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CmaCh02G009900 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh02G009900
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionSWR1 complex subunit 2
Genome locationCma_Chr02:5900867..5903870
RNA-Seq ExpressionCmaCh02G009900
SyntenyCmaCh02G009900
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0043486 - histone exchange (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR008895 - Vps72/YL1 family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605652.1 SWR1 complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia]7.5e-8495.72Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTS
        MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVD+ DSDFSEDDSEPEEE ENEADERTQTKKRL+SPGKTS
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTS

Query:  SKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHEEKSRQGEDDEPGRHAS
        SKDNNKKRAVSKIEE SKDEA+TDHSTPPEHHDTPDDTEVERTEKKSTRTSAVV EAERDVIRSHNEANHEEKSR+GEDDEPGRHAS
Subjt:  SKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHEEKSRQGEDDEPGRHAS

KAG7035562.1 SWR1 complex subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]1.5e-6881.63Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSED-----------------------------
        MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVD+ DSDFSED                             
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSED-----------------------------

Query:  DSEPEEETENEADERTQTKKRLISPGKTSSKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNE
        DSEPEEE ENEADERTQTKKRL+SPGKTSSKDNNKKRAVSKIEE SKDEA+TDHSTPPEHHDTPDDTEVERTEKKSTRTSAVV EAERDVIRSHNE
Subjt:  DSEPEEETENEADERTQTKKRLISPGKTSSKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNE

XP_022159622.1 SWR1 complex subunit 2 [Momordica charantia]1.1e-5874.59Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTS
        M+++KE  APVFL+RSSR TRGKRMT+LLDEE+EEDELFWNQ+ALKEEE DDEYEE+PEI D+ DSDF+ED+SEPEEE ENEAD+RTQTKKRLI PGKTS
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTS

Query:  SKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHEEKSRQGEDDE
        SK  NKKRAVSKIE PSKDEA+TDHSTPPEHHDTPDDTEVERT +KSTRTS +V +AERD IR+  +A  +   R+   +E
Subjt:  SKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHEEKSRQGEDDE

XP_038907261.1 SWR1 complex subunit 2 isoform X1 [Benincasa hispida]3.1e-6176.24Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTS
        MDSSKE  APVFL+RSSR TRGKRMTKLLDEE+EEDELFWNQDALKE+EVDDEYEE+PE+ D+ DSDF+ED+SEPEEE ENEADERTQTKKRLI PGKTS
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTS

Query:  SKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHEEKSRQGEDDE
        SK+ NKKR VSK+E+PSKDEA+TDHSTPPEHHDTPDDTEVERT +KSTRTS +V +AERD IR+  +A  +   R+   +E
Subjt:  SKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHEEKSRQGEDDE

XP_038907266.1 SWR1 complex subunit 2 isoform X2 [Benincasa hispida]3.1e-6176.24Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTS
        MDSSKE  APVFL+RSSR TRGKRMTKLLDEE+EEDELFWNQDALKE+EVDDEYEE+PE+ D+ DSDF+ED+SEPEEE ENEADERTQTKKRLI PGKTS
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTS

Query:  SKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHEEKSRQGEDDE
        SK+ NKKR VSK+E+PSKDEA+TDHSTPPEHHDTPDDTEVERT +KSTRTS +V +AERD IR+  +A  +   R+   +E
Subjt:  SKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHEEKSRQGEDDE

TrEMBL top hitse value%identityAlignment
A0A1S3CUJ8 SWR1 complex subunit 24.5e-5875.14Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTS
        MDSSKE   PVFL+RSSR TRGKRMTKLLDEE EEDELFWNQDALKE+EVDDEYEE+PE+ D+ DSDF+ED+SEPEEE ENEA+ERTQ KKRLI PGKT 
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTS

Query:  SKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHEEKSRQGEDDE
        SK+ NKKRAVSKIE+PSKDEA+TDHSTPPEHHDTPDDTEVERT +KSTRTS +V +AERD IR+  +A  +   R+   +E
Subjt:  SKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHEEKSRQGEDDE

A0A5A7UJC3 SWR1 complex subunit 22.6e-5875.14Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTS
        MDSSKE   PVFL+RSSR TRGKRMTKLLDEE EEDELFWNQDALKE+EVDDEYEE+PE+ D+ DSDF+ED+SEPEEE ENEA+ERTQ KKRLI PGKT 
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTS

Query:  SKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHEEKSRQGEDDE
        SK+ NKKRAVSKIE+PSKDEA+TDHSTPPEHHDTPDDTEVERT +KSTRTS +V +AERD IR+  +A  +   R+   +E
Subjt:  SKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHEEKSRQGEDDE

A0A6J1DZB8 SWR1 complex subunit 25.3e-5974.59Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTS
        M+++KE  APVFL+RSSR TRGKRMT+LLDEE+EEDELFWNQ+ALKEEE DDEYEE+PEI D+ DSDF+ED+SEPEEE ENEAD+RTQTKKRLI PGKTS
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTS

Query:  SKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHEEKSRQGEDDE
        SK  NKKRAVSKIE PSKDEA+TDHSTPPEHHDTPDDTEVERT +KSTRTS +V +AERD IR+  +A  +   R+   +E
Subjt:  SKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHEEKSRQGEDDE

A0A6J1EM84 SWR1 complex subunit 27.6e-5874.03Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTS
        MDSSKE  A VFL+RSSR TRGKRMTKLLD+E+EEDELFWNQDALKE+EVDDEYEE+PE+ D+ DSDF+ED+SEPEEE ENEADERTQTKKRLI PGKT 
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTS

Query:  SKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHEEKSRQGEDDE
        SK+ NKKR VSKIE+ SKDEA+TD STPPEHHDTPDDTEVERT +KSTRTS +V +AERD IR+  +A  +   R+   +E
Subjt:  SKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHEEKSRQGEDDE

A0A6J1HZS7 SWR1 complex subunit 27.6e-5874.03Show/hide
Query:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTS
        MDSSKE  A VFL+RSSR TRGKRMTKLLD+E+EEDELFWNQDALKE+EVDDEYEE+PE+ D+ DSDF+ED+SEPEEE ENEADERTQTKKRLI PGKT 
Subjt:  MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTS

Query:  SKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHEEKSRQGEDDE
        SK+ NKKR VSKIE+ SKDEA+TD STPPEHHDTPDDTEVERT +KSTRTS +V +AERD IR+  +A  +   R+   +E
Subjt:  SKDNNKKRAVSKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHEEKSRQGEDDE

SwissProt top hitse value%identityAlignment
F4IP06 SWR1 complex subunit 21.8e-2748.59Show/hide
Query:  VFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTSSKDNNKK-RA
        VFL+R++R+TRGKRMTKLLD+E+EEDE FWNQ+ALKEEE DDEYE + E+ D+ DSDF++D+ EP+    NE + R   KKRLI PGKT+SK   KK + 
Subjt:  VFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTSSKDNNKK-RA

Query:  VSKIE-----EPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHE--EKSRQGED
        VS++E     E   +E         E ++  +D E E+  +KSTRTS VV +AERD +R+  +A  +  ++ + GE+
Subjt:  VSKIE-----EPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHE--EKSRQGED

Arabidopsis top hitse value%identityAlignment
AT2G36740.1 sequence-specific DNA binding transcription factors;DNA binding;DNA binding1.3e-2848.59Show/hide
Query:  VFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTSSKDNNKK-RA
        VFL+R++R+TRGKRMTKLLD+E+EEDE FWNQ+ALKEEE DDEYE + E+ D+ DSDF++D+ EP+    NE + R   KKRLI PGKT+SK   KK + 
Subjt:  VFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTSSKDNNKK-RA

Query:  VSKIE-----EPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHE--EKSRQGED
        VS++E     E   +E         E ++  +D E E+  +KSTRTS VV +AERD +R+  +A  +  ++ + GE+
Subjt:  VSKIE-----EPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHE--EKSRQGED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCATCCAAAGAAAGAGTTGCTCCCGTTTTTCTTGAGCGTTCTTCTCGGTCGACTAGAGGAAAGAGGATGACCAAATTGCTTGATGAGGAAATTGAAGAAGACGA
GTTGTTTTGGAATCAGGATGCTCTTAAAGAGGAGGAGGTTGATGATGAATACGAGGAAGATCCTGAGATTGTGGATAAACTTGATAGTGATTTCAGTGAAGATGACTCTG
AACCAGAGGAAGAAACTGAGAACGAAGCAGATGAGAGAACACAAACAAAGAAGCGATTAATATCTCCCGGAAAGACTTCTTCCAAGGACAATAATAAAAAGAGAGCTGTT
TCCAAAATTGAGGAACCATCCAAAGATGAAGCAGCGACTGATCACTCTACGCCTCCTGAACATCACGATACACCAGACGATACTGAAGTTGAGAGAACAGAGAAGAAATC
CACTAGAACTTCAGCTGTTGTTGGAGAAGCTGAGAGGGATGTTATTCGTAGCCACAATGAAGCTAATCACGAGGAAAAGTCCAGGCAAGGAGAAGACGACGAGCCAGGAA
GACATGCTTCTTGA
mRNA sequenceShow/hide mRNA sequence
TATATATACATACATACATACACAACATATATATATTTATATATATATATATGTATGTATATATGGCAAAAACCTGGAGGGAAACAGGGTTGAGGTGGCGGGCTCTGGAA
TTCGATCGAGAAGATTTTCCCGCGCTCCATCGTTAGATAACCCCAGATCGATTTAGCGTCCTGTCCAGTTCCAGTAACCAGAAAATCATCGTTATCCGCTACCACTTTTC
GGCCATCGGTAGCCGCCAGTGATTTCCACAAGTCTTGAACTTCAATTTCCAGTATTCGTTAGTGGATTTTGTTTCCCAGCCATGGATTCATCCAAAGAAAGAGTTGCTCC
CGTTTTTCTTGAGCGTTCTTCTCGGTCGACTAGAGGAAAGAGGATGACCAAATTGCTTGATGAGGAAATTGAAGAAGACGAGTTGTTTTGGAATCAGGATGCTCTTAAAG
AGGAGGAGGTTGATGATGAATACGAGGAAGATCCTGAGATTGTGGATAAACTTGATAGTGATTTCAGTGAAGATGACTCTGAACCAGAGGAAGAAACTGAGAACGAAGCA
GATGAGAGAACACAAACAAAGAAGCGATTAATATCTCCCGGAAAGACTTCTTCCAAGGACAATAATAAAAAGAGAGCTGTTTCCAAAATTGAGGAACCATCCAAAGATGA
AGCAGCGACTGATCACTCTACGCCTCCTGAACATCACGATACACCAGACGATACTGAAGTTGAGAGAACAGAGAAGAAATCCACTAGAACTTCAGCTGTTGTTGGAGAAG
CTGAGAGGGATGTTATTCGTAGCCACAATGAAGCTAATCACGAGGAAAAGTCCAGGCAAGGAGAAGACGACGAGCCAGGAAGACATGCTTCTTGAAGCTGCTCACACAGG
TGAAACTGATGGTTAATGTATGTTATTGTAGGTTGCAACACTGGGTGGATACTTTTAAGGGATCTTTTCATTTTTCTCTTGTATTAATATTTCAGACTTCCATATCTAAG
AAATCATGAACCTGAGAAATTTGGAGCGTGTTTTTGCATGAGAAGTAAAAAAGAGAGCAATTGTGAATAAAGCTGTGTACAATGGGATGATAACTTGTCCGTGTTTGGAA
TTATGTTATATTGGTGTATTTTGTAGCAGGTTGCTCGTATCTAGAGTTTAGTAAACTGTCATCATTTCAGGCAGAGCCTTCTTATTGGTACATGATCATTACCTCAATGA
AGCTTTTCATTGAATTAATGTTAAGGGAGGAGCGCTCAAAGATGCAAACTCC
Protein sequenceShow/hide protein sequence
MDSSKERVAPVFLERSSRSTRGKRMTKLLDEEIEEDELFWNQDALKEEEVDDEYEEDPEIVDKLDSDFSEDDSEPEEETENEADERTQTKKRLISPGKTSSKDNNKKRAV
SKIEEPSKDEAATDHSTPPEHHDTPDDTEVERTEKKSTRTSAVVGEAERDVIRSHNEANHEEKSRQGEDDEPGRHAS