVVLALGGFRRLHSLFIWPLTKPQ+ S+S+++SS+SSSSPWS FPAMIGSKPP RWGKDEVHLSLSLLSIRYYEKMNFS+R
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR

A0A6J1FMD6 F-box protein GID2-like

1.8e-96

97.28

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKRLVPDGDGERKMGKKLRVDSVDCE    GGGGGASDR GFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

A0A6J1ILD7 F-box protein GID2-like

4.5e-79

82.07

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKR+VP+G G+RK  KK R  S DC+      GGG SD+TGF+NLDDNLLFEVFKHVDA TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSAS--ASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR
        RSVVLALGGFRRLHSLFIWPLTKPQ+ S+S+S  +SS+SSSSPWS FPAMIGSKPP RWGKDEVHLSLSLLSIRYYEKMNF +R
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSAS--ASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR

A0A6J1J293 F-box protein GID2-like

7.2e-101

100

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

1.5e-26

42.48

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Query:  GASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASAS
        G  ++    +L ++L+FEV +  +A TLA AACVS+ W + AEDERLWE  C R WAN G   +QLR+VVL+LGGFRRLH+++I PL             
Subjt:  GASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASAS

Query:  SSSSSSPW--STFPAMIGSK-PPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
               W  +  P   G + PP R G+D+V LSLSL SI +++ M    +D+
Subjt:  SSSSSSPW--STFPAMIGSK-PPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

Q9LUB6 F-box protein SNE

5.1e-11

29.63

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Query:  VNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPW
        +N   ++L E+ + +D ++L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  VNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPW

Query:  STFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKM
             ++   P   W +D++ LSLSL  + YYE++
Subjt:  STFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKM

Q9STX3 F-box protein GID2

5.4e-45

51.61

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Query:  MKRLVPD----GDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCG
        MKR   D    GD   +  KK++                  +  GF NLD+NL++EV KHVDA TLAM++CVSK WHKTA+DERLWELICTRHW N GCG
Subjt:  MKRLVPD----GDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCG

Query:  NQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR
          QLRSVVLALGGFRRLHSL++WPL+KP                            P  R+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  NQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR

Arabidopsis top hits

e value

%identity

Alignment

AT1G21760.1 F-box protein 7

2.1e-04

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Query:  LDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTG
        L D LLFEVF  +    L  A+CV ++W  T  +   W   C + W   G
Subjt:  LDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTG

AT4G24210.1 F-box family protein

3.8e-46

51.61

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Query:  MKRLVPD----GDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCG
        MKR   D    GD   +  KK++                  +  GF NLD+NL++EV KHVDA TLAM++CVSK WHKTA+DERLWELICTRHW N GCG
Subjt:  MKRLVPD----GDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCG

Query:  NQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR
          QLRSVVLALGGFRRLHSL++WPL+KP                            P  R+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  NQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR

AT5G48170.1 F-box family protein

3.6e-12

29.63

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Query:  VNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPW
        +N   ++L E+ + +D ++L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  VNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPW

Query:  STFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKM
             ++   P   W +D++ LSLSL  + YYE++
Subjt:  STFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKM

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAGCGACTAGTTCCCGATGGCGATGGGGAGCGGAAGATGGGGAAAAAACTCAGGGTGGACTCTGTGGATTGTGAAGGGGGAGGAGGAGGAGGAGGAGGAGGCGCCTC
CGACAGAACTGGGTTTGTCAATTTGGATGATAATTTGCTGTTTGAGGTTTTTAAGCATGTGGATGCGACGACTCTGGCTATGGCGGCGTGTGTCAGCAAGCAATGGCACA
AAACGGCGGAAGATGAGCGGCTTTGGGAGCTGATCTGTACCAGACACTGGGCCAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTAGCCCTCGGTGGCTTC
CGTCGCCTCCACTCGCTCTTCATCTGGCCTCTTACCAAGCCCCAAGCCCCCTCCACATCTGCCTCAGCTTCCTCCTCATCGTCGTCGTCGCCTTGGTCTACGTTTCCGGC
GATGATTGGGTCGAAGCCACCGACCCGTTGGGGGAAGGATGAGGTCCATCTCTCGCTCTCACTTCTCTCGATTCGGTACTACGAGAAGATGAATTTCAGCAACAGAGACG
AATGA

mRNA sequence

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Protein sequence

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MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGGGGGASDRTGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGF
RRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

CmaCh01G018080 (gene) of Cucurbita maxima (Rimu) v1.1 genome