CuGenDBv2

Gene ID	CmaCh02G004780
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	30S ribosomal protein S5
Genome location	Cma_Chr02:2518319..2520357
RNA-Seq Expression	CmaCh02G004780
Synteny	CmaCh02G004780
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005763 - mitochondrial small ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004386 - helicase activity (molecular function)
InterPro domains	IPR000851 - Ribosomal protein S5 IPR005324 - Ribosomal protein S5, C-terminal IPR014721 - Ribosomal protein S5 domain 2-type fold, subgroup IPR020568 - Ribosomal protein S5 domain 2-type fold

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605165.1 hypothetical protein SDJN03_02482, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-39

97.67

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Query:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV
        AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPA TTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNA+
Subjt:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV

KAG7035156.1 rpsE [Cucurbita argyrosperma subsp. argyrosperma]

1.8e-39

97.67

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Query:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV
        AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPA TTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNA+
Subjt:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV

XP_022947619.1 uncharacterized protein LOC111451428 [Cucurbita moschata]

1.8e-39

97.67

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Query:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV
        AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPA TTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNA+
Subjt:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV

XP_023006975.1 uncharacterized protein LOC111499608 [Cucurbita maxima]

2.1e-40

98.84

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Query:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV
        AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNA+
Subjt:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV

XP_023533655.1 uncharacterized protein LOC111795451 [Cucurbita pepo subsp. pepo]

1.8e-39

97.67

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Query:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV
        AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPA TTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNA+
Subjt:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1FXC7 DEAD-box ATP-dependent RNA helicase 42

4.4e-39

94.19

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Query:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV
        AYEKCFQNLHYVERHEEHTIAHA+QTEYKKTKVYLWPA T+TGMKAGKTVQTVLNLAGFKN+KSKVVGSRNPHNTLKALFKALNA+
Subjt:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV

A0A6J1G7C4 uncharacterized protein LOC111451428

8.8e-40

97.67

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Query:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV
        AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPA TTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNA+
Subjt:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV

A0A6J1KZ96 uncharacterized protein LOC111499608

1.0e-40

98.84

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Query:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV
        AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNA+
Subjt:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV

A0A6P5YZZ5 uncharacterized protein LOC111296212 isoform X2

3.3e-39

94.19

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Query:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV
        AYEKCFQNLHY+ERHEEHTIAHAIQT YKKTKVYLWPAPTTTGMKAG+TVQT+LNLAGFKNIKSKVVGSRNPHNT+KALFKALNAV
Subjt:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV

A0A6P5Z0L9 uncharacterized protein LOC111296212 isoform X1

3.3e-39

94.19

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Query:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV
        AYEKCFQNLHY+ERHEEHTIAHAIQT YKKTKVYLWPAPTTTGMKAG+TVQT+LNLAGFKNIKSKVVGSRNPHNT+KALFKALNAV
Subjt:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV

SwissProt top hits

e value

%identity

Alignment

A5USH2 30S ribosomal protein S5

9.1e-10

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Query:  TIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV
        TI H +Q E+  +KV L PA   TG+ AG+ V+ VL +AG K++ SK  GS NP N +KA FKAL+A+
Subjt:  TIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV

A9WH83 30S ribosomal protein S5

4.5e-09

43.59

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Query:  TIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAVNRDSKGYSRK
        T+ H + T++  TKV L PA   TG+ AG+ V+ V+  AG K++ SKV GS NP N +KA FKAL+ +    +  SR+
Subjt:  TIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAVNRDSKGYSRK

B4RT45 30S ribosomal protein S5

1.7e-08

38.46

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Query:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAVNRDSK
        A EK  +N+  V+ +  HT+ H I+  +  +KVY+ PA   TG+ AG  ++ VL +AG +N+ SK  GS NP N ++A   AL  +N  +K
Subjt:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAVNRDSK

B8G6Q8 30S ribosomal protein S5

3.5e-09

51.52

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Query:  TIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALN
        TI H I T++  TKV L PA   TG+ AG+ V+ V+  AG K++ SKV GS NP N +KA FKAL+
Subjt:  TIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALN

B9LJE9 30S ribosomal protein S5

4.5e-09

43.59

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Query:  TIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAVNRDSKGYSRK
        T+ H + T++  TKV L PA   TG+ AG+ V+ V+  AG K++ SKV GS NP N +KA FKAL+ +    +  SR+
Subjt:  TIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAVNRDSKGYSRK

Arabidopsis top hits

e value

%identity

Alignment

AT1G64880.1 Ribosomal protein S5 family protein

6.2e-38

84.88

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Query:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV
        AYEKCFQNLHYVERHEEHTIAHAIQT YKKTK+YLWPAPTTTGMKAG+ V+T+L LAGFKNIKSKV+GSRN +NT+KA+ KALNAV
Subjt:  AYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAV

AT2G33800.1 Ribosomal protein S5 family protein

2.0e-04

32.93

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Query:  QNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAVNR
        +N+  V   +  T  H  + +Y   KV L PA   TG+ AG  V+ VL +AG +N   K +GS N  N  +A   A+  + +
Subjt:  QNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAVNR

Sequences

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CDS sequence

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mRNA sequence

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ATGGCATATGAGAAATGTTTCCAAAATCTTCATTATGTGGAACGCCATGAGGAACACACAATTGCACATGCAATACAGACGGAATACAAAAAAACAAAGGTATAT
CTTTGGCCAGCACCAACTACGACAGGCATGAAAGCAGGGAAAACTGTTCAAACTGTTTTGAATCTGGCAGGTTTTAAAAATATCAAATCTAAGGTTGTTGGCTCA
AGGAACCCCCACAACACTCTGAAGGCCCTCTTCAAAGCTCTGAATGCAGTAAATCGAGACTCCAAAGGATATTCAAGAAAAGTTCGGGCGGACTGTTGTCGAGAA
GTATTTGCTATAATAGGAGGTGCAAATGTAGCACAATCAGTCCAAAGATCCATGTGTTTGACAATGATGCGTAAAGTGAGATATGTATAGAGGAATTTGATCTTA
GTGGCTGTCCATTTTCTTCTGAAAGTTCATTTATATGTTAACGTGGGAATAGAGTATTGATATAATCACTTAGCTTTAACTTTATGGTATTTGTGGGTTACACGA
GTTTGGAATATATCAGACAGCTGTTTTGCACACTTCTTTTGATTTTGGAATGGAATTCTTAGGGACTTTGTATGACTATTATGCTCATCTCTAAATCTGAC

Protein sequence

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MAYEKCFQNLHYVERHEEHTIAHAIQTEYKKTKVYLWPAPTTTGMKAGKTVQTVLNLAGFKNIKSKVVGSRNPHNTLKALFKALNAVNRDSKGYSRKVRADCCRE
VFAIIGGANVAQSVQRSMCLTMMRKVRYV

CmaCh02G004780 (gene) of Cucurbita maxima (Rimu) v1.1 genome