CuGenDBv2

Gene ID	CmaCh02G009800
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Genome location	Cma_Chr02:5850008..5852447
RNA-Seq Expression	CmaCh02G009800
Synteny	CmaCh02G009800
Gene Ontology terms	GO:0034641 - cellular nitrogen compound metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0044260 - cellular macromolecule metabolic process (biological process) GO:0110165 - cellular anatomical structure (cellular component) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

RVW33283.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

3.0e-226

63.45

Show/hide

Query:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR
        +LGYV+GT+VPPPRFEPETS+T + KYLAW+AADQRLLCLLLS LTEEA+AVVVGLSTAR+VWLALE TFNH SKARELRLKDDLQLMKRGTKPVAEYAR
Subjt:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR

Query:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATNHGRT--HGSHPASFTNQRGR
         FK +C+QLHAIGRPVED DK+HWFLRGLGT+FS+FST QM+LTP+P FADLVS+ ESFELFQRSLE S+ T  AF ATN  RT  HG+  A   NQRGR
Subjt:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATNHGRT--HGSHPASFTNQRGR

Query:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI
        S+SH NNSSNRGRT+S  GRRPP CQICR EGHYA+RCNQRY R DSS AHLAEAFNTSCS++ P+AADWFLDTGA AHMT DPSILDQSKNY GKDSVI
Subjt:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI

Query:  VENGASLPITHT--------------------------------------------------------ESSNRKGG------GN----------------
        V NGASLPITHT                                                         +  R GG      GN                
Subjt:  VENGASLPITHT--------------------------------------------------------ESSNRKGG------GN----------------

Query:  ------------------------------------------------------------RTAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCR
                                                                     TA YIINRLPTPLLGGKSPF+LLY Y+PH +NFHPFGCR
Subjt:  ------------------------------------------------------------RTAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCR

Query:  VYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSP--HIPQSS
        VYP LRDYMPNKLSPR+IPCIFLGYSP HKGFRCLDP T++LYIT HAQFDETHFP +PSSQAQPLS++HISNFLEP LHHID S P+++SP  HIP+S+
Subjt:  VYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSP--HIPQSS

Query:  SSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTSIEPPVD-FSSLGTHPMITRAKAGIFKTRHPANLGMLGSSGLLYALLAST
        SSPC+ICSDLVDESVQVDTSLAGS+LPP  S+  SIE   D  SSLG+H MITRAKAGIFKTRHPANLG+LGSSGLL +LLAST
Subjt:  SSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTSIEPPVD-FSSLGTHPMITRAKAGIFKTRHPANLGMLGSSGLLYALLAST

RVW41798.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

7.2e-212

63.48

Show/hide

Query:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR
        +L YV+GT+VPPPRFEPETS+T + KYLAW+AA+QRLLCLLLSSLTEEA+AVVVGLSTAR+VWLALE TF+H SKARELRLKDDLQLMKRGTKPVAEYAR
Subjt:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR

Query:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATNHGRT--HGSHPASFTNQRGR
         FK +CDQLHAIGRPVED DK+HWFL                         LVS+ ESFELFQRSLE S+ T  AF ATN  RT  HG+  A   NQRGR
Subjt:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATNHGRT--HGSHPASFTNQRGR

Query:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI
        S+SH NNSSNRGRT+S  GRRPP CQIC  EGHYA+RCNQRY R DSS AHLAEAFNTSCS++ P+AADWFLDT A AHMT DPSILDQSKNY GKDSVI
Subjt:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI

Query:  VENGASLPITHTES----------SNRKGG-----GNR--------------------------------------------------------------
        V NGASLPITHT +           NR+ G     G R                                                              
Subjt:  VENGASLPITHTES----------SNRKGG-----GNR--------------------------------------------------------------

Query:  --------------------------TAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCL
                                  TA YIIN LPTPLLGGKSPF+LLYDY+PH +NFHPFGCRVYP LRDYM NKLSPR+IPCIFLGYSP HKGFRCL
Subjt:  --------------------------TAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCL

