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CmaCh01G018330 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh01G018330
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionprotein ROOT INITIATION DEFECTIVE 3
Genome locationCma_Chr01:12128277..12131936
RNA-Seq ExpressionCmaCh01G018330
SyntenyCmaCh01G018330
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0030174 - regulation of DNA-dependent DNA replication initiation (biological process)
GO:0005656 - nuclear pre-replicative complex (cellular component)
GO:0097344 - Rix1 complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7037821.1 Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. argyrosperma]7.2e-1386Show/hide
Query:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
        GKLLRNIIF  IIDAIA+ P EHV  GGGRDGKIYTAALNAKSPSSSDYG
Subjt:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
XP_022151059.1 protein ROOT INITIATION DEFECTIVE 3-like [Momordica charantia]9.3e-1384Show/hide
Query:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
        GKLLRNIIF  I+DAIA+ P EHV  GGGRDGKIYTAALNAKSPSSSDYG
Subjt:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
XP_022941447.1 protein ROOT INITIATION DEFECTIVE 3 [Cucurbita moschata]7.2e-1386Show/hide
Query:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
        GKLLRNIIF  IIDAIA+ P EHV  GGGRDGKIYTAALNAKSPSSSDYG
Subjt:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
XP_022982251.1 protein ROOT INITIATION DEFECTIVE 3 [Cucurbita maxima]7.2e-1386Show/hide
Query:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
        GKLLRNIIF  IIDAIA+ P EHV  GGGRDGKIYTAALNAKSPSSSDYG
Subjt:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
XP_023521513.1 protein ROOT INITIATION DEFECTIVE 3 [Cucurbita pepo subsp. pepo]7.2e-1386Show/hide
Query:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
        GKLLRNIIF  IIDAIA+ P EHV  GGGRDGKIYTAALNAKSPSSSDYG
Subjt:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
TrEMBL top hitse value%identityAlignment
A0A0A0KZT0 WD_REPEATS_REGION domain-containing protein1.3e-1284Show/hide
Query:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
        GKLLRNIIF  IIDAIA+ P EHV  GGGRDGKIYTAALNAK PSSSDYG
Subjt:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
A0A5D3D9F7 Protein ROOT INITIATION DEFECTIVE 31.3e-1284Show/hide
Query:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
        GKLLRNIIF  IIDAIA+ P EHV  GGGRDGKIYTAALNAK PSSSDYG
Subjt:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
A0A6J1DDG0 protein ROOT INITIATION DEFECTIVE 3-like4.5e-1384Show/hide
Query:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
        GKLLRNIIF  I+DAIA+ P EHV  GGGRDGKIYTAALNAKSPSSSDYG
Subjt:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
A0A6J1FMG7 protein ROOT INITIATION DEFECTIVE 33.5e-1386Show/hide
Query:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
        GKLLRNIIF  IIDAIA+ P EHV  GGGRDGKIYTAALNAKSPSSSDYG
Subjt:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
A0A6J1IYT8 protein ROOT INITIATION DEFECTIVE 33.5e-1386Show/hide
Query:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
        GKLLRNIIF  IIDAIA+ P EHV  GGGRDGKIYTAALNAKSPSSSDYG
Subjt:  GKLLRNIIF-LIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCCGTTGCCGCGCTCATACTTGCTCCCGCTCATCAGTCCTCTTTCGATAACGAATGCCATGTGCGATATATCAAATGTGTACAGTATTCCAAATATGCAC
ACTAGGTGTGGAGCTTATGGGAAACTATTAAGAAATATCATATTTTTAATCATTGATGCAATTGCTATGGGTCCCGATGAACATGTCCTCAAGGGTGGTGGTAGA
GATGGGAAAATATACACTGCTGCGCTCAATGCTAAAAGCCCATCCAGCAGTGATTATGGTTGCATATTCTCGGCTCATCGTCAAATCAGAGCATTTTACATGTTT
CTCACGCGAAGAGCTTGCGTGCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCCGTTGCCGCGCTCATACTTGCTCCCGCTCATCAGTCCTCTTTCGATAACGAATGCCATGTGCGATATATCAAATGTGTACAGTATTCCAAATATGCAC
ACTAGGTGTGGAGCTTATGGGAAACTATTAAGAAATATCATATTTTTAATCATTGATGCAATTGCTATGGGTCCCGATGAACATGTCCTCAAGGGTGGTGGTAGA
GATGGGAAAATATACACTGCTGCGCTCAATGCTAAAAGCCCATCCAGCAGTGATTATGGTTGCATATTCTCGGCTCATCGTCAAATCAGAGCATTTTACATGTTT
CTCACGCGAAGAGCTTGCGTGCAGTAA
Protein sequenceShow/hide protein sequence
MLPLPRSYLLPLISPLSITNAMCDISNVYSIPNMHTRCGAYGKLLRNIIFLIIDAIAMGPDEHVLKGGGRDGKIYTAALNAKSPSSSDYGCIFSAHRQIRAFYMF
LTRRACVQ