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CmaCh02G016040 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh02G016040
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionprotein LOL1
Genome locationCma_Chr02:9121095..9124094
RNA-Seq ExpressionCmaCh02G016040
SyntenyCmaCh02G016040
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2408479.1 Protein LOL1 Protein LSD ONE LIKE 1 [Vigna angularis]6.2e-3867.19Show/hide
Query:  AQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGVWRLPYSSHVHSRCYQRAMFLLSHRQLSFGSESGGACEL
        AQSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPP  S     L C R    HRNG   + RLPYS+HVH R  + AMFLLSH Q S GS+SGG C+L
Subjt:  AQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGVWRLPYSSHVHSRCYQRAMFLLSHRQLSFGSESGGACEL

Query:  WELPDATDVSVWSTFSEMFSVQLCDISW
        WEL DAT V +WS   EM S+Q C+ISW
Subjt:  WELPDATDVSVWSTFSEMFSVQLCDISW

KAG4933304.1 hypothetical protein JHK87_047306 [Glycine soja]3.9e-3270.27Show/hide
Query:  PVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGVWRLPYSSHVHSRCYQRAM
        PVPLAPYPTPP PYTPPAN  QSQLVCSGCRNLL++PVGATSVCCAVCNAVTAVPPP  S    +L C R    HRNG   +WRLPY +HVH    + AM
Subjt:  PVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGVWRLPYSSHVHSRCYQRAM

Query:  FLLSHRQLSFG
        F+LSH Q SFG
Subjt:  FLLSHRQLSFG

XP_027345016.1 protein LOL1-like isoform X2 [Abrus precatorius]1.1e-3153.59Show/hide
Query:  PVPLAPYPTPPPPYTPP-ANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGVWRLPYSSHVHSRCYQRA
        PVPLAPYPTPP PYTPP AN AQSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPG  +   +       L++  G T          V   C    
Subjt:  PVPLAPYPTPPPPYTPP-ANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGVWRLPYSSHVHSRCYQRA

Query:  MFLLSHRQLSFGSESGGACELWELPDATDVSVWSTFSEMFSVQLCDISWDVDK
           L           GG C+LWEL DAT V +WS   EM S+Q C+I W + K
Subjt:  MFLLSHRQLSFGSESGGACELWELPDATDVSVWSTFSEMFSVQLCDISWDVDK

XP_040871108.1 uncharacterized protein LOC100306356 isoform X1 [Glycine max]2.5e-4767.11Show/hide
Query:  PVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGVWRLPYSSHVHSRCYQRAM
        PVPLAPYPTPP PYTPPAN  QSQLVCSGCRNLL++PVGATSVCCAVCNAVTAVPPP  S     L C R    HRNG   +WRLPY +HVH    + AM
Subjt:  PVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGVWRLPYSSHVHSRCYQRAM

Query:  FLLSHRQLSFGSESGGACELWELPDATDVSVWSTFSEMFSVQLCDISWDVDK
        FLLSH Q SFGS+SGG C+LW+L DAT V +WS   EM S+Q C+ISW   K
Subjt:  FLLSHRQLSFGSESGGACELWELPDATDVSVWSTFSEMFSVQLCDISWDVDK

XP_040871109.1 uncharacterized protein LOC100306356 isoform X2 [Glycine max]7.3e-4766.45Show/hide
Query:  PVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGVWRLPYSSHVHSRCYQRAM
        PVPLAPYPTPP PYTPPAN  QSQLVCSGCRNLL++PVGATSVCCAVCNAVTAVPP      P  L C R    HRNG   +WRLPY +HVH    + AM
Subjt:  PVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGVWRLPYSSHVHSRCYQRAM

Query:  FLLSHRQLSFGSESGGACELWELPDATDVSVWSTFSEMFSVQLCDISWDVDK
        FLLSH Q SFGS+SGG C+LW+L DAT V +WS   EM S+Q C+ISW   K
Subjt:  FLLSHRQLSFGSESGGACELWELPDATDVSVWSTFSEMFSVQLCDISWDVDK

TrEMBL top hitse value%identityAlignment
A0A067EB69 Uncharacterized protein7.0e-2755.22Show/hide
Query:  PVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGVWRLPYSSHVHSRCYQRAM
        PVPLAPYPTPP PYTPPAN AQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG  +   +       L++  G T          V   C     
Subjt:  PVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGVWRLPYSSHVHSRCYQRAM

Query:  FLLSHRQLSFGSESGGACELWELPDATDVSVWST
          L           G   +LWEL DA DV +WST
Subjt:  FLLSHRQLSFGSESGGACELWELPDATDVSVWST