Query:  DPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTS
        DP T++LYIT HAQFDETHFP +PSSQAQPLS++HISNFLEP LHHID S P+  SP  HIP+S+SSPC+ICSDLVDESVQVDTSLAG +LPP  S+  S
Subjt:  DPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTS

Query:  IEPPVD-FSSLGTHPMITRAKAGIFKTRHPANLGMLGSSGLLYALLAST
        IE   D  SSLG+HPMITRAKAGIFKTRHPANLG+LGSSGLL+ALLAST
Subjt:  IEPPVD-FSSLGTHPMITRAKAGIFKTRHPANLGMLGSSGLLYALLAST

RVW43615.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

5.5e-228

66.26

Show/hide

Query:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR
        +L YV+GT+VPPPRFEPETS+T + KYLAW+AADQRLLCLLLSSLTEEA+AVVVGLSTAR+VWLALE TF+H SKARELRLKDDLQLMKRGTKPVAEYAR
Subjt:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR

Query:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATNHGRT--HGSHPASFTNQRGR
         FK +CDQLHAIGRPVED DK+HWFL GLG +FS+FST QM+LTP+P FADLVS+ ESFELFQRSLE S+ T  AF  TN  RT  HG+  A   NQRGR
Subjt:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATNHGRT--HGSHPASFTNQRGR

Query:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI
        S+SH NNSSNRGRT+S  GRRPP CQICR EGHYA+RCNQRY R DSS AHLAEAFNTSCS++ P+AADWFLDTGA AHMT DPS LDQSKNY GKDSVI
Subjt:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI

Query:  VENGASLPITHT---------------------ESSNRKGG------GN---------------------------------------------------
        V NGASLPITHT                      +  R GG      GN                                                   
Subjt:  VENGASLPITHT---------------------ESSNRKGG------GN---------------------------------------------------

Query:  -------------------------RTAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCL
                                  TA YIINRLPTPLLGGKSPF+LLY ++PH +NFHPFGCRVYP LRDYMPNKLSPR+IPCIFLGYSP HKGFRCL
Subjt:  -------------------------RTAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCL

Query:  DPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTS
        DP T++LYIT HAQFDETHFP +PSSQAQPLS++HISNFLEP LHHID S P+  SP  HIP+S+SSPC+ICSDLVDESV+VDTSLAGS+LPP  S+  S
Subjt:  DPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTS

Query:  IEPPVD-FSSLGTHPMITRAKAGIFKTRHPANLGMLGSSGLLYALLAST
        IE   D  SSLG+HPMITRAKAGIFKTRHPANLG+LGSSGLL ALLAST
Subjt:  IEPPVD-FSSLGTHPMITRAKAGIFKTRHPANLGMLGSSGLLYALLAST

RVW45095.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

3.0e-210

52.88

Show/hide

Query:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR
        +LGYV+GT+VPPPRFEPETS+T + KYLAW+AADQRLLCLLLSSLTEEA+ VVVGLSTAR+VWLALE TF+H SKARELRLKDDLQLMKRGTKPVAEYAR
Subjt:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR

Query:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATN--HGRTHGSHPASFTNQRGR
         FK +CDQLHAIGRPVED DK+HWFLRGLGT+FS+FST QM+LTP+P FADLVS+ ESFELFQRSLE S+ T  AF ATN  H  +HG+  A   NQRGR
Subjt:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATN--HGRTHGSHPASFTNQRGR

Query:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI
        S+SH NNSSNRGRT+S  GRRPP CQICR EGHYA+RCNQRY R DSS AHLAEAFNTSCS++ P+AADWFLDTGA AHMT DPSILDQSKNY GKD VI
Subjt:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI

Query:  VENGASLPITHT--------------------------------------------------------ESSNRKGG------GN----------------
        V NGASLPITHT                                                         +  R GG      GN                
Subjt:  VENGASLPITHT--------------------------------------------------------ESSNRKGG------GN----------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------------------------------------------------------------------------RTAAYII
                                                                                                      T  YII
Subjt:  ---------------------------------------------------------------------------------------------RTAAYII

Query:  NRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLS
        NRLPTPLLGGKSPF+LLY Y+PH +NFHPFGC VYP LRDYMPNKLSPR+IPCIFLGYSP HKGFRCLDP T++LYIT HAQFDETHFP +PSSQAQPLS
Subjt:  NRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLS

Query:  TIHISNFLEPHLHHIDSSLPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTSIEPPVD-FSSLGTHPMITRAKAGIFKTRHPAN
        ++HISNFLEP LHHID S P+  SP  HIP+S+SSPC+ICSDLVDESVQVDTSLAGS+LPP  S+  SIE   D  SSLG+HPMITRAKAGIFKTRHPAN
Subjt:  TIHISNFLEPHLHHIDSSLPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTSIEPPVD-FSSLGTHPMITRAKAGIFKTRHPAN

Query:  LGMLGSSGLLYALLAST
        LG+LGSSGLL ALLAST
Subjt:  LGMLGSSGLLYALLAST

RVW62468.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

7.7e-230

66.72

Show/hide

Query:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR
        +LGYV+GT+VPPPRFEPETS+T + KYLAW+AADQRLLCLLLSSLTEEA+AVVVGLSTAR+VWLALE TF+H SKARELRLKDDLQLMKRGTKPVAEYAR
Subjt:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR

Query:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATNHGRT--HGSHPASFTNQRGR
         FK +CDQ HAIGRPVED DK+HWFLRGL T+FS+FST QM+LTP+P FADLVS+ ESFELFQRSLE S+ T  AF ATN  RT  HG+  A   NQRGR
Subjt:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATNHGRT--HGSHPASFTNQRGR

Query:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI
        S+SH NNSSNRGRT+S  GRRPP CQICR EGHYA+RCNQRY R +SS AHLAEAFNTSCS++ P+AADWFLDTGA AHMT DPSILDQSKNY GKDS+I
Subjt:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI

Query:  VENGASLPITHTES----------SNRKGG-----GNR--------------------------------------------------------------
        V NGASLPITHT +           NR+ G     G R                                                              
Subjt:  VENGASLPITHTES----------SNRKGG-----GNR--------------------------------------------------------------

Query:  --------------------------TAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCL
                                  TA YIINRLPTPLLGGKSPF+LLY Y+PH +NFHPFGCRVYP LRDYMPNKLSPR+IPCIFLGYSP HKGFRCL
Subjt:  --------------------------TAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCL

Query:  DPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTS
        DP T++LYIT HAQFDETHFP IPSSQAQPLS++HISNFLEP LHHID S P+++SP  HI +S+SSPC+ICSDLVDESVQVDTSLAGS+LPP  S+  S
Subjt:  DPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTS

Query:  IEPPVD-FSSLGTHPMITRAKAGIFKTRHPANLGMLGSSGLLYALLAST
        IE   D  SSLG+HPMITRAKAGIFKTRHPANLG+LGSSGLL ALLAST
Subjt:  IEPPVD-FSSLGTHPMITRAKAGIFKTRHPANLGMLGSSGLLYALLAST

TrEMBL top hits

e value

%identity

Alignment

A0A438DCU0 Retrovirus-related Pol polyprotein from transposon RE1

1.5e-226

63.45

Show/hide

Query:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR
        +LGYV+GT+VPPPRFEPETS+T + KYLAW+AADQRLLCLLLS LTEEA+AVVVGLSTAR+VWLALE TFNH SKARELRLKDDLQLMKRGTKPVAEYAR
Subjt:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR

Query:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATNHGRT--HGSHPASFTNQRGR
         FK +C+QLHAIGRPVED DK+HWFLRGLGT+FS+FST QM+LTP+P FADLVS+ ESFELFQRSLE S+ T  AF ATN  RT  HG+  A   NQRGR
Subjt:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATNHGRT--HGSHPASFTNQRGR

