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CmaCh04G007060 (gene) of Cucurbita maxima (Rimu) v1.1 genome

Gene IDCmaCh04G007060
OrganismCucurbita maxima Rimu (Cucurbita maxima (Rimu) v1.1)
Descriptionarabinogalactan peptide 22-like
Genome locationCma_Chr04:3584869..3586478
RNA-Seq ExpressionCmaCh04G007060
SyntenyCmaCh04G007060
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600532.1 Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia]2.0e-27100Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSS
        MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSS
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSS

KAG7031172.1 Arabinogalactan peptide 20 [Cucurbita argyrosperma subsp. argyrosperma]2.0e-27100Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSS
        MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSS
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSS

XP_022941572.1 arabinogalactan peptide 22-like [Cucurbita moschata]5.7e-2798.63Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSS
        MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADL SSSSS
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSS

XP_022985432.1 arabinogalactan peptide 20 [Cucurbita maxima]3.8e-2390Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASS
        MAVSR SFGFVAAAAL+F IFLPVAQPQSLAPAPAPTSDGTSIDQGIAY+LM VALALTYLIH+ADL+SS
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASS

XP_023522233.1 arabinogalactan peptide 22-like [Cucurbita pepo subsp. pepo]2.0e-27100Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSS
        MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSS
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSS

TrEMBL top hitse value%identityAlignment
A0A0A0KZS8 Uncharacterized protein3.3e-2083.58Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADL
        MAVSR+SFG +AA AL+F IFLPVA P SLAPAPAPTSDGTSIDQGIAY+LM VALALTYLIH+ADL
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADL

A0A6J1C4C2 arabinogalactan peptide 22-like2.3e-2184.29Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASS
        MAVSRASFGFVAAAAL+F IFLPVA P SL PAPAP+SDGTSIDQGIAY+LM VALALTYLIH+ADL++S
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASS

A0A6J1ETC6 arabinogalactan peptide 22-like4.1e-2388.57Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASS
        MAVSR SFGFVAAAAL+F IFLPVAQPQSLAPAPAPTSDGTSIDQGIAY+LM VALALTYLIH+ADL++S
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASS

A0A6J1FMT5 arabinogalactan peptide 22-like2.8e-2798.63Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSS
        MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADL SSSSS
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSS

A0A6J1J4V7 arabinogalactan peptide 201.9e-2390Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASS
        MAVSR SFGFVAAAAL+F IFLPVAQPQSLAPAPAPTSDGTSIDQGIAY+LM VALALTYLIH+ADL+SS
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASS

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 165.7e-1464.79Show/hide
Query:  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSF
        SR S    A  + VF + L +A  QSLAPAPAPTSDGTSIDQGIAY+LM VAL LTYLIH  D +SS S F
Subjt:  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSF

Q8L9T8 Arabinogalactan protein 415.7e-1465.08Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH
        M+ SR  FG     +++F I LP+A  QS APAPAPTSDGT+IDQGIAY+LM VAL LTYLIH
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH

Q9FK16 Arabinogalactan protein 229.2e-1260.32Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH
        MA  +     +A   ++  I LP+AQ  S +PAPAPTSDGTSIDQGIAY+LM VALALTY IH
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH

Q9M373 Arabinogalactan protein 203.0e-1564.79Show/hide
Query:  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSF
        SR S   +A  A VF +  P A  QSLAPAP+PTSDGTSIDQGIAY+LM VAL LTYLIH  D +SSS +F
Subjt:  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSF

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 164.1e-1564.79Show/hide
Query:  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSF
        SR S    A  + VF + L +A  QSLAPAPAPTSDGTSIDQGIAY+LM VAL LTYLIH  D +SS S F
Subjt:  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSF

AT3G61640.1 arabinogalactan protein 202.2e-1664.79Show/hide
Query:  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSF
        SR S   +A  A VF +  P A  QSLAPAP+PTSDGTSIDQGIAY+LM VAL LTYLIH  D +SSS +F
Subjt:  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSF

AT5G24105.1 arabinogalactan protein 414.1e-1565.08Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH
        M+ SR  FG     +++F I LP+A  QS APAPAPTSDGT+IDQGIAY+LM VAL LTYLIH
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH

AT5G53250.1 arabinogalactan protein 226.5e-1360.32Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH
        MA  +     +A   ++  I LP+AQ  S +PAPAPTSDGTSIDQGIAY+LM VALALTY IH
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCT
CCCACCAGCGACGGTACATCCATAGATCAAGGGATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGACTTAGCCAGCAGC
AGCAGCAGCTTCTAG
mRNA sequenceShow/hide mRNA sequence
GAAAGTTTGGATCCCCTCGTTTGCCCATCGCGAGACTGCCTTTGTTTCCGTTTAGATATTTCGTCTTCTTCTTCATTTCGCCCTTCGAGAAGAGAGGGAGATTCC
TTTCCTTCTCTCTCTCTCTGCGAGCCTCTTTGAAGCTATTGGAGAAGAAGCCTTTTGAAGCTTCTTTACCTGAGAGTCGCATTGCAGAGAGAGATCTAGCCTCGT
GTACTACATTTCTTGCGATTCTTCGCCTGCAGAAAGGAGAGGGGAAATTACCGCACGATTCGGACTCATATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCT
GCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCACCAGCGACGGTACATCCATAGATCAAGGGATA
GCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGACTTAGCCAGCAGCAGCAGCAGCTTCTAGGATCATAACAGTATTTGGGAG
TTTAGTTAGAAATGGCAATGGGTTCTTCTCGTGCTGCATCCTTTCCCGTTTCTGTTTTGGTTTTTTTTTTATTTATTTATTAGATCATCATCCTCACACATTTCT
TCTATGTACATTCTCCTCATTTTTAAATCACATTTATTGGCTTTCCCTTTTTCCCTTTTCTCTCTTCAATTTTACCCGAATAACACCAAAAATATTAGTAG
Protein sequenceShow/hide protein sequence
MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSF