; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh02G007710 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh02G007710
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionMitochondrial 28S Ribosomal protein
Genome locationCma_Chr02:4616682..4619228
RNA-Seq ExpressionCmaCh02G007710
SyntenyCmaCh02G007710
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR032053 - Mitochondrial 28S ribosomal protein S34


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605433.1 hypothetical protein SDJN03_02750, partial [Cucurbita argyrosperma subsp. sororia]1.1e-7797.44Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG
        MAVANRTTISRALDFSRLASSFIRNFSTSTLS SSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAK HWDEISYQITKINLYKNGTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS
        IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRS ENEPTTMTNLGESNPSAEVQ+S
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS

XP_022947647.1 uncharacterized protein LOC111451448 [Cucurbita moschata]1.1e-7797.44Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG
        MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAK HWDEISYQITKINLYKNGTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS
        IAHKNGAPIAEAPKKISGVHKRCWKYIPSL RS ENEPTTMTNLGESNPSAEVQ+S
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS

XP_023007567.1 uncharacterized protein LOC111500023 [Cucurbita maxima]7.2e-80100Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG
        MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS
        IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS

XP_023532313.1 uncharacterized protein LOC111794505 [Cucurbita pepo subsp. pepo]2.3e-7898.08Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG
        MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAK HWDEISYQITKINLYKNGTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS
        IAHKNGAPIAEAPKKISGVHKRCWKYIPSL RSSENEPTTMTNLGESNPSAE QTS
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS

XP_038900676.1 uncharacterized protein LOC120087826 [Benincasa hispida]5.2e-6282.47Show/hide
Query:  VANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWGIA
        VANRT ISRALDFSRL+S+FIR FSTS+ STSSS+P+AS A++KNKRRKKKKNLFEV+QFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWGIA
Subjt:  VANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWGIA

Query:  HKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS
        HK+G PIAEAPKKISGVHKRCWKYI SL RS           GESNPSAEVQTS
Subjt:  HKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS

TrEMBL top hitse value%identityAlignment
A0A1S3CKN2 uncharacterized protein LOC1035020492.6e-5978.85Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG
        MAVANRT ISRALDFSRL+SSFIR F++S+ STSSS+P+AS ++S+ KRRKKKKNLFEVIQFLPNWGVGYHVAK+HWDEISYQITKINLYK+GTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS
        IAHKNG PI EAPKKISGVHKRCWKYI SL R           LGES  SAEVQTS
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS

A0A5A7V0Y6 Uncharacterized protein2.6e-5978.85Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG
        MAVANRT ISRALDFSRL+SSFIR F++S+ STSSS+P+AS ++S+ KRRKKKKNLFEVIQFLPNWGVGYHVAK+HWDEISYQITKINLYK+GTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS
        IAHKNG PI EAPKKISGVHKRCWKYI SL R           LGES  SAEVQTS
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS

A0A6J1D4Z3 uncharacterized protein LOC1110169882.6e-5978.85Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG
        M+VANR  I+RALDFS+L+S+FIR FSTS+ STSSS+P+ASAA+S  KRRKKKKNLFEV+QFLP WGVGYHVAKAHWDEISYQITKINLYKNG HGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS
        IAHK+G PIAEAPKKISGVHKRCW+YI  LS + E+ PTT  ++ ESNPSAEVQTS
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS

A0A6J1G714 uncharacterized protein LOC1114514485.5e-7897.44Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG
        MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAK HWDEISYQITKINLYKNGTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS
        IAHKNGAPIAEAPKKISGVHKRCWKYIPSL RS ENEPTTMTNLGESNPSAEVQ+S
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS

A0A6J1KZ28 uncharacterized protein LOC1115000233.5e-80100Show/hide
Query:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG
        MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG
Subjt:  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS
        IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G52370.1 unknown protein2.3e-3961.94Show/hide
Query:  TTISRALDFS------RLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG
        T I+RA+  +      RL+ + +RNFS +  S + S  S     SK KRR KKKNL EV QFLPNWG+GYH+AKAHW+ ISY+ITKINLYK+G HGKAWG
Subjt:  TTISRALDFS------RLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWG

