CuGenDBv2

Gene ID	CmaCh02G008630
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	NusB domain-containing protein
Genome location	Cma_Chr02:5033280..5037448
RNA-Seq Expression	CmaCh02G008630
Synteny	CmaCh02G008630
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0031564 - transcription antitermination (biological process) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR006027 - NusB/RsmB/TIM44 IPR011605 - NusB antitermination factor IPR035926 - NusB-like superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6605513.1 hypothetical protein SDJN03_02830, partial [Cucurbita argyrosperma subsp. sororia]

8.5e-162

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Query:  MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVSMVVLPTRLDNVIATRPNFHFSS VSGIC FPFPTSAIVPYVKESVP LCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL

Query:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
        LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Subjt:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS

Query:  T
        T
Subjt:  T

XP_008449897.1 PREDICTED: uncharacterized protein LOC103491638 isoform X1 [Cucumis melo]

2.0e-131

84.21

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Query:  DNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL
        D VI TRPNFHFS+H+SGIC FPF  S+IVP+VK S+P LC QASLRASTSF +N V +E SS+ VSSIE IPKIDKSG+FCSPRAARELALSI+YA+CL
Subjt:  DNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL

Query:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK
        EGSDPVRLFEKRLN+R E GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAEILAAPPK+VYSKLILRFTRKLLVAVVD WD+  LK
Subjt:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK

Query:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV
        I+KVIP TWK+KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI+ETDST AR K+ V
Subjt:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV

XP_022948088.1 uncharacterized protein LOC111451776 [Cucurbita moschata]

3.2e-161

98.67

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Query:  MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVS+VVLPTRLDNVIATRPNFHFSS VSGIC FPFPTSAIVPYVKESVP LCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL

Query:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
        LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Subjt:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS

Query:  T
        T
Subjt:  T

XP_023007062.1 uncharacterized protein LOC111499665 [Cucurbita maxima]

4.8e-165

100

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Query:  MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL

Query:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
        LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Subjt:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS

Query:  T
        T
Subjt:  T

XP_023532267.1 uncharacterized protein LOC111794466 [Cucurbita pepo subsp. pepo]

1.1e-161

98.67

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Query:  MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGIC FPFPTSAIVPYVKESVP LCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAE+LAAPPKVVYSKLILRFTRKL
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL

Query:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
        LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILEL ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Subjt:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS

Query:  T
        T
Subjt:  T

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWZ5 NusB domain-containing protein

1.2e-129

83.33

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Query:  DNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL
        D VI TRPNFHFS H+SGIC FPF  S+IVP++K+S+P  C QASLRASTSFS+N V +E SS+ +SSIE IPK+DKSG+FCSPRAARELALSI+YA+CL
Subjt:  DNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL

Query:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK
        EGSDPVRLFEKRLNAR E GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAEILAAPPK+VYSKLILRFTRKLLVAV D WDS  LK
Subjt:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK

Query:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVK
        I+KVIP TWK+KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI+E DS  AR K
Subjt:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVK

A0A1S3BNR2 uncharacterized protein LOC103491638 isoform X1

9.9e-132

84.21

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Query:  DNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL
        D VI TRPNFHFS+H+SGIC FPF  S+IVP+VK S+P LC QASLRASTSF +N V +E SS+ VSSIE IPKIDKSG+FCSPRAARELALSI+YA+CL
Subjt:  DNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL

Query:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK
        EGSDPVRLFEKRLN+R E GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAEILAAPPK+VYSKLILRFTRKLLVAVVD WD+  LK
Subjt:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK

Query:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV
        I+KVIP TWK+KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI+ETDST AR K+ V
Subjt:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV

A0A5D3DDJ4 NusB/RsmB/TIM44

9.9e-132

84.21

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Query:  DNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL
        D VI TRPNFHFS+H+SGIC FPF  S+IVP+VK S+P LC QASLRASTSF +N V +E SS+ VSSIE IPKIDKSG+FCSPRAARELALSI+YA+CL
Subjt:  DNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL

Query:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK
        EGSDPVRLFEKRLN+R E GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAEILAAPPK+VYSKLILRFTRKLLVAVVD WD+  LK
Subjt:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK

Query:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV
        I+KVIP TWK+KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI+ETDST AR K+ V
Subjt:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV

A0A6J1G8E0 uncharacterized protein LOC111451776

1.6e-161

98.67

Show/hide

Query:  MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVS+VVLPTRLDNVIATRPNFHFSS VSGIC FPFPTSAIVPYVKESVP LCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL

Query:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
        LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Subjt:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS

Query:  T
        T
Subjt:  T

A0A6J1KXJ4 uncharacterized protein LOC111499665

2.3e-165

100

Show/hide

Query:  MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL

Query:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
        LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Subjt:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS

Query:  T
        T
Subjt:  T

SwissProt top hits

e value

%identity

Alignment

A7GWZ7 Transcription antitermination protein NusB

1.8e-05

35.37

Show/hide

Query:  VAVVDRWDSHVLK---IDKVIPSTWKDKPAGR--ILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL
        +  ++ +D+  LK   +D+++    K+K   R  I+EL IL L + E+   GT   ++INEA++LAK     +AP+ ING L
Subjt:  VAVVDRWDSHVLK---IDKVIPSTWKDKPAGR--ILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL

B1WXY6 Transcription antitermination protein NusB

5.2e-05

38.67

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Query:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQ
        +ID+ + +  KD    R+  ++  IL LA++EI  +    ++ INEAV+LAKR+ D    R ING LR F   I+
Subjt:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQ

Q18B61 Transcription antitermination protein NusB

3.6e-06

39.19

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Query:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI
        KID++I    K+    R+  +++ IL L++ EI  + T +++ INEAV+LAK +CD  +P+ ING L + V +I
Subjt:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI

Q5N1J7 Transcription antitermination protein NusB

2.3e-05

42.65

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Query:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR
        +ID+ +     D    R+  L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    R ING LR
Subjt:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR

Q8GIR7 Transcription antitermination protein NusB

2.3e-05

42.65

Show/hide

Query:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR
        +ID+ +     D    R+  L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    R ING LR
Subjt:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR

Arabidopsis top hits

e value

%identity

Alignment

AT4G26370.1 antitermination NusB domain-containing protein

5.4e-90

68.03

Show/hide

Query:  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTV
        +SLR   S +++++   + S       P+PKIDKSGR  SPRAARELAL I+YA+CLEGSDP+RLFEKR+NAR EPGYEFDK+SL+EYNHMSFGGPPV  
Subjt:  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTV

Query:  ETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINE
        ET EE DEL+R DEK+S IEAE+L+APPK+VYSKL+LRF +KLL AVVD+WDSHV+ I+K+ P  WK  PAGRILE  ILHLAMSE+ V+ TRH IVINE
Subjt:  ETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINE

Query:  AVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHA-RVKEVVS
        AVDLAKRFCDG+APRIINGCLRTFVKD   T +  A  +K+ VS
Subjt:  AVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHA-RVKEVVS

AT4G26370.2 antitermination NusB domain-containing protein

1.1e-37

62.9

Show/hide

Query:  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTV
        +SLR   S +++++   + S       P+PKIDKSGR  SPRAARELAL I+YA+CLEGSDP+RLFEKR+NAR EPGYEFDK+SL+EYNHMSFGGPPV  
Subjt:  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTV

Query:  ETAEEADELLRKDEKDSAIEAEIL
        ET EE DEL+R DEK+S I   ++
Subjt:  ETAEEADELLRKDEKDSAIEAEIL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTGGAACTTGTATCAATGGTGGTTTTGCCCACAAGACTGGATAATGTTATTGCTACCAGGCCTAATTTTCATTTCTCCTCCCACGTTTCTGGAATATGCTGTTTCCC
ATTCCCCACTAGTGCAATTGTTCCCTATGTAAAAGAATCCGTGCCACTCCTCTGCCCTCAAGCCTCGCTTCGCGCTTCTACTTCTTTCTCCAAAAATTCTGTGGGTAAAG
AGAGCAGTTCTGTTTTAGTTTCTTCCATTGAACCAATACCAAAGATTGACAAGAGTGGGAGATTTTGCAGCCCCAGAGCTGCTAGAGAGCTTGCTTTGTCAATTATTTAT
GCGTCTTGTTTAGAAGGCTCTGATCCAGTTCGACTCTTTGAGAAGCGGTTGAATGCTCGTCTAGAACCGGGATATGAATTTGACAAGACATCATTGATGGAATACAACCA
TATGAGCTTTGGTGGGCCGCCAGTAACTGTGGAAACAGCTGAAGAAGCAGATGAGCTTCTACGTAAGGATGAAAAGGATTCTGCAATCGAGGCAGAAATCCTTGCGGCCC
CTCCAAAGGTTGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACAGATGGGACAGTCACGTGCTTAAAATTGATAAAGTCATTCCT
TCAACTTGGAAGGACAAGCCAGCAGGACGGATTCTGGAACTTTGTATTCTTCACCTGGCTATGTCTGAAATAACGGTGGTTGGAACAAGGCATCAGATTGTGATTAACGA
GGCCGTCGATCTTGCAAAACGATTCTGCGACGGAGCAGCACCTCGTATTATTAATGGGTGCCTTAGGACCTTTGTGAAGGACATCCAAGAAACTGATTCTACTCATGCTC
GTGTGAAGGAAGTAGTCAGTACATGA

mRNA sequence

Show/hide mRNA sequence

CTTATCTTCACCCGACCCGCCTCCCCTTATCTTTTTCCCTCCAACTCTCTGTTTCATCTTCTCCGCCTTCTTTCTAACCCCTCCTTCCCGGCTTAAACCCTCCACGTTCG
GCAGAGGTCAACCGGAATTGGATCAGCCATATGGTTTGAAATTCTCCTGCGCCCAGCATGGTGGAACTTGTATCAATGGTGGTTTTGCCCACAAGACTGGATAATGTTAT
TGCTACCAGGCCTAATTTTCATTTCTCCTCCCACGTTTCTGGAATATGCTGTTTCCCATTCCCCACTAGTGCAATTGTTCCCTATGTAAAAGAATCCGTGCCACTCCTCT
GCCCTCAAGCCTCGCTTCGCGCTTCTACTTCTTTCTCCAAAAATTCTGTGGGTAAAGAGAGCAGTTCTGTTTTAGTTTCTTCCATTGAACCAATACCAAAGATTGACAAG
AGTGGGAGATTTTGCAGCCCCAGAGCTGCTAGAGAGCTTGCTTTGTCAATTATTTATGCGTCTTGTTTAGAAGGCTCTGATCCAGTTCGACTCTTTGAGAAGCGGTTGAA
TGCTCGTCTAGAACCGGGATATGAATTTGACAAGACATCATTGATGGAATACAACCATATGAGCTTTGGTGGGCCGCCAGTAACTGTGGAAACAGCTGAAGAAGCAGATG
AGCTTCTACGTAAGGATGAAAAGGATTCTGCAATCGAGGCAGAAATCCTTGCGGCCCCTCCAAAGGTTGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTG
GTTGCAGTTGTGGACAGATGGGACAGTCACGTGCTTAAAATTGATAAAGTCATTCCTTCAACTTGGAAGGACAAGCCAGCAGGACGGATTCTGGAACTTTGTATTCTTCA
CCTGGCTATGTCTGAAATAACGGTGGTTGGAACAAGGCATCAGATTGTGATTAACGAGGCCGTCGATCTTGCAAAACGATTCTGCGACGGAGCAGCACCTCGTATTATTA
ATGGGTGCCTTAGGACCTTTGTGAAGGACATCCAAGAAACTGATTCTACTCATGCTCGTGTGAAGGAAGTAGTCAGTACATGACTCTAAACTCTTGGGGTGGCTCAGGAC
CTTTGTAAGGATATACAAATTTTTGACTCAACTCGTGCTCTAGAGAAGCAAGAAGTGACTCTGAAAGTGGTGAGTCGTTAAGATGCTGTTGGCCGGATGGATAAGGAATT
AAGAGGGCACTTCCCTTCCATGGAAATGGAGTACTACGGAGTTTTAGATGTGTAATTGTTCTAGGGAGATAGTTCCTACAAAAGACTTCGATTAAGTGTATCAACTTTAC
CTCCTAAGTTTTAATTTTATCAAATGAAAATCTGGACTTAGAACATGTATTGAAATCTTTACCTCAGGGTTAAGGTCGACTCCCTGATAGGCCCTCCAAAACAATGAAAA
ACTTAATTCCAAACAAACCCATAAATATTTGTCCTGCTTCCCTTTTATTCTTGATATTGATACATGGCTATTACACAGGAAGGATAGCCTTTCCCAACTTCATAGTTATC
AAACTACTAAGGCAGTTGCAATTATTACAGAGGACGTATAAAATAAACATTGTTATGTAGGGGAGACTGGCTGTGTTAAGGAACAGTGATTCAGTCGCACACTAGCTAGC
GCTGCTAACACGAACAACCAGAG

Protein sequence

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MVELVSMVVLPTRLDNVIATRPNFHFSSHVSGICCFPFPTSAIVPYVKESVPLLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIY
ASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIP
STWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVST

CmaCh02G008630 (gene) of Cucurbita maxima (Rimu) v1.1 genome