Query:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI
        S+SH NNSSNRGRT+S  GRRPP CQICR EGHYA+RCNQRY R DSS AHLAEAFNTSCS++ P+AADWFLDTGA AHMT DPSILDQSKNY GKDSVI
Subjt:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI

Query:  VENGASLPITHT--------------------------------------------------------ESSNRKGG------GN----------------
        V NGASLPITHT                                                         +  R GG      GN                
Subjt:  VENGASLPITHT--------------------------------------------------------ESSNRKGG------GN----------------

Query:  ------------------------------------------------------------RTAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCR
                                                                     TA YIINRLPTPLLGGKSPF+LLY Y+PH +NFHPFGCR
Subjt:  ------------------------------------------------------------RTAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCR

Query:  VYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSP--HIPQSS
        VYP LRDYMPNKLSPR+IPCIFLGYSP HKGFRCLDP T++LYIT HAQFDETHFP +PSSQAQPLS++HISNFLEP LHHID S P+++SP  HIP+S+
Subjt:  VYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSP--HIPQSS

Query:  SSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTSIEPPVD-FSSLGTHPMITRAKAGIFKTRHPANLGMLGSSGLLYALLAST
        SSPC+ICSDLVDESVQVDTSLAGS+LPP  S+  SIE   D  SSLG+H MITRAKAGIFKTRHPANLG+LGSSGLL +LLAST
Subjt:  SSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTSIEPPVD-FSSLGTHPMITRAKAGIFKTRHPANLGMLGSSGLLYALLAST

A0A438E275 Retrovirus-related Pol polyprotein from transposon RE1

3.5e-212

63.48

Show/hide

Query:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR
        +L YV+GT+VPPPRFEPETS+T + KYLAW+AA+QRLLCLLLSSLTEEA+AVVVGLSTAR+VWLALE TF+H SKARELRLKDDLQLMKRGTKPVAEYAR
Subjt:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR

Query:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATNHGRT--HGSHPASFTNQRGR
         FK +CDQLHAIGRPVED DK+HWFL                         LVS+ ESFELFQRSLE S+ T  AF ATN  RT  HG+  A   NQRGR
Subjt:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATNHGRT--HGSHPASFTNQRGR

Query:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI
        S+SH NNSSNRGRT+S  GRRPP CQIC  EGHYA+RCNQRY R DSS AHLAEAFNTSCS++ P+AADWFLDT A AHMT DPSILDQSKNY GKDSVI
Subjt:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI

Query:  VENGASLPITHTES----------SNRKGG-----GNR--------------------------------------------------------------
        V NGASLPITHT +           NR+ G     G R                                                              
Subjt:  VENGASLPITHTES----------SNRKGG-----GNR--------------------------------------------------------------

Query:  --------------------------TAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCL
                                  TA YIIN LPTPLLGGKSPF+LLYDY+PH +NFHPFGCRVYP LRDYM NKLSPR+IPCIFLGYSP HKGFRCL
Subjt:  --------------------------TAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCL

Query:  DPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTS
        DP T++LYIT HAQFDETHFP +PSSQAQPLS++HISNFLEP LHHID S P+  SP  HIP+S+SSPC+ICSDLVDESVQVDTSLAG +LPP  S+  S
Subjt:  DPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTS

Query:  IEPPVD-FSSLGTHPMITRAKAGIFKTRHPANLGMLGSSGLLYALLAST
        IE   D  SSLG+HPMITRAKAGIFKTRHPANLG+LGSSGLL+ALLAST
Subjt:  IEPPVD-FSSLGTHPMITRAKAGIFKTRHPANLGMLGSSGLLYALLAST

A0A438E763 Retrovirus-related Pol polyprotein from transposon RE1

2.7e-228

66.26

Show/hide

Query:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR
        +L YV+GT+VPPPRFEPETS+T + KYLAW+AADQRLLCLLLSSLTEEA+AVVVGLSTAR+VWLALE TF+H SKARELRLKDDLQLMKRGTKPVAEYAR
Subjt:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR

Query:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATNHGRT--HGSHPASFTNQRGR
         FK +CDQLHAIGRPVED DK+HWFL GLG +FS+FST QM+LTP+P FADLVS+ ESFELFQRSLE S+ T  AF  TN  RT  HG+  A   NQRGR
Subjt:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATNHGRT--HGSHPASFTNQRGR

Query:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI
        S+SH NNSSNRGRT+S  GRRPP CQICR EGHYA+RCNQRY R DSS AHLAEAFNTSCS++ P+AADWFLDTGA AHMT DPS LDQSKNY GKDSVI
Subjt:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI

Query:  VENGASLPITHT---------------------ESSNRKGG------GN---------------------------------------------------
        V NGASLPITHT                      +  R GG      GN                                                   
Subjt:  VENGASLPITHT---------------------ESSNRKGG------GN---------------------------------------------------

Query:  -------------------------RTAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCL
                                  TA YIINRLPTPLLGGKSPF+LLY ++PH +NFHPFGCRVYP LRDYMPNKLSPR+IPCIFLGYSP HKGFRCL
Subjt:  -------------------------RTAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCL

Query:  DPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTS
        DP T++LYIT HAQFDETHFP +PSSQAQPLS++HISNFLEP LHHID S P+  SP  HIP+S+SSPC+ICSDLVDESV+VDTSLAGS+LPP  S+  S
Subjt:  DPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTS

Query:  IEPPVD-FSSLGTHPMITRAKAGIFKTRHPANLGMLGSSGLLYALLAST
        IE   D  SSLG+HPMITRAKAGIFKTRHPANLG+LGSSGLL ALLAST
Subjt:  IEPPVD-FSSLGTHPMITRAKAGIFKTRHPANLGMLGSSGLLYALLAST

A0A438EBA0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.5e-210

52.88

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Query:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR
        +LGYV+GT+VPPPRFEPETS+T + KYLAW+AADQRLLCLLLSSLTEEA+ VVVGLSTAR+VWLALE TF+H SKARELRLKDDLQLMKRGTKPVAEYAR
Subjt:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR

Query:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATN--HGRTHGSHPASFTNQRGR
         FK +CDQLHAIGRPVED DK+HWFLRGLGT+FS+FST QM+LTP+P FADLVS+ ESFELFQRSLE S+ T  AF ATN  H  +HG+  A   NQRGR
Subjt:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATN--HGRTHGSHPASFTNQRGR

Query:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI
        S+SH NNSSNRGRT+S  GRRPP CQICR EGHYA+RCNQRY R DSS AHLAEAFNTSCS++ P+AADWFLDTGA AHMT DPSILDQSKNY GKD VI
Subjt:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI

Query:  VENGASLPITHT--------------------------------------------------------ESSNRKGG------GN----------------
        V NGASLPITHT                                                         +  R GG      GN                
Subjt:  VENGASLPITHT--------------------------------------------------------ESSNRKGG------GN----------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------------------------------------------------------------------------------------RTAAYII
                                                                                                      T  YII
Subjt:  ---------------------------------------------------------------------------------------------RTAAYII

Query:  NRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLS
        NRLPTPLLGGKSPF+LLY Y+PH +NFHPFGC VYP LRDYMPNKLSPR+IPCIFLGYSP HKGFRCLDP T++LYIT HAQFDETHFP +PSSQAQPLS
Subjt:  NRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLS

Query:  TIHISNFLEPHLHHIDSSLPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTSIEPPVD-FSSLGTHPMITRAKAGIFKTRHPAN
        ++HISNFLEP LHHID S P+  SP  HIP+S+SSPC+ICSDLVDESVQVDTSLAGS+LPP  S+  SIE   D  SSLG+HPMITRAKAGIFKTRHPAN
Subjt:  TIHISNFLEPHLHHIDSSLPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTSIEPPVD-FSSLGTHPMITRAKAGIFKTRHPAN