A0A1J6KBT0 Protein lsd11.2e-3154.48Show/hide
Query:  PVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGVWRLPYSSHVHSRCYQRAM
        PVPLAPYPTPP P+TPPAN  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG  +   +       L++  G T          V   C     
Subjt:  PVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGVWRLPYSSHVHSRCYQRAM

Query:  FLLSHRQLSFGSESGGACELWELPDATDVSVWSTFSEMFSVQLCD
          +           G  CELW+LP A DV +W T SEM SVQ CD
Subjt:  FLLSHRQLSFGSESGGACELWELPDATDVSVWSTFSEMFSVQLCD

A0A6J1ET02 protein LOL14.5e-2676.19Show/hide
Query:  MPPVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGV
        MPPVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG  +   +       L++  G T V
Subjt:  MPPVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGV

A0A6J1K0Y9 protein LOL14.5e-2676.19Show/hide
Query:  MPPVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGV
        MPPVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG  +   +       L++  G T V
Subjt:  MPPVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGV

V7CEH5 Uncharacterized protein4.7e-3151.97Show/hide
Query:  PVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGVWRLPYSSHVHSRCYQRAM
        PVPLAPYP P  PYTPPAN AQSQLVCSGCRNLL+YP GATSVCCAVCNAVT VPPPG  +   +       L++  G T         +V   C     
Subjt:  PVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGVWRLPYSSHVHSRCYQRAM

Query:  FLLSHRQLSFGSESGGACELWELPDATDVSVWSTFSEMFSVQLCDISWDVDK
          L           GG C+LWEL DAT V +WS   EM S+Q C+ISW   K
Subjt:  FLLSHRQLSFGSESGGACELWELPDATDVSVWSTFSEMFSVQLCDISWDVDK

SwissProt top hitse value%identityAlignment
Q0J7V9 Protein LSD11.2e-2064.63Show/hide
Query:  PVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGV
        PVPLAPYPTPP P+TPP N AQSQLVCSGCRNLL+YP GATSVCCAVC+ VTAVP PG  +   +       L++  G T V
Subjt:  PVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGV

Q2QMB3 Protein LOL26.3e-0943.02Show/hide
Query:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTA-VPPPGISVLPPLLYCLRWFLLHRNGTTGV---------WRLPYSSHVHSRCYQ
        QSQ+VC GCRN+LLYP GA SVCCAVC+AV++  P PG+ +   +    R  L++    T V            P SS  H  C Q
Subjt:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTA-VPPPGISVLPPLLYCLRWFLLHRNGTTGV---------WRLPYSSHVHSRCYQ

Q69UP7 Protein LOL11.3e-0962.96Show/hide
Query:  LAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP
        +A  P    P +  +  AQSQLVCSGCRNLL+YP GATS+CCAVC  VTAVP P
Subjt:  LAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP

Q6ASS2 Protein LOL35.3e-0869.44Show/hide
Query:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP
        QSQ+VC GCR++L YP GA SVCCA+C A+T VPPP
Subjt:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP

Q93ZB1 Protein LOL19.4e-2162.64Show/hide
Query:  PVPLAPYPTPPPP------YTPPAN---TAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGV
        PVPLAPYPTPP P       TPPAN   + QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPG  +   +       L++  G T V
Subjt:  PVPLAPYPTPPPP------YTPPAN---TAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGV

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 13.2e-1661.54Show/hide
Query:  ANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGV
        + + QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPG  +   +       L++  G T V
Subjt:  ANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGV

AT1G32540.2 lsd one like 16.7e-2262.64Show/hide
Query:  PVPLAPYPTPPPP------YTPPAN---TAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGV
        PVPLAPYPTPP P       TPPAN   + QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPG  +   +       L++  G T V
Subjt:  PVPLAPYPTPPPP------YTPPAN---TAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGV

AT1G32540.3 lsd one like 16.7e-2262.64Show/hide
Query:  PVPLAPYPTPPPP------YTPPAN---TAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGV
        PVPLAPYPTPP P       TPPAN   + QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPG  +   +       L++  G T V
Subjt:  PVPLAPYPTPPPP------YTPPAN---TAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGV

AT4G20380.1 LSD1 zinc finger family protein3.2e-0866.67Show/hide
Query:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP
        Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP
Subjt:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP

AT4G20380.2 LSD1 zinc finger family protein3.2e-0866.67Show/hide
Query:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP
        Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP
Subjt:  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGAATTTGCCCCACTGCTCACTGCTCATTTCATTGCCCACCAAACTTGCTTTGGCTTTTGCAACCTTTCCTTCCCCTGCTTCTTCCTTGCTGCCTTTCTCCATAT
ATTTTCAAGCTTAATACAATTACATTCTCTGTTCAAGGCTCAGATTCAGAAAGCTTTTTGCATGGGAAAAGGAGATTCCCCTGCATCAAGCTGCAAAATGCCACCAGTTC
CTCTTGCGCCATATCCAACTCCTCCGCCGCCTTATACTCCACCTGCTAATACCGCACAGAGCCAGCTTGTGTGTTCCGGATGTAGAAACCTTTTGCTTTATCCTGTTGGG
GCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTTACCGCCGTTCCGCCGCCCGGTATTTCAGTTCTTCCTCCTCTTCTTTACTGTCTCCGTTGGTTTCTACTGCACAG
AAATGGCACAACTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATTCGCGGTGCTACCAGCGTGCAATGTTCTTGTTGTCACACCGTCAACTTAGCTTTGGAAGCG
AATCAGGTGGCGCATGTGAGCTGTGGGAACTGCCGGATGCTACTGATGTATCAGTATGGAGCACGTTCAGTGAAATGTTCAGTGTGCAACTTTGTGACATCAGTTGGGAT
GTCGACAAGCGCAGTCGATCAAAAAGCCTAACAGCTAAAGTTATGGTAAACATGGTTGTCCCCGACTCGACAACTGTGGCTTTGCATCATTCGTATCGCCCTCCGCCATG
TTTGATCAACTCGACAAGCGGAGAACAGAACGGTACATGGGTCGCCATTGGCATACAAAAGATCATAATCATGCATGTGAAGGGGACTAAAGTGGAGACAAAACAAGGCA
AGCTTGCAATAGGCACCACAGTTTTGAAGGTCAAGCATTATAACGATTTGGAGAAAGGAGTGGGGGACCTGAATTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATGAATTTGCCCCACTGCTCACTGCTCATTTCATTGCCCACCAAACTTGCTTTGGCTTTTGCAACCTTTCCTTCCCCTGCTTCTTCCTTGCTGCCTTTCTCCATAT
ATTTTCAAGCTTAATACAATTACATTCTCTGTTCAAGGCTCAGATTCAGAAAGCTTTTTGCATGGGAAAAGGAGATTCCCCTGCATCAAGCTGCAAAATGCCACCAGTTC
CTCTTGCGCCATATCCAACTCCTCCGCCGCCTTATACTCCACCTGCTAATACCGCACAGAGCCAGCTTGTGTGTTCCGGATGTAGAAACCTTTTGCTTTATCCTGTTGGG
GCAACCTCTGTTTGCTGTGCAGTTTGTAATGCAGTTACCGCCGTTCCGCCGCCCGGTATTTCAGTTCTTCCTCCTCTTCTTTACTGTCTCCGTTGGTTTCTACTGCACAG
AAATGGCACAACTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATTCGCGGTGCTACCAGCGTGCAATGTTCTTGTTGTCACACCGTCAACTTAGCTTTGGAAGCG
AATCAGGTGGCGCATGTGAGCTGTGGGAACTGCCGGATGCTACTGATGTATCAGTATGGAGCACGTTCAGTGAAATGTTCAGTGTGCAACTTTGTGACATCAGTTGGGAT
GTCGACAAGCGCAGTCGATCAAAAAGCCTAACAGCTAAAGTTATGGTAAACATGGTTGTCCCCGACTCGACAACTGTGGCTTTGCATCATTCGTATCGCCCTCCGCCATG
TTTGATCAACTCGACAAGCGGAGAACAGAACGGTACATGGGTCGCCATTGGCATACAAAAGATCATAATCATGCATGTGAAGGGGACTAAAGTGGAGACAAAACAAGGCA
AGCTTGCAATAGGCACCACAGTTTTGAAGGTCAAGCATTATAACGATTTGGAGAAAGGAGTGGGGGACCTGAATTATTGA
Protein sequenceShow/hide protein sequence
MYEFAPLLTAHFIAHQTCFGFCNLSFPCFFLAAFLHIFSSLIQLHSLFKAQIQKAFCMGKGDSPASSCKMPPVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVG
ATSVCCAVCNAVTAVPPPGISVLPPLLYCLRWFLLHRNGTTGVWRLPYSSHVHSRCYQRAMFLLSHRQLSFGSESGGACELWELPDATDVSVWSTFSEMFSVQLCDISWD
VDKRSRSKSLTAKVMVNMVVPDSTTVALHHSYRPPPCLINSTSGEQNGTWVAIGIQKIIIMHVKGTKVETKQGKLAIGTTVLKVKHYNDLEKGVGDLNY