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CmaCh02G004110 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh02G004110
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionmediator of RNA polymerase II transcription subunit 32-like
Genome locationCma_Chr02:2070607..2071089
RNA-Seq ExpressionCmaCh02G004110
SyntenyCmaCh02G004110
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009631 - cold acclimation (biological process)
GO:0010150 - leaf senescence (biological process)
GO:0048364 - root development (biological process)
GO:0016592 - mediator complex (cellular component)
InterPro domainsIPR033244 - Mediator of RNA polymerase II transcription subunit 32


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605089.1 Mediator of RNA polymerase II transcription subunit 32, partial [Cucurbita argyrosperma subsp. sororia]2.5e-6794.3Show/hide
Query:  RYSDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTT
        RYSDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQA AAAT++
Subjt:  RYSDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTT

Query:  GLPSISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ
        GLP ISAIRLEQMSKAVRWLVIELQHGSG    A+ASASAHSHSSAPFDARFSEDTTQ
Subjt:  GLPSISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ

KAG7035096.1 Mediator of RNA polymerase II transcription subunit 32, partial [Cucurbita argyrosperma subsp. argyrosperma]8.4e-6893.12Show/hide
Query:  MYRYSDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAAT
        ++RYSDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQA AAAT
Subjt:  MYRYSDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAAT

Query:  TTGLPSISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ
        ++GLP ISAIRLEQMSKAVRWLVIELQHGSG    A+ASASAHSHSSAPFDARFSEDTTQ
Subjt:  TTGLPSISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ

XP_022948111.1 mediator of RNA polymerase II transcription subunit 32-like [Cucurbita moschata]4.3e-6493.51Show/hide
Query:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTTGLPS
        MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQA AAAT++ LP 
Subjt:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTTGLPS

Query:  ISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ
        ISAIRLEQMSKAVRWLVIELQHGSG    A+ASASAHSHSSAPFDARFSEDTTQ
Subjt:  ISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ

XP_023007274.1 mediator of RNA polymerase II transcription subunit 32-like [Cucurbita maxima]4.3e-72100Show/hide
Query:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTTGLPS
        MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTTGLPS
Subjt:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTTGLPS

Query:  ISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ
        ISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ
Subjt:  ISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ

XP_023534665.1 mediator of RNA polymerase II transcription subunit 32-like [Cucurbita pepo subsp. pepo]3.3e-6493.51Show/hide
Query:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTTGLPS
        MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQA AAAT++GLP 
Subjt:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTTGLPS

Query:  ISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ
        ISAIRLEQMSKAVRWLVIELQHGSG    A+ASASAHSHS APFDARFSEDTTQ
Subjt:  ISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ

TrEMBL top hitse value%identityAlignment
A0A6J1FUB1 mediator of RNA polymerase II transcription subunit 32-like4.4e-6288.96Show/hide
Query:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTTGLPS
        MDSLVDSLNNAYQEFV+GAA+VLEANE SGAQKTAATDAALENFKQKWELF VACDQAEEFVESVKQRIGSECL+DEATGSL+ KSGQ  AAATTTGLP 
Subjt:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTTGLPS

Query:  ISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ
        ISA+RLEQMSKAVRWLVIELQHGSGA A+A+ASASAHSH SAPFDARF+ED TQ
Subjt:  ISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ

A0A6J1G8D0 mediator of RNA polymerase II transcription subunit 32-like2.1e-6493.51Show/hide
Query:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTTGLPS
        MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQA AAAT++ LP 
Subjt:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTTGLPS

Query:  ISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ
        ISAIRLEQMSKAVRWLVIELQHGSG    A+ASASAHSHSSAPFDARFSEDTTQ
Subjt:  ISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ

A0A6J1JEJ1 mediator of RNA polymerase II transcription subunit 32-like isoform X18.8e-6389.1Show/hide
Query:  SDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTTGL
        SDMDSLVDSLNNAYQEFV+GAA+VLEANE SGAQKTAATDAALENFKQKWELF VACDQAEEFVESVKQRIGSECL+DEATGSL+ KSGQ  AAATTTGL
Subjt:  SDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTTGL

Query:  PSISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ
        P ISAIRLEQMSKAVRWLVIELQHGSGA   A+ASASAHSH SAPFDARF+ED TQ
Subjt:  PSISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ

A0A6J1JH28 mediator of RNA polymerase II transcription subunit 32-like isoform X21.3e-6188.96Show/hide
Query:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTTGLPS
        MDSLVDSLNNAYQEFV+GAA+VLEANE SGAQKTAATDAALENFKQKWELF VACDQAEEFVESVKQRIGSECL+DEATGSL+ KSGQ  AAATTTGLP 
Subjt:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTTGLPS

Query:  ISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ
        ISAIRLEQMSKAVRWLVIELQHGSGA   A+ASASAHSH SAPFDARF+ED TQ
Subjt:  ISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ

A0A6J1L2I3 mediator of RNA polymerase II transcription subunit 32-like2.1e-72100Show/hide
Query:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTTGLPS
        MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTTGLPS
Subjt:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTTGLPS

Query:  ISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ
        ISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ
Subjt:  ISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ

SwissProt top hitse value%identityAlignment
Q84VW5 Mediator of RNA polymerase II transcription subunit 324.0e-4466.24Show/hide
Query:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATG-SLSSKSGQAVAAAT--TTG
        MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELF VACDQAEEFVESVKQRIGSECL+DEATG + ++  GQA AA T   T 
Subjt:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATG-SLSSKSGQAVAAAT--TTG

Query:  LPSISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ
        LP ISA+RLEQMS+AVRWLV+ELQ GSG      A  S HS SS  FD+RFSED+TQ
Subjt:  LPSISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ

Arabidopsis top hitse value%identityAlignment
AT1G11760.1 MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2.8e-4566.24Show/hide
Query:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATG-SLSSKSGQAVAAAT--TTG
        MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELF VACDQAEEFVESVKQRIGSECL+DEATG + ++  GQA AA T   T 
Subjt:  MDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATG-SLSSKSGQAVAAAT--TTG

Query:  LPSISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ
        LP ISA+RLEQMS+AVRWLV+ELQ GSG      A  S HS SS  FD+RFSED+TQ
Subjt:  LPSISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATAGGTATTCTGATATGGACAGCCTAGTGGACTCTTTAAATAACGCATATCAGGAGTTTGTTGCTGGAGCAGCTAGCGTCCTTGAAGCAAATGAAACCTCT
GGGGCCCAGAAGACAGCAGCAACAGATGCTGCTCTTGAGAATTTTAAACAGAAATGGGAGCTATTCATGGTTGCTTGTGATCAAGCAGAGGAGTTTGTGGAGTCT
GTGAAGCAAAGGATAGGATCAGAGTGCCTGATTGATGAGGCGACTGGTTCCCTGTCCAGCAAGTCTGGGCAGGCGGTCGCCGCCGCCACGACGACTGGCCTTCCT
TCAATCAGTGCCATTCGGCTCGAACAGATGAGCAAAGCTGTGAGATGGCTTGTGATTGAGTTGCAGCATGGCTCCGGAGCTCCTGCTTCTGCTTCTGCTTCTGCT
TCAGCCCACTCCCACTCTTCCGCTCCTTTTGATGCTCGATTTAGCGAGGATACAACCCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTATAGGTATTCTGATATGGACAGCCTAGTGGACTCTTTAAATAACGCATATCAGGAGTTTGTTGCTGGAGCAGCTAGCGTCCTTGAAGCAAATGAAACCTCT
GGGGCCCAGAAGACAGCAGCAACAGATGCTGCTCTTGAGAATTTTAAACAGAAATGGGAGCTATTCATGGTTGCTTGTGATCAAGCAGAGGAGTTTGTGGAGTCT
GTGAAGCAAAGGATAGGATCAGAGTGCCTGATTGATGAGGCGACTGGTTCCCTGTCCAGCAAGTCTGGGCAGGCGGTCGCCGCCGCCACGACGACTGGCCTTCCT
TCAATCAGTGCCATTCGGCTCGAACAGATGAGCAAAGCTGTGAGATGGCTTGTGATTGAGTTGCAGCATGGCTCCGGAGCTCCTGCTTCTGCTTCTGCTTCTGCT
TCAGCCCACTCCCACTCTTCCGCTCCTTTTGATGCTCGATTTAGCGAGGATACAACCCAATAG
Protein sequenceShow/hide protein sequence
MYRYSDMDSLVDSLNNAYQEFVAGAASVLEANETSGAQKTAATDAALENFKQKWELFMVACDQAEEFVESVKQRIGSECLIDEATGSLSSKSGQAVAAATTTGLP
SISAIRLEQMSKAVRWLVIELQHGSGAPASASASASAHSHSSAPFDARFSEDTTQ