Query:  LGMLGSSGLLYALLAST
        LG+LGSSGLL ALLAST
Subjt:  LGMLGSSGLLYALLAST

A0A438FR86 Retrovirus-related Pol polyprotein from transposon RE1

3.7e-230

66.72

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Query:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR
        +LGYV+GT+VPPPRFEPETS+T + KYLAW+AADQRLLCLLLSSLTEEA+AVVVGLSTAR+VWLALE TF+H SKARELRLKDDLQLMKRGTKPVAEYAR
Subjt:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYAR

Query:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATNHGRT--HGSHPASFTNQRGR
         FK +CDQ HAIGRPVED DK+HWFLRGL T+FS+FST QM+LTP+P FADLVS+ ESFELFQRSLE S+ T  AF ATN  RT  HG+  A   NQRGR
Subjt:  AFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATNHGRT--HGSHPASFTNQRGR

Query:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI
        S+SH NNSSNRGRT+S  GRRPP CQICR EGHYA+RCNQRY R +SS AHLAEAFNTSCS++ P+AADWFLDTGA AHMT DPSILDQSKNY GKDS+I
Subjt:  SYSHKNNSSNRGRTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVI

Query:  VENGASLPITHTES----------SNRKGG-----GNR--------------------------------------------------------------
        V NGASLPITHT +           NR+ G     G R                                                              
Subjt:  VENGASLPITHTES----------SNRKGG-----GNR--------------------------------------------------------------

Query:  --------------------------TAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCL
                                  TA YIINRLPTPLLGGKSPF+LLY Y+PH +NFHPFGCRVYP LRDYMPNKLSPR+IPCIFLGYSP HKGFRCL
Subjt:  --------------------------TAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCL

Query:  DPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTS
        DP T++LYIT HAQFDETHFP IPSSQAQPLS++HISNFLEP LHHID S P+++SP  HI +S+SSPC+ICSDLVDESVQVDTSLAGS+LPP  S+  S
Subjt:  DPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSP--HIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTS

Query:  IEPPVD-FSSLGTHPMITRAKAGIFKTRHPANLGMLGSSGLLYALLAST
        IE   D  SSLG+HPMITRAKAGIFKTRHPANLG+LGSSGLL ALLAST
Subjt:  IEPPVD-FSSLGTHPMITRAKAGIFKTRHPANLGMLGSSGLLYALLAST

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.9e-07

26.42

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Query:  GGGNRTAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFP
        G   +TA Y+INR P+  L  + P ++  +      +   FGCR + ++      KL  ++IPCIF+GY     G+R  DP   K+  +    F E+   
Subjt:  GGGNRTAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFP

Query:  AIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSPHIPQSSSSPCDICSDLVDESVQV
           +  ++ +    I NF+         ++P+TS+   P S+ S  D  S+  ++  +V
Subjt:  AIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSPHIPQSSSSPCDICSDLVDESVQV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

5.5e-21

24.1

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Query:  MLGYVNG-TMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYA
        + G+++G T +PP     + +   NP Y  W+  D+ +   +L +++      V   +TA  +W  L   + + S     +L+  L+   +GTK + +Y 
Subjt:  MLGYVNG-TMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYA

Query:  RAFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATNHGRTHGSHPASFTNQRGRS
        +      DQL  +G+P++  +++   L  L  E+        A    P   ++  +  + E    ++  +   P    A +H  T  ++  +  N+  R 
Subjt:  RAFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATNHGRTHGSHPASFTNQRGRS

Query:  YSHKNNSSN-------RGRTHSSQGRRPPH---CQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNT------SCSIAEP-DAADWFLDTGALAHMTVDP
        Y ++NN++N           H +  +  P+   CQIC  +GH A RC+Q      S ++    +  T      + ++  P  + +W LD+GA  H+T D 
Subjt:  YSHKNNSSN-------RGRTHSSQGRRPPH---CQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNT------SCSIAEP-DAADWFLDTGALAHMTVDP

