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CmaCh02G010080 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh02G010080
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionX-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like
Genome locationCma_Chr02:5989665..5990090
RNA-Seq ExpressionCmaCh02G010080
SyntenyCmaCh02G010080
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3970875.1 hypothetical protein CMV_005466 [Castanea mollissima]5.8e-1243.45Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNATVDVCAVTETLNEPDFSDSV-----EGSG
        M DS+LEL  +AAS++LFIFC  NLII I+L  S+   SSS+     ++PL++VI++ TN +Q          D   +   +++  +S        E SG
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNATVDVCAVTETLNEPDFSDSV-----EGSG

Query:  DDHEDKDEEEDEDEDDEDFKRRVEEFIEKVNSGWREERQRTSRLV
        + H +KDEEED   DD++ +RRVEEFIEKVN  W+ E  R+SRLV
Subjt:  DDHEDKDEEEDEDEDDEDFKRRVEEFIEKVNSGWREERQRTSRLV

KAF5480290.1 hypothetical protein F2P56_001052, partial [Juglans regia]6.4e-1139.04Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQ-----KNATVDVCAVTETLNE-PDFSDSVEGS
        M DS+LEL + AAS++LFIFC  NLII+ ++       SS +    D++P+S++I+++T+ +Q    +     K  +++   ++ +L E    +D  E  
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQ-----KNATVDVCAVTETLNE-PDFSDSVEGS

Query:  GDDHEDKDEEEDEDEDDEDFKRRVEEFIEKVNSGWREERQRTSRLV
          DH++KD ++D  ED ++ +RRVEEFIEKVN GW+EE   +SRLV
Subjt:  GDDHEDKDEEEDEDEDDEDFKRRVEEFIEKVNSGWREERQRTSRLV

KAG6605668.1 hypothetical protein SDJN03_02985, partial [Cucurbita argyrosperma subsp. sororia]1.1e-6094.33Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNATVDVCAVTETLNEPDFSDSVEGSGDDHED
        MADSILELAAEAASSTLFIFCIFNLI+LIILFTSRPV SSSDHQNHDDVPLSIVIHSNTNA+QNFMLQKNA VDVCAVTETLNEPDFSDSVEGSGDDHED
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNATVDVCAVTETLNEPDFSDSVEGSGDDHED

Query:  KDEEEDEDEDDEDFKRRVEEFIEKVNSGWREERQRTSRLVE
        +DE+EDE ED+EDFKRRVEEFIEKVNSGWREERQRTSRLVE
Subjt:  KDEEEDEDEDDEDFKRRVEEFIEKVNSGWREERQRTSRLVE

XP_030950213.1 uncharacterized protein LOC115974139 [Quercus lobata]2.2e-1145.14Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNATVDVCAVTETLNEPDFSDS----VEGSGD
        M DS+LEL  +AAS++LFIFC  NLII I+L  S+   SSS+     ++PLS+VI+++TN +Q     K    D   +T       F ++     E SG+
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNATVDVCAVTETLNEPDFSDS----VEGSGD

Query:  DHEDKDEEEDEDEDDEDFKRRVEEFIEKVNSGWREERQRTSRLV
           +KDEEED   DD++ +RRVEEFIEKVN  W+ E  R+SRLV
Subjt:  DHEDKDEEEDEDEDDEDFKRRVEEFIEKVNSGWREERQRTSRLV

XP_031742158.1 probable ATP-dependent RNA helicase ddx52 [Cucumis sativus]2.5e-3164.79Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHD-DVPLSIVIHSNTN-AEQNFMLQKNATVDVCAVTETLNEPD----FSDSVEGS
        MADSILELAA+A SSTLFIFC FNLIIL+I FTSRP  SS D QN D D+PLSIVIHS TN  EQN MLQK+  V VC V E+ NE +    F+ +V+  
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHD-DVPLSIVIHSNTN-AEQNFMLQKNATVDVCAVTETLNEPD----FSDSVEGS

Query:  GDDHEDKDEEEDEDEDDEDFKRRVEEFIEKVNSGWREERQRT
          D +++D+ EDEDED++DF++RVEEFIEKVN GWREER RT
Subjt:  GDDHEDKDEEEDEDEDDEDFKRRVEEFIEKVNSGWREERQRT

TrEMBL top hitse value%identityAlignment
A0A2I4E8V2 uncharacterized protein LOC1089873755.8e-1038.41Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQ-----KNATVDVCAVTETLNE-PDFSDSVEGS
        M DS+LEL + AAS++LFIFC  NLII+ ++       SS +    D++P+S++I+++T+ +Q    +     K  +++   ++ +L E    +D  E  
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQ-----KNATVDVCAVTETLNE-PDFSDSVEGS

Query:  GDDHEDKDEEEDEDEDDEDFKRRVEEFIEKVNSGWREE
          DH++KD ++D  ED ++ +RRVEEFIEKVN GW+EE
Subjt:  GDDHEDKDEEEDEDEDDEDFKRRVEEFIEKVNSGWREE

A0A2N9GM45 Uncharacterized protein2.8e-1242.18Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSN------TNAEQNFMLQKNATVDVCAVTETLNEPDFS-DSVEG
        M DS+LEL  +AAS++LFIFC  NLII I+L  S+   SSSD     ++PLS+VI+++      TN +Q F   K        +    +E  +S ++   
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSN------TNAEQNFMLQKNATVDVCAVTETLNEPDFS-DSVEG

Query:  SGDDHEDKDEEEDEDEDDEDFKRRVEEFIEKVNSGWREERQRTSRLV
          ++  + + ++DEDEDD++ +RRVEEFIEKVN GW+ E  R+SRLV
Subjt:  SGDDHEDKDEEEDEDEDDEDFKRRVEEFIEKVNSGWREERQRTSRLV

A0A445GL19 Uncharacterized protein2.0e-1041.78Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNATVDVCAVTETLN--EPDFSDSVEGSGDDH
        M DS+L+   +AASS+ FIFC  NLII+IIL   +P  S S HQ   ++PLS   +    A+ +  L +  T  +    E  +  E +  +S+E  G+D 
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNATVDVCAVTETLN--EPDFSDSVEGSGDDH

Query:  EDKDEEEDEDE----DDEDFKRRVEEFIEKVNSGWREERQRTSRLV
           +EE+D+D+    D+++ KRRVEEFIEKVN GW+EE   TS LV
Subjt:  EDKDEEEDEDE----DDEDFKRRVEEFIEKVNSGWREERQRTSRLV

A0A7N2QYC4 Uncharacterized protein1.1e-1145.14Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNATVDVCAVTETLNEPDFSDS----VEGSGD
        M DS+LEL  +AAS++LFIFC  NLII I+L  S+   SSS+     ++PLS+VI+++TN +Q     K    D   +T       F ++     E SG+
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNATVDVCAVTETLNEPDFSDS----VEGSGD

Query:  DHEDKDEEEDEDEDDEDFKRRVEEFIEKVNSGWREERQRTSRLV
           +KDEEED   DD++ +RRVEEFIEKVN  W+ E  R+SRLV
Subjt:  DHEDKDEEEDEDEDDEDFKRRVEEFIEKVNSGWREERQRTSRLV

K7MIR2 Uncharacterized protein2.0e-1041.78Show/hide
Query:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNATVDVCAVTETLN--EPDFSDSVEGSGDDH
        M DS+L+   +AASS+ FIFC  NLII+IIL   +P  S S HQ   ++PLS   +    A+ +  L +  T  +    E  +  E +  +S+E  G+D 
Subjt:  MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNATVDVCAVTETLN--EPDFSDSVEGSGDDH

Query:  EDKDEEEDEDE----DDEDFKRRVEEFIEKVNSGWREERQRTSRLV
           +EE+D+D+    D+++ KRRVEEFIEKVN GW+EE   TS LV
Subjt:  EDKDEEEDEDE----DDEDFKRRVEEFIEKVNSGWREERQRTSRLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATTCCATTTTGGAACTAGCTGCCGAGGCGGCTTCCAGCACTCTGTTCATCTTCTGCATCTTCAATTTGATCATTCTCATCATTCTCTTCACCTCAAGACCAGT
CTTCTCCAGTTCTGATCACCAAAATCATGATGATGTGCCTCTTTCAATCGTCATTCACAGCAACACAAATGCAGAACAGAATTTCATGCTTCAGAAAAATGCCACAGTTG
ATGTGTGTGCAGTGACAGAGACCCTAAATGAACCAGACTTCAGCGACAGTGTTGAAGGGAGTGGTGATGATCATGAGGACAAGGATGAGGAAGAGGACGAGGACGAGGAC
GATGAGGATTTCAAAAGAAGAGTGGAAGAGTTCATTGAAAAGGTTAACAGTGGGTGGAGAGAAGAAAGACAAAGAACCTCGAGATTGGTCGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATTCCATTTTGGAACTAGCTGCCGAGGCGGCTTCCAGCACTCTGTTCATCTTCTGCATCTTCAATTTGATCATTCTCATCATTCTCTTCACCTCAAGACCAGT
CTTCTCCAGTTCTGATCACCAAAATCATGATGATGTGCCTCTTTCAATCGTCATTCACAGCAACACAAATGCAGAACAGAATTTCATGCTTCAGAAAAATGCCACAGTTG
ATGTGTGTGCAGTGACAGAGACCCTAAATGAACCAGACTTCAGCGACAGTGTTGAAGGGAGTGGTGATGATCATGAGGACAAGGATGAGGAAGAGGACGAGGACGAGGAC
GATGAGGATTTCAAAAGAAGAGTGGAAGAGTTCATTGAAAAGGTTAACAGTGGGTGGAGAGAAGAAAGACAAAGAACCTCGAGATTGGTCGAGTAG
Protein sequenceShow/hide protein sequence
MADSILELAAEAASSTLFIFCIFNLIILIILFTSRPVFSSSDHQNHDDVPLSIVIHSNTNAEQNFMLQKNATVDVCAVTETLNEPDFSDSVEGSGDDHEDKDEEEDEDED
DEDFKRRVEEFIEKVNSGWREERQRTSRLVE