; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmaCh02G014580 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh02G014580
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
DescriptionYqgFc domain-containing protein
Genome locationCma_Chr02:8377704..8379811
RNA-Seq ExpressionCmaCh02G014580
SyntenyCmaCh02G014580
Gene Ontology termsGO:0000967 - rRNA 5'-end processing (biological process)
InterPro domainsIPR005227 - Putative pre-16S rRNA nuclease
IPR006641 - YqgF/RNase H-like domain
IPR012337 - Ribonuclease H-like superfamily
IPR037027 - YqgF/RNase H-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606099.1 hypothetical protein SDJN03_03416, partial [Cucurbita argyrosperma subsp. sororia]1.1e-81100Show/hide
Query:  GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYT
        GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYT
Subjt:  GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYT

Query:  FWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE
        FWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE
Subjt:  FWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE

KAG7036046.1 hypothetical protein SDJN02_02846 [Cucurbita argyrosperma subsp. argyrosperma]5.8e-8686.53Show/hide
Query:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNAD--------
        MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRN D        
Subjt:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNAD--------

Query:  -----------------AVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE
                         AVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE
Subjt:  -----------------AVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE

XP_022957830.1 uncharacterized protein LOC111459253 [Cucurbita moschata]3.0e-9099.4Show/hide
Query:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI
        MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI
Subjt:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE
        DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPEL+E
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE

XP_022995255.1 uncharacterized protein LOC111490857 [Cucurbita maxima]1.3e-90100Show/hide
Query:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI
        MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI
Subjt:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE
        DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE

XP_023533829.1 uncharacterized protein LOC111795559 [Cucurbita pepo subsp. pepo]6.6e-9099.4Show/hide
Query:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI
        MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI
Subjt:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE
        DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQ YLDHFNRRPELEE
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE

TrEMBL top hitse value%identityAlignment
A0A0A0KMK7 YqgFc domain-containing protein2.5e-7484.02Show/hide
Query:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI
        MKYVRPL LFRDL K +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M LMA DFQ++ISE SL+GFIVGYPFD  R N DA+QVKIFI
Subjt:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEES
        DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPL L P +SKTIIDKFAAVGILQGYLD+FNRRPEL E+
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEES

A0A1S3ATQ4 putative pre-16S rRNA nuclease isoform X11.4e-6978.7Show/hide
Query:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI
        MKYV+P  LFRDLLK + L+  R LGLDVGDKYVGLAVSDPDNKIASPLSVL RKK  M LMA DFQ+LISE SL+GFIVGYPFD  R+N +A+QVKIFI
Subjt:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEES
        DDLCKTGKLEGVKYTFWDE FTSKNVE +IKPL L P +SKT++DKFAAVGILQGYLD+FNRRPEL E+
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEES

A0A6J1E3H7 uncharacterized protein LOC1110261452.5e-7989.16Show/hide
Query:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI
        MKYV+PLN+FRDLL  N LERGRFLGLDVGDKYVGLAVSDPDN IASPLSVL RKKT MHLMA D QRLISELSL+GFIVGYPFD QRRNADAVQVKIFI
Subjt:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPEL
        DDLCKTG LEGVKYTFWDECFTSKNVELLIKPL+LPP+LSKTI+DKFAAVGILQGYLD+ NRRPEL
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPEL

A0A6J1H0B7 uncharacterized protein LOC1114592531.4e-9099.4Show/hide
Query:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI
        MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI
Subjt:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE
        DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPEL+E
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE

A0A6J1K3L4 uncharacterized protein LOC1114908576.4e-91100Show/hide
Query:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI
        MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI
Subjt:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE
        DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE

SwissProt top hitse value%identityAlignment
A4XKC6 Putative pre-16S rRNA nuclease8.9e-1334.04Show/hide
Query:  RFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKI-FIDDLC-KTGKLEGVKYTFWDEC
        R L LD+G + +G+A+SDP    A P  VL  +K +++   LD  ++ +E  +   ++GYP    + + D    K+  ID++C +  +   V    WDE 
Subjt:  RFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKI-FIDDLC-KTGKLEGVKYTFWDEC

Query:  FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFN
        F++K VE +++   +     K ++DK AAV ILQGYLD  N
Subjt:  FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFN

B6IN25 Putative pre-16S rRNA nuclease2.6e-1231.58Show/hide
Query:  LKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQ-VKIFIDDLCKTGKLEGV
        LK +    GR +GLD+G+K +GLAVSDP   +ASP+  + R K      A +  R + +  +   +VG P +         Q V+ F   L +  +L G 
Subjt:  LKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQ-VKIFIDDLCKTGKLEGV

Query:  --KYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNR
          +  FWDE  ++  VE ++    +       ++DK AA  ILQG LD   +
Subjt:  --KYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNR

B8I4S7 Putative pre-16S rRNA nuclease4.4e-1230.66Show/hide
Query:  RFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFD-GQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECF
        R LG+D GD  +G+A+SDP    A  L ++ + K ++    L    +I+E S++  ++GYP +    +     + + FI  +   G+   +K   WDE  
Subjt:  RFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFD-GQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECF

Query:  TSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLD
        T+ +    +  L +     K I+D  +AV ILQGYLD
Subjt:  TSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLD

B9MRK7 Putative pre-16S rRNA nuclease1.3e-1132.37Show/hide
Query:  RFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFT
        R L LD+G+  VG+A+SDP    A P+  +  +  ++     +  ++    ++   ++GYP      +    ++K   +   K G    V+   WDE F+
Subjt:  RFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFT

Query:  SKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFN
        +K VE +I   +L     K IIDK AAV ILQGYLD +N
Subjt:  SKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFN

C4Z578 Putative pre-16S rRNA nuclease2.0e-1232.14Show/hide
Query:  RFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTN-MHLMALDFQRLISELSLSGFIVGYPFDGQRRNAD---AVQVKIFIDDLCKTGKLEGVKYTFWD
        R +GLDVG K VG+A+SDP    A P   + RK+ N +       +++ISE  ++  +VGYP     +N D     + K   +      +  G+  T WD
Subjt:  RFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTN-MHLMALDFQRLISELSLSGFIVGYPFDGQRRNAD---AVQVKIFIDDLCKTGKLEGVKYTFWD

Query:  ECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLD
        E  T+   + +++   +     KT+ID+ AAV IL+GY++
Subjt:  ECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLD

Arabidopsis top hitse value%identityAlignment
AT3G52905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.9e-5159.88Show/hide
Query:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI
        MKYV+PL+L  + LK      GRFLGLDVGDKYVGLA+SDP N +ASPLSVL RKK+N+ LMA DFQ L+   S+SG +VGYPF       D V V +FI
Subjt:  MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNR
        ++L KT KL+ VKYT+WDE  +SK VEL++KPL L P+  KT++DK AAV ILQ YLD+ NR
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTACGTGAGGCCGTTGAATTTGTTTCGCGATTTGTTAAAGGGAAATGCCCTTGAACGTGGCCGTTTTTTGGGTTTAGATGTTGGTGATAAGTATGTTGGTTTGGC
CGTCTCTGATCCAGATAATAAAATCGCGTCGCCTCTTAGTGTTTTGTTCAGGAAGAAAACCAATATGCATCTGATGGCTCTGGATTTTCAGAGATTGATCTCTGAACTTT
CTCTGTCAGGGTTCATTGTTGGATACCCTTTCGATGGACAACGACGCAACGCCGATGCTGTGCAAGTGAAGATCTTCATCGATGACCTTTGTAAAACTGGAAAACTTGAA
GGCGTAAAATATACTTTTTGGGACGAGTGCTTTACATCAAAGAATGTGGAACTTCTGATAAAGCCATTGAAACTGCCTCCTATTTTGTCAAAGACAATAATTGACAAGTT
TGCTGCGGTTGGAATACTTCAGGGTTACTTGGATCATTTTAACAGAAGACCAGAATTGGAAGAGAGTAATGACAACAACGAGACCATATAA
mRNA sequenceShow/hide mRNA sequence
TCTGGTCCTGACCAGATCAAATTGGGATTTCTTCCGAAAAGAATTGTATCGAGGTTTCGAGTTCGGGCTTAATTCACTGTCCTTCATCTTCAAGTCTGCAGGCGCGAAGC
TGAAAATGATTTGCGAATCAGCTGCTGGATAACATGGTTCACTGAGCTAGATAGTAGTACAAGATGAAGTACGTGAGGCCGTTGAATTTGTTTCGCGATTTGTTAAAGGG
AAATGCCCTTGAACGTGGCCGTTTTTTGGGTTTAGATGTTGGTGATAAGTATGTTGGTTTGGCCGTCTCTGATCCAGATAATAAAATCGCGTCGCCTCTTAGTGTTTTGT
TCAGGAAGAAAACCAATATGCATCTGATGGCTCTGGATTTTCAGAGATTGATCTCTGAACTTTCTCTGTCAGGGTTCATTGTTGGATACCCTTTCGATGGACAACGACGC
AACGCCGATGCTGTGCAAGTGAAGATCTTCATCGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAATATACTTTTTGGGACGAGTGCTTTACATCAAAGAATGT
GGAACTTCTGATAAAGCCATTGAAACTGCCTCCTATTTTGTCAAAGACAATAATTGACAAGTTTGCTGCGGTTGGAATACTTCAGGGTTACTTGGATCATTTTAACAGAA
GACCAGAATTGGAAGAGAGTAATGACAACAACGAGACCATATAA
Protein sequenceShow/hide protein sequence
MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLE
GVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEESNDNNETI