CuGenDBv2

Gene ID	CmaCh04G004610
Organism	Cucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Description	zinc finger SWIM domain-containing protein 7
Genome location	Cma_Chr04:2349088..2352413
RNA-Seq Expression	CmaCh04G004610
Synteny	CmaCh04G004610
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0097196 - Shu complex (cellular component) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR007527 - Zinc finger, SWIM-type

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6600296.1 Zinc finger SWIM domain-containing protein 7, partial [Cucurbita argyrosperma subsp. sororia]

2.5e-65

96.97

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Query:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSASTL AEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISG+PSGRSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACVEVKVSDEELAILLSNL
        KHQLAARLAASLGAC+EVKVSDEELAILLSNL
Subjt:  KHQLAARLAASLGACVEVKVSDEELAILLSNL

KAG7030956.1 Zinc finger SWIM domain-containing protein 7 [Cucurbita argyrosperma subsp. argyrosperma]

1.5e-65

96.97

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Query:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSASTL AEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRS+FQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACVEVKVSDEELAILLSNL
        KHQLAARLAASLGAC+EVKVSDEELAILLSNL
Subjt:  KHQLAARLAASLGACVEVKVSDEELAILLSNL

XP_022942858.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita moschata]

1.1e-65

97.73

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Query:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSASTL AEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACVEVKVSDEELAILLSNL
        KHQLAARLAASLGAC+EVKVSDEELAILLSNL
Subjt:  KHQLAARLAASLGACVEVKVSDEELAILLSNL

XP_022983272.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita maxima]

5.9e-67

100

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Query:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACVEVKVSDEELAILLSNL
        KHQLAARLAASLGACVEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASLGACVEVKVSDEELAILLSNL

XP_023526305.1 zinc finger SWIM domain-containing protein 7 isoform X2 [Cucurbita pepo subsp. pepo]

5.5e-65

96.21

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Query:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSASTL AEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVK+ISG+PSGRSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACVEVKVSDEELAILLSNL
        KHQLAARLAASLGAC+EVKVSDEELAILLSNL
Subjt:  KHQLAARLAASLGACVEVKVSDEELAILLSNL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWG5 SWIM-type domain-containing protein

2.8e-62

93.18

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Query:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSAS +VAEAVWKQIESTR VTDDQLSILHFLFGKNFERATRIVDQ GVKKISG PS RSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACVEVKVSDEELAILLSNL
        KHQLAARLAAS+GAC+EVKVSDEELAILLSNL
Subjt:  KHQLAARLAASLGACVEVKVSDEELAILLSNL

A0A1S3BZP2 zinc finger SWIM domain-containing protein 7

1.6e-62

93.18

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Query:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSAS +VAEAVWK+IESTR VTDDQLSILHFLFGKNFERATRIVDQ GVKKISG PS RSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACVEVKVSDEELAILLSNL
        KHQLAARLAAS+GAC+EVKVSDEELAILLSNL
Subjt:  KHQLAARLAASLGACVEVKVSDEELAILLSNL

A0A6J1D5Z4 zinc finger SWIM domain-containing protein 7

6.2e-62

91.67

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Query:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSAS +VAEAVWKQI+STRSVTDDQLS+LHFLFGKNFERATRIVDQ GVKKI GEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYD VNRGEQLCC
Subjt:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACVEVKVSDEELAILLSNL
        KHQLAARLAASLGA +E KVSDEELA+LLSNL
Subjt:  KHQLAARLAASLGACVEVKVSDEELAILLSNL

A0A6J1FSJ7 zinc finger SWIM domain-containing protein 7 isoform X2

5.4e-66

97.73

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Query:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSASTL AEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEY CFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACVEVKVSDEELAILLSNL
        KHQLAARLAASLGAC+EVKVSDEELAILLSNL
Subjt:  KHQLAARLAASLGACVEVKVSDEELAILLSNL

A0A6J1J6W2 zinc finger SWIM domain-containing protein 7 isoform X2

2.9e-67

100

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Query:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
Subjt:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACVEVKVSDEELAILLSNL
        KHQLAARLAASLGACVEVKVSDEELAILLSNL
Subjt:  KHQLAARLAASLGACVEVKVSDEELAILLSNL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G33925.1 unknown protein

2.7e-49

68.18

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Query:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        M+ + LVA+AVW  IEST SVT++QLSIL  LFGKN E+ATRI+D+ GVKKISG PSGRSIFQVVGES+++EEY CFP ++C CYSFFYD+V+RGE  CC
Subjt:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACVEVKVSDEELAILLSNL
        KHQLAARLA+SLG   E++VSD+ LA++LS +
Subjt:  KHQLAARLAASLGACVEVKVSDEELAILLSNL

AT4G33925.2 unknown protein

4.0e-45

69.75

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Query:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC
        M+ + LVA+AVW  IEST SVT++QLSIL  LFGKN E+ATRI+D+ GVKKISG PSGRSIFQVVGES+++EEY CFP ++C CYSFFYD+V+RGE  CC
Subjt:  MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCC

Query:  KHQLAARLAASLGACVEVK
        KHQLAARLA+SLG   E++
Subjt:  KHQLAARLAASLGACVEVK

Sequences

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CDS sequence

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mRNA sequence

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ATGAGTGCGAGTACCCTTGTCGCCGAAGCAGTGTGGAAGCAGATCGAGTCGACTCGATCAGTGACTGACGATCAGCTTTCAATATTGCATTTCTTGTTTGGGAAG
AACTTCGAGCGAGCTACTCGGATTGTGGATCAAAGTGGAGTGAAGAAAATTTCAGGCGAGCCAAGCGGACGGTCCATCTTTCAGGTTGTGGGAGAATCTCGAAGG
AAAGAGGAGTATTTCTGTTTCCCAGAAAACTTTTGTGCCTGTTATTCCTTCTTCTATGACATTGTGAACAGAGGAGAACAGCTTTGCTGCAAGCATCAGTTAGCT
GCAAGGCTTGCTGCTTCACTGGGGGCTTGTGTTGAAGTTAAAGTATCTGATGAAGAGCTAGCGATATTATTGTCCAATCTTTAGTGACTTTATCAAAGCCAAAGC
TCTCAGTACTCAAAGTTTGAGAGAACACTGGCAGTGCTATTTGGACGACAGTTTTTCTCTTGCAAACAGATTTTGTACAAGGAAAGTTTTGGCCATTACCATATG
TCAAGTCTGCCGTTACTATTAACATCCAGTTCAAATACATTATTTATCTGTATAGTTTAAGAGTCGGGATTTGTGATTGGGTTCCTTGTATGATATATTTGTTTC
GGGGCATTGGATATTTGAACCAAAAGTACTTGTCTGAAATAGTTGAGCTATACTCAGGTTGACAAAAATTACAAGAGTTCGAAAGACG

Protein sequence

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MSASTLVAEAVWKQIESTRSVTDDQLSILHFLFGKNFERATRIVDQSGVKKISGEPSGRSIFQVVGESRRKEEYFCFPENFCACYSFFYDIVNRGEQLCCKHQLA
ARLAASLGACVEVKVSDEELAILLSNL

CmaCh04G004610 (gene) of Cucurbita maxima (Rimu) v1.1 genome