CuGenDBv2

Gene ID	CmaCh02G004960
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	Cma_Chr02:2646248..2646865
RNA-Seq Expression	CmaCh02G004960
Synteny	CmaCh02G004960
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0007015 - actin filament organization (biological process) GO:0034645 - cellular macromolecule biosynthetic process (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domains	IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF3643966.1 Pleiotropic drug resistance protein 1 [Capsicum annuum]

2.2e-73

77.18

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Query:  MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVA
        +IRLTLSRNVAFNI+KEKTTSDL+KALSNMYEKPSA NKVYLMRRLFNLQM E GSV DHINEFNMIVSQL SV+INFEDEIK LILMSSLPE   T+V 
Subjt:  MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVA

Query:  AISSSRGSDKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHKSGDD
        AISSS GS+KLKFDKIRDVV S+S RKREIG SS SALSVD+RGR + +  N   RSKSKNR KSP + NVTCWNCGEK HF T C +PK+ +N KSGDD
Subjt:  AISSSRGSDKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPN-KGRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHKSGDD

Query:  DDSINS
        +DS+NS
Subjt:  DDSINS

KAG7011443.1 hypothetical protein SDJN02_26349, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.5e-56

65.52

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Query:  MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVA
        +IRLTLSRN AFNIIKEKTTSDL+KALSNMYEK SAMNKVYLMRRLFNLQMSEGGS+ D+INEFNMIVS+LS VEINF+DEIK LILMSSLPESWDTVVA
Subjt:  MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVA

Query:  AISSSRGSDKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPNKGRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHKSGDDD
        AI+SSRGSDKLKFD+IRD+VL ES R R+ G+SS  ALS D                                           CT+ K+KQNHKS DDD
Subjt:  AISSSRGSDKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPNKGRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHKSGDDD

Query:  DSI
        DSI
Subjt:  DSI

VFQ59121.1 unnamed protein product [Cuscuta campestris]

9.2e-59

77.91

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Query:  MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVA
        MIRLTL++NVAFNI+KE TT+ LMKALSN+YEKPSAMNKVYLMRRLFNLQM E GSV +HIN+FNMIVSQL  VEINFEDEIK LIL+SS+PESWD VVA
Subjt:  MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVA

Query:  AISSSRGSDKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPNK-GRSKSKNREKSPNRPNVT
        AISSSRGS+KL+FD+IRDVVLSES RKRE+ +SS SALSVD+RGR K K  ++ GRSKSKNR KSPNR  +T
Subjt:  AISSSRGSDKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPNK-GRSKSKNREKSPNRPNVT

VFQ69914.1 unnamed protein product [Cuscuta campestris]

2.3e-62

77.65

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Query:  MNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVVLSESTRKREIGNSSSS
        MNKVYLMRRLFNLQM E GSV +HIN+FNMIVSQL SVEINFEDEIK LIL+SS+PESWDTVVAAISSSRGS+KL+FD+IRDVVLSES RKRE+G+SS S
Subjt:  MNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVVLSESTRKREIGNSSSS

Query:  ALSVDQRGRSKPKSPNK-GRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHKSGDDDDSINS
        ALSVD++GRSK K  ++ GRSKSKNR KSPNR N+TCWNCG+K HF+  C +PK+KQN KSGDD DS+NS
Subjt:  ALSVDQRGRSKPKSPNK-GRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHKSGDDDDSINS

VFR00719.1 unnamed protein product [Cuscuta campestris]

8.3e-76

78.79

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Query:  NVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGS
        NVAFNI+KE TT+ LMKALSNMYEKPSAMNKVYLMRRLFNLQM E GSV +HIN+FNMIVSQL SVEINFEDEIK LIL+SS+ ESWDTVVAAISSSRGS
Subjt:  NVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGS

Query:  DKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPNK-GRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHKSGDDDDSINS
        +KL+FD+IRDVVLSES RKRE+G+SS SALSVDQ+GRSK K  ++ GRSKSKNR KSPNR N+TCWNCG+K HF+  C +PK+KQN KSGDD DS+NS
Subjt:  DKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPNK-GRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHKSGDDDDSINS

TrEMBL top hits

e value

%identity

Alignment

A0A484K039 Uncharacterized protein

4.4e-59

77.91

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Query:  MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVA
        MIRLTL++NVAFNI+KE TT+ LMKALSN+YEKPSAMNKVYLMRRLFNLQM E GSV +HIN+FNMIVSQL  VEINFEDEIK LIL+SS+PESWD VVA
Subjt:  MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVA

Query:  AISSSRGSDKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPNK-GRSKSKNREKSPNRPNVT
        AISSSRGS+KL+FD+IRDVVLSES RKRE+ +SS SALSVD+RGR K K  ++ GRSKSKNR KSPNR  +T
Subjt:  AISSSRGSDKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPNK-GRSKSKNREKSPNRPNVT

A0A484KZ82 CCHC-type domain-containing protein

1.1e-62

77.65

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Query:  MNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVVLSESTRKREIGNSSSS
        MNKVYLMRRLFNLQM E GSV +HIN+FNMIVSQL SVEINFEDEIK LIL+SS+PESWDTVVAAISSSRGS+KL+FD+IRDVVLSES RKRE+G+SS S
Subjt:  MNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVVLSESTRKREIGNSSSS

Query:  ALSVDQRGRSKPKSPNK-GRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHKSGDDDDSINS
        ALSVD++GRSK K  ++ GRSKSKNR KSPNR N+TCWNCG+K HF+  C +PK+KQN KSGDD DS+NS
Subjt:  ALSVDQRGRSKPKSPNK-GRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHKSGDDDDSINS

A0A484NK44 CCHC-type domain-containing protein

4.0e-76

78.79

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Query:  NVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGS
        NVAFNI+KE TT+ LMKALSNMYEKPSAMNKVYLMRRLFNLQM E GSV +HIN+FNMIVSQL SVEINFEDEIK LIL+SS+ ESWDTVVAAISSSRGS
Subjt:  NVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGS

Query:  DKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPNK-GRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHKSGDDDDSINS
        +KL+FD+IRDVVLSES RKRE+G+SS SALSVDQ+GRSK K  ++ GRSKSKNR KSPNR N+TCWNCG+K HF+  C +PK+KQN KSGDD DS+NS
Subjt:  DKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPNK-GRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHKSGDDDDSINS

A0A5B7BAK4 Uncharacterized protein

2.5e-54

58.46

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Query:  MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVA
        ++RLTL+RNVAFNI KEKTT+ LM ALSNMYEKPSA NKVYLMRRLFNL+MSEG SV +H+NEFN++ +QLSSVEI F+DEI+ LIL+SSLPESW+  V 
Subjt:  MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVA

Query:  AISSSRGSDKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPNKGRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHK
        A+SSS G+ KLK+D +RD++LSE  R+RE G SS SAL+V+ RGR+  ++ +  RS+S+  +    +    CWNCG+  H +  C  PK+++  K
Subjt:  AISSSRGSDKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPNKGRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHK

A0A6A3BK95 Uncharacterized protein

9.6e-54

60.73

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Query:  MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVA
        +IRLTLSRNVAFNI KEKTT+ LM ALS+MYEKPSA NKV+LMRRLFNL+M+EG SV  H+NE N I +QLSSVEI F+DE++ LIL+SSLP+SW+  V 
Subjt:  MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVA

Query:  AISSSRGSDKLKFDKIRDVVLSESTRKREIGN-SSSSALSVDQRGRSKPKSPNKGRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKR
        A+SSS G++KLKFD +RD+VLSE  R+RE G  S+SSAL  + RGR+  ++ N+GRSKS+  +      + TC+NCG+K HF+  C  PK+
Subjt:  AISSSRGSDKLKFDKIRDVVLSESTRKREIGN-SSSSALSVDQRGRSKPKSPNKGRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKR

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.1e-22

35.61

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Query:  IRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAA
        IRL LS +V  NII E T   +   L ++Y   +  NK+YL ++L+ L MSEG + + H+N FN +++QL+++ +  E+E K ++L++SLP S+D +   
Subjt:  IRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAA

Query:  ISSSRGSDKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPNK-----GRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHKS
        I   + + +LK D    ++L+E  RK+    +   AL  + RGRS  +S N       R KSKNR KS  R    C+NC +  HF+  C  P++ +   S
Subjt:  ISSSRGSDKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPNK-----GRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHKS

Query:  GDDDD
        G  +D
Subjt:  GDDDD

Arabidopsis top hits

e value

%identity

Alignment

AT3G29785.1 unknown protein

1.6e-05

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Query:  MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKV
        +IRLT+S+N+A N+ KEK+   LMK LS++Y+KPS  N V
Subjt:  MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKV

AT4G35820.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

9.0e-04

26.6

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Query:  MYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVVLSE
        M +  S    +YL +RL  L++ E   ++ HIN F+ +V +  SV++  E++ K +IL+ SL     T+  ++     S +   ++  +V+  E
Subjt:  MYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSSRGSDKLKFDKIRDVVLSE

Sequences

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CDS sequence

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ATGATCCGGTTGACGCTATCCAGAAACGTGGCTTTTAATATCATCAAGGAGAAGACAACGTCAGATCTGATGAAGGCGCTGTCGAATATGTACGAAAAACCGTCG
GCTATGAACAAGGTGTATTTGATGCGAAGATTGTTCAACCTACAGATGTCTGAAGGTGGATCTGTTGTTGATCATATAAATGAATTCAATATGATCGTAAGTCAA
CTGAGTTCGGTGGAAATTAATTTCGAGGATGAAATTAAAACATTGATTTTGATGTCATCTTTACCCGAGTCGTGGGATACTGTTGTTGCCGCAATCAGCAGTTCG
CGAGGATCTGATAAACTGAAGTTTGATAAAATTCGAGATGTAGTTCTTAGCGAAAGTACTCGCAAAAGAGAAATTGGAAATTCATCTAGTAGTGCTCTCAGTGTT
GACCAACGGGGAAGAAGTAAACCGAAGAGCCCAAACAAAGGGCGATCAAAATCAAAGAACCGAGAAAAATCTCCAAATAGACCAAACGTAACGTGTTGGAATTGT
GGAGAAAAAGTTCACTTTCGGACAGGTTGTACAAGACCAAAGAGGAAGCAGAATCACAAATCTGGAGATGACGATGATTCTATAAATTCATAA

mRNA sequence

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Protein sequence

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MIRLTLSRNVAFNIIKEKTTSDLMKALSNMYEKPSAMNKVYLMRRLFNLQMSEGGSVVDHINEFNMIVSQLSSVEINFEDEIKTLILMSSLPESWDTVVAAISSS
RGSDKLKFDKIRDVVLSESTRKREIGNSSSSALSVDQRGRSKPKSPNKGRSKSKNREKSPNRPNVTCWNCGEKVHFRTGCTRPKRKQNHKSGDDDDSINS

CmaCh02G004960 (gene) of Cucurbita maxima (Rimu) v1.1 genome