Query:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSS
        I HK+G   AEAPKKISGVHKRCWKYIP+LS+++
Subjt:  IAHKNGAPIAEAPKKISGVHKRCWKYIPSLSRSS

AT5G58990.1 unknown protein5.9e-4061.6Show/hide
Query:  LASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKIS
        L+ S +RNFS +  + S+      ++ S   +R+KKKNL EV QFLPNWG+GYH+AKAHW+ ISY+ITKINLYK+G HGKAWGI HK+G   AEAPKKIS
Subjt:  LASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKIS

Query:  GVHKRCWKYIPSLSRSSENEPTTMT
        GVHKRCWKYIP+LS+++   P T T
Subjt:  GVHKRCWKYIPSLSRSSENEPTTMT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTCGCCAACAGAACTACGATCAGTCGAGCCCTAGATTTCTCCAGGCTAGCTTCGAGCTTTATCAGAAACTTCAGCACTTCTACGCTGTCAACCTCTTCTTCGGA
TCCCAGTGCCTCGGCTGCTGCGAGTAAAAACAAGCGGAGGAAGAAGAAGAAGAACCTGTTCGAAGTGATTCAGTTTTTGCCCAACTGGGGAGTAGGATACCATGTCGCCA
AGGCTCACTGGGATGAAATATCGTACCAGATCACCAAGATTAATCTGTATAAGAATGGCACGCATGGCAAGGCTTGGGGCATCGCTCATAAAAATGGCGCGCCCATTGCA
GAAGCTCCAAAGAAAATCAGTGGAGTTCACAAGCGCTGTTGGAAGTATATCCCAAGCTTGTCAAGATCATCAGAGAACGAACCAACCACAATGACGAATTTGGGAGAAAG
CAACCCATCAGCTGAGGTTCAAACTTCATGA
mRNA sequenceShow/hide mRNA sequence
AATACACAAAAACTCCCCATTTTCACTTTTTGCCCAAAGTTGTGTAGAGTAGCGAAATAGCAGTACCGGAGAGGAGCAACCAAACCTAGAGAGAGAGAGAGACGCCAATG
GCTGTCGCCAACAGAACTACGATCAGTCGAGCCCTAGATTTCTCCAGGCTAGCTTCGAGCTTTATCAGAAACTTCAGCACTTCTACGCTGTCAACCTCTTCTTCGGATCC
CAGTGCCTCGGCTGCTGCGAGTAAAAACAAGCGGAGGAAGAAGAAGAAGAACCTGTTCGAAGTGATTCAGTTTTTGCCCAACTGGGGAGTAGGATACCATGTCGCCAAGG
CTCACTGGGATGAAATATCGTACCAGATCACCAAGATTAATCTGTATAAGAATGGCACGCATGGCAAGGCTTGGGGCATCGCTCATAAAAATGGCGCGCCCATTGCAGAA
GCTCCAAAGAAAATCAGTGGAGTTCACAAGCGCTGTTGGAAGTATATCCCAAGCTTGTCAAGATCATCAGAGAACGAACCAACCACAATGACGAATTTGGGAGAAAGCAA
CCCATCAGCTGAGGTTCAAACTTCATGAGACTGCAGAGAAATTTAAGCGGCTGATTCTTTTTGGCCTACCCTATTTCCAGGTTCACAGAGTTCTAATTCTCTCTATATTA
GCGGTCCTTAAATATAGTCAGGTTTCCTAACGCCATTATATGAGGAGCATTTTGAGCTTTGCTTGTTTCTGAGATAAAAGAAAGATCAATCATCCCGAACTATGTGTAAG
TTAGAACTCGTTTCCTATTCTCAGTTACTACTGGATTTTTATCTTAAATAGGTTGAAGAATCTAGTTGGTATTTGTTAATCTGTGTTCTTCATCCTGCTGTGAGACGAAC
ATAAAAAAAAATACTCGTGAGAACATGTCCTTTTGTTTAAAATTACTTTATGAAGTAGAAATTTATTAGAATATTGGATGAAAAGTTGATGTAACAGTAACTTAAAACAG
ACTTGGG
Protein sequenceShow/hide protein sequence
MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVIQFLPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIA
EAPKKISGVHKRCWKYIPSLSRSSENEPTTMTNLGESNPSAEVQTS