Query:  SILDQSKNYTGKDSVIVENGASLPITHTESSN
        + L   + YTG D V+V +G+++PI+HT S++
Subjt:  SILDQSKNYTGKDSVIVENGASLPITHTESSN

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

2.7e-20

34.9

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Query:  LAHMTVDPSILDQSKNYTGKDSVIVENG------ASLPITHTESSNRKGGGNRTAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDY
        ++H+T  P   + +     K   IVE G      AS+P T+   +         A Y+INRLPTPLL  +SPF+ L+  +P+ D    FGC  YP+LR Y
Subjt:  LAHMTVDPSILDQSKNYTGKDSVIVENG------ASLPITHTESSNRKGGGNRTAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDY

Query:  MPNKLSPRNIPCIFLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSPHIPQSSSS
          +KL  ++  C+FLGYS     + CL   T++LYI+ H +FDE  FP   S+    LS +         +    ++LP T +P +P  S S
Subjt:  MPNKLSPRNIPCIFLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTSSPHIPQSSSS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.6e-20

31.08

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Query:  FLDTGALAHMTVDPSILDQSKNYTGKDSVIVENGASLPITHTESSNRKGGGNRTAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDY
        +L    ++H T  P   + +     K   IVE G +L    +            A Y+INRLPTPLL  +SPF+ L+   P+ +    FGC  YP+LR Y
Subjt:  FLDTGALAHMTVDPSILDQSKNYTGKDSVIVENGASLPITHTESSNRKGGGNRTAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDY

Query:  MPNKLSPRNIPCIFLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTS---------SPHI---PQ
          +KL  ++  C F+GYS     + CL   T +LY + H QFDE  FP   ++     S    S+       H  ++LPTT           PH+   P+
Subjt:  MPNKLSPRNIPCIFLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFPAIPSSQAQPLSTIHISNFLEPHLHHIDSSLPTTS---------SPHI---PQ

Query:  SSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTSIEPPVDFSSLGTHP
          SSP  +C+          T ++ S LP S+ +S S   P   S  G  P
Subjt:  SSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTSIEPPVDFSSLGTHP

Arabidopsis top hits

e value

%identity

Alignment

AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

1.5e-10

25.69

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Query:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLT-EEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYA
        ++G+++GT++P            N   + W+  D  +   L  +LT ++     V  ST+RD+WL ++  F +   AR LRL  +L+    G   VA+Y 
Subjt:  MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLT-EEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYA

Query:  RAFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQ-TESFELFQRSLE-----FSDSTPTAFIATNHGRTHGSHPASFT
        R  KK+ D L  +  PV D + + + L GL  +F           P P F D  +   E  +  +R+++        S+ +  +A +      +   S  
Subjt:  RAFKKICDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQ-TESFELFQRSLE-----FSDSTPTAFIATNHGRTHGSHPASFT

Query:  NQRGRSYSHKNNSSNRGR
        NQ G     + N+  RGR
Subjt:  NQRGRSYSHKNNSSNRGR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTGGGCTATGTCAATGGAACTATGGTTCCACCACCTCGCTTTGAACCAGAAACCTCCTCAACATTCAACCCCAAATATTTGGCATGGAGAGCAGCCGATCAA
CGACTTCTCTGTCTCCTGCTCTCCTCTCTCACTGAGGAAGCCATGGCTGTTGTCGTTGGTCTCTCTACTGCACGTGATGTTTGGCTTGCGTTGGAAACTACGTTC
AACCATCAGTCAAAAGCTCGTGAACTGAGACTCAAGGATGACTTGCAGTTGATGAAACGTGGCACAAAACCTGTTGCTGAGTATGCCCGTGCCTTCAAAAAAATT
TGTGACCAACTTCATGCCATTGGCAGACCCGTCGAGGACATTGATAAAATGCACTGGTTCCTTCGTGGACTCGGCACCGAATTTTCAGCTTTTTCTACTACTCAG
ATGGCTCTCACCCCTATCCCATGTTTTGCAGATCTAGTCTCTCAAACTGAAAGTTTTGAGTTGTTCCAGCGCTCCCTTGAGTTCTCTGACTCCACTCCTACAGCA
TTCATAGCCACTAATCATGGTCGCACCCATGGAAGTCACCCTGCTTCTTTTACCAACCAGCGAGGTCGATCTTATTCTCACAAAAACAACTCTTCTAATCGAGGA
CGAACCCACTCAAGTCAGGGTCGTCGACCACCTCATTGCCAAATATGCCGCAAAGAGGGTCATTATGCTAACCGCTGCAACCAACGGTATGTTCGACCTGATTCT
TCTCATGCTCACCTTGCTGAAGCCTTTAACACGTCATGTTCTATTGCTGAACCCGATGCTGCTGATTGGTTTCTGGACACTGGAGCTTTGGCCCATATGACTGTC
GACCCATCAATTCTGGATCAGTCTAAAAATTACACGGGTAAGGACTCTGTGATCGTAGAAAACGGTGCATCCCTACCCATTACCCACACCGAATCATCAAACAGG
AAGGGTGGTGGCAACCGCACTGCAGCTTATATTATCAACCGGTTGCCTACTCCACTTCTTGGAGGTAAGTCACCCTTTAAACTTCTTTATGACTACACTCCACAT
GATGACAATTTTCATCCCTTTGGTTGTCGTGTTTATCCTTATTTGCGTGATTATATGCCTAACAAGCTTTCTCCCCGCAACATTCCTTGTATTTTTTTGGGTTAT
AGTCCTGTTCATAAAGGGTTCCGCTGTCTTGATCCCGCCACCACTAAGCTATATATCACCTGCCATGCTCAATTTGATGAAACTCACTTTCCTGCTATCCCTAGC
TCCCAAGCTCAACCTCTTTCCACTATTCATATTTCAAATTTCTTGGAACCACATCTTCATCATATTGATTCATCCCTCCCTACCACTTCATCACCGCACATTCCT
CAATCCAGTTCATCCCCGTGTGATATTTGTTCTGACCTTGTAGATGAGTCTGTGCAGGTTGATACTTCTCTTGCAGGTTCCACTTTGCCACCCTCGACTTCTAAT
TCGACCTCTATTGAACCTCCTGTTGATTTCTCTTCTTTGGGCACTCATCCTATGATCACACGCGCCAAAGCTGGTATATTCAAGACTCGTCATCCAGCAAATCTT
GGTATGTTGGGTTCATCTGGACTTCTTTATGCTCTTCTTGCATCCACTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLGYVNGTMVPPPRFEPETSSTFNPKYLAWRAADQRLLCLLLSSLTEEAMAVVVGLSTARDVWLALETTFNHQSKARELRLKDDLQLMKRGTKPVAEYARAFKKI
CDQLHAIGRPVEDIDKMHWFLRGLGTEFSAFSTTQMALTPIPCFADLVSQTESFELFQRSLEFSDSTPTAFIATNHGRTHGSHPASFTNQRGRSYSHKNNSSNRG
RTHSSQGRRPPHCQICRKEGHYANRCNQRYVRPDSSHAHLAEAFNTSCSIAEPDAADWFLDTGALAHMTVDPSILDQSKNYTGKDSVIVENGASLPITHTESSNR
KGGGNRTAAYIINRLPTPLLGGKSPFKLLYDYTPHDDNFHPFGCRVYPYLRDYMPNKLSPRNIPCIFLGYSPVHKGFRCLDPATTKLYITCHAQFDETHFPAIPS
SQAQPLSTIHISNFLEPHLHHIDSSLPTTSSPHIPQSSSSPCDICSDLVDESVQVDTSLAGSTLPPSTSNSTSIEPPVDFSSLGTHPMITRAKAGIFKTRHPANL
GMLGSSGLLYALLAST

CmaCh02G009800 (gene) of Cucurbita maxima (Rimu) v1.